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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100277g6.2163.mrna |
| Orig protein id | gnl|cribi|Naga_100277g6.2163 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037248.1 | supercontig | KK037248.1:491986..494574 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8365 ID=rna8365|Name=rna8365|organism=Nannochloropsis gaditana|type=mRNA|length=2343bp
ATGCCGCTGCCCTCTCAACAGCAACTTTACCTTGATTTTTTGATTCCAAC
GTCCACGACCGACATAGGTACCATGAGACGACATGGCACGGACATTAAAA
TGTTTTGGGCACCTGTCTTGGTAATCTCATTGATGGTGGCACCGGCCAGC
ACGTGGGGCTTCTACCTCCTCCCAGTCTCCTCCTTGCTCAACGGGCGGTT
GACTTCCAGACCGCCGTCCACCGCCCTGGCATCCCAGCAGCCACCTCCAT
CGGGCCGAGATAGCGGAGAGTACATACCACAGTCCTACGGGTTGAAAGAG
GAGGCGGAAGATCCCTACCTCGTGTCCCTCAAGCGTGGCGAGCCTCCTCG
TCGGGAGGCTGGCGTTGGTTCCACGAGTGCATCGCCCGTGGGACCTTCGC
ACGCTAGCCAGACACGGACGCCTGAGGAGATCAAGGCCTTGAATGAGGCG
GCCAAGGCACGCATGGAAGCCTACGCGCGGGGCGAGAAACCGCCCGGATT
TGGAGCATCCCCGCCTGTCCCTTCTGGTTTCACCCCCTCCACCCCCAATA
CCCCGGAGGGTTTTAACCCCAACAAATTCATGGATTTCTACCGGGAGCAC
GAGGCCAAGCTGGCGGCTGAAAACGCCGCAAAGGCCGCCGAGACCCCGGC
GCAAGCTGCAGTCCCTCGACCTCAAGGAGCCCCTATCATGCCGGGCGTGC
CCGAGCCTTACCAACCTCCGCCCCAATACCAACAGCAACCGTCCCCCGCC
CAACTCCAGGCACAAGAAGAGCAAGCAAAGGGCTCTCCCCAAAGCTACGA
GTCTCACGGAGGTTCCCGGTTCAAGGGGGTTTTTGACGCGGCCGCCGCCG
CCGGATCCACGAATCCGGCCAAGGAGAGGTTGAAGCAGTACCTGCTCTCC
CGCTACGCCCCCGACGATATGTCCGAGCAGGCCGTAAATTACCGACGGCT
CATCCAATTCGCGGACACGGGCGGCGGGTACTCGGGCTCGTCGACGGAGG
ACTCGGACGAGGCCTACCTGGCCCAGCTCAAAGCGGACGCTCGGGAGAAG
ATCCGCAACAACCCCTGGCAGACGGTGCGGAGGGAGGAGCTGGCCCCCTC
CGAGAAAGGCGTGCCCCTGCCCCCCCTGGCCCCAACACCCGAACCCACCG
GGACCCAGGCAGCAGCCCGTCAGGACGCTGGCCTGGGACGCCCCCCCCCG
CCTCCATCCATGTCAGAGAGCTCCCCTCCCCCCCCCCCTCCGGGATGGAT
TCCTCCTCCCCTGCCCCCGCCCTCGACGACTCCTCCTTCTGCCTACGCCT
CCCCTCATTCTTACACGCCTTCCCCCGCACAAATTCCCTCCCCTCCTCCC
CCGTTCCCTCCCTCCCGCGGCCCCTCCCCCCCCGCGCTCGCCCAAATGGG
CATAGAGAGCTCTATGACCCAGCTGGGAGCCTACTTGACCGCCCACAAGG
CCACGGGGGAACGCTTACAAGGCCAAGATTTGGACCGGCTCGAGTCCCTC
CTGACTTCCGTGGGCGCCATGCTGGAACGGGAGGGCCGGCGCTTGGGCTC
CCGCCCAGCCTACTCGGAGGAAGAGGGTCCAGGCGTTCCAGTGCAGGGGT
TCCTGGTGGAGAGGGAGGAAAGGGAGGTGTTGCTGGCGACAGCGGCAAGT
CTGCAGGCCCTAGCGGGGCTGGGTGCGGACGAAGAGGGTGCCTTGGCCGC
TGGACGGGAGGTGCCCCGCTTGCAGGTTCTCTTGAGACGTGCTCTGGCCG
TAGTGGACGGGCCTTCGGGAGGAAAAGCCCCGGAGTACTCACAGAAATCT
GGCGCGTCGCCTCTGTCCGAAGCCTTCTCGGGCCCGGCGGCTGTGCAGGG
ACCTGGGGCCATGCCATGGCCGCAGTCAGTACGTGACGTTCCCTTCCCGG
TCCCCGCCTCCCCGTCCCTCACCCCACCACCTTCACCTCCTTCTCCCCCT
TCCTCCGCCCCGCCTCCCTCCTTAGACACGGTGGAGCTGAGCAGTGAGGA
TCGGGCGAAATTGCAAGGGACGATGGCCTTGGTGTTGAAGCACTCGGGGG
CCTTTGGGAAAATGAGCGGGCCGTTACGGGGGGAGGAACTCGGCTTGTTA
AAGAGTGTACTGAATGACACCATGGCTGTTTTGAGAAAGGAAACCGAAAC
AGCTTACGATTGCAGTGTGGAAAAATATTTGGAAGACCATCCGCACGCAA
TGGAGGAGCTGGCGGAGGCCCAAGCGGCAGCAGCAAGCACCGGGTCACAA
TTCACCGTGATGAACGTCCCCGCGCCGGCCGCGGGGAAGCCAAAATCATA
CAAGGAATTGCTGAGCGAGGCCAGGCAAAAGAAAAAGTCATAA back to topprotein sequence of rna8365 >rna8365-protein ID=rna8365-protein|Name=rna8365|organism=Nannochloropsis gaditana|type=polypeptide|length=487bp
MYHGHDPPLQHDFYHYGGGEEGDNDGIILSTAQLDCRLLPGELIIAHIAR
QHVLQASWIILKVALFSEEEEEEEAEEEEEEEEGGETRGGLERAGGNELN
EYRIRTRQQQAPMRALILDGDGATLVMSQAQYKRVVASGLAHLLHLAPSP
WRALEFCLGHTVAEVPGVVNHLAKLMADENISILHHSTYSAEIFLVQAPE
LASAVRCIRERVDAALHGVLAAHAERIGSVRAGTDSEGGSPSYLGSPVKR
EGGEEDGGDVDRKMHEIGVSRDGEGEGRKGREGGTAGKPASLLSSWVQKL
RVGPSRVLPPSSSPPSRLATPATSGMSRAASSAPPSFGPSSPAPGPSLAG
LLPADIPHNRGGKEGGSDNDRGAGGRLAASEPPRPFPSHQQPSWAPGRPL
AKPSSPPSLSTSPFSTFVGPTSPPLTLRVMPQSLVLARLNQEALPERSDL
LARLLLFDRLAIRRFGAGGGGGGGEGGIEGKGGKHQR back to topmRNA from alignment at KK037248.1:491986..494574+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8365 ID=rna8365|Name=rna8365|organism=Nannochloropsis gaditana|type=mRNA|length=2589bp|location=Sequence derived from alignment at KK037248.1:491986..494574+ (Nannochloropsis gaditana)
CGAGTCGATCGGTTGCTCGTCCTTGGAAAAATGCACTTGCAGGAAACGCC
GTGGCTTCCTACGCGTTGCCCGCGCTTTGCCAGACGGAGTACGATGCTGC
CGCCTCAACTCTGACACTTCAACCTTGTCCACCTGCGTGCACAGGGCCTT
GTCTGTCCAGAATTGAGGGTTCTGGAACAGAACAGAGCCTTGGAGGGGGG
TGCGTGGCTGTCCTCGCGCTCTCTCGCTTCGAGCGGCCCACACCATGTAC
CACGGCCACGATCCACCTCTGCAGCATGACTTCTACCAttatggaggagg
agaggaaggggacaacGATGGGATCATCTTGAGCACGGCGCAGCTCGACT
GTCGGTTGCTGCCCGGGGAGCTCATAATCGCACACATCGCACGTGAGTTG
CACTTGCCCGGTGGGGAAATGGCTGCAAATGTGGGCAGGTCGGAAAAGTT
TATCACGTTATCGGCCTTTACTGTTACACGACAGGTCAACATGTCCTTCA
GGCCTCATGGATTATTCTGAAGGTGGCTCTGTTttcggaagaggaggagg
aggaggaggcggaggaggaggaggaggaggaagagggaggggagacacGC
GGAGGAttggaaagggcgggagggaatgagTTGAATGAATACAGGATCCG
CACACGCCAACAGCAGGTATTTACTGGGCAACaatgcgggggggggggtt
gtgATTCCACCTCgaaccctccttttcctctttttgaaACCTCTCCCATG
TCTGTACCATGTCCCGTGCGTTTTGCTCCTACGTCCTCGCCTGCTCGAAG
TGCCTGCTCCAGCGTGGTTGTCACACAGCACGATTCAAAgacctcccgtc
ctctcaTATAccatgcccccgccccctttcttcctccccccttccctccc
tccctccctccccccccccgccctcctccaggcccccaTGCGCGCCTTAA
TCCTGGACGGAGACGGGGCCACCTTGGTGATGAGCCAAGCGCAGTACAAA
CGTGTGGTTGCCTccggcctcgcccacctcctccacctggccCCCAGCCC
GTGGCGGGCCTTGGAGTTCTGCCTTGGGCACACGGTCGCGGAGGTGCCCG
GGGTAGTCAACCACCTGGCCAAACTCATGGCGGACGAGAAtatctccatc
ctccaccacaGCACCTACAGCGCGGAGATCTTTTTGGTCCAGGCCCCTGA
GCTCGCCTCGGCGGTCCGGTGCATTCGCGAACGTGTGGACGCGGCGTTGC
ACGGGGTCCTGGCGGCCCATGCCGagcggatcggatcggtcCGGGCAGGC
ACCGACTCGGAGGGCGGTAGTCCATCGTACCTAGGGTCGCCTgtgaagcg
ggagggaggggaggaggatgggggggacgTGGACCGGAAGATGCATGAGA
TTGGGGTGAGCCGTGacggcgagggggagggaaggaagggaagggaggga
gggacggcggggaAACCGGCCtcgttgctttcctcctgggTGCAGAAGCT
CCGTGTGGGGCCATCCcgggtcctccctccctcttcgtctcctccctcgc
gcctgGCGACGCCTGCCACCTCGGGAATGTCCCGGGCTgcgtcctctgcc
cctccctccttcggcccctcgtctcccgcCCCGGGCCCTTCACTCGCcgg
tctccttcccgccgacATTCCGCACAaccggggaggaaaggaaggaggaa
gtgataATGAtagaggggcgggaggacgactGGCAGCCTCCgaacctccc
cgtcccttcccGTCTCATCAGCAGCCATCCTGGGCGCCCGGGCGCCCTCT
GGccaagccgtcctccccgccctccctttccacctcccccttctccacct
ttgtgggccccacctcccctcccctcacccttcGTGTGATGCCTCAGTCC
CTCGTCTTGGCGCGCCTGAACCAGGAGGCCTTGCCAGAgcgttccgatct
tctcgcccgccttctcctcttcgaccGCCTGGCCATCCGCCGCtttgggg
cggggggaggggggggagggggggagggagggatagagggcaagggaggg
aaacaccAGCGGTGATGCCCGACGCGCatccgacgcctccctccttctcc
tcctcctcctctggcgTCAAGGCAGGAGCCTCagcctccatccccatccc
tccccttccctcctcctccctcaacccGAACCACCGCACTCCCCCGGGGG
CCCGCTCCGGTTGGCCCCACACCCatcgccgtccctccccctccctaggt
cccgtcctcccccccgacctggAGTTCGGGCCCCTGGCCTtggtggaaat
ggaaggggaagtcaccctcctcctggaggaggagaccctaccgctcttcc
cgcctttgGCCCTGCTTCCTTGTCCATTAAGGTGGCGGGCGCTGAAACTC
TGCGGGCGGCCCTTTGGATTCGAAGAAACGGGCTTGGTCGCTGCCATGTG
CAAGATGGACGACGCCACCCCGCTCCTCAATTTTTCCACGTTTCTGACGA
ATTTTACccttgtggaggaggaaggggtggaggagaccgtGGGCAGGTTG
CGGCAGGAGGTTGGggcggggttggagggatgagtaagg back to topCoding sequence (CDS) from alignment at KK037248.1:491986..494574+ >rna8365 ID=rna8365|Name=rna8365|organism=Nannochloropsis gaditana|type=CDS|length=4392bp|location=Sequence derived from alignment at KK037248.1:491986..494574+ (Nannochloropsis gaditana)
ATGTACCACGGCCACGATCCACCTCTGCAGCATGACTTCTACCAttatgg
aggaggagaggaaggggacaacGATGGGATCATCTTGAGCACGGCGCAGC
TCGACTGTCGGTTGCTGCCCGGGGAGCTCATAATCGCACACATCGCACGT
CAACATGTCCTTCAGGCCTCATGGATTATTCTGAAGGTGGCTCTGTTttc
ggaagaggaggaggaggaggaggcggaggaggaggaggaggaggaagagg
gaggggagacacGCGGAGGAttggaaagggcgggagggaatgagTTGAAT
GAATACAGGATCCGCACACGCCAACAGCAGgcccccaTGCGCGCCTTAAT
CCTGGACGGAGACGGGGCCACCTTGGTGATGAGCCAAGCGCAGTACAAAC
GTGTGGTTGCCTccggcctcgcccacctcctccacctggccCCCAGCCCG
TGGCGGGCCTTGGAGTTCTGCCTTGGGCACACGGTCGCGGAGGTGCCCGG
GGTAGTCAACCACCTGGCCAAACTCATGGCGGACGAGAAtatctccatcc
tccaccacaGCACCTACAGCGCGGAGATCTTTTTGGTCCAGGCCCCTGAG
CTCGCCTCGGCGGTCCGGTGCATTCGCGAACGTGTGGACGCGGCGTTGCA
CGGGGTCCTGGCGGCCCATGCCGagcggatcggatcggtcCGGGCAGGCA
CCGACTCGGAGGGCGGTAGTCCATCGTACCTAGGGTCGCCTgtgaagcgg
gagggaggggaggaggatgggggggacgTGGACCGGAAGATGCATGAGAT
TGGGGTGAGCCGTGacggcgagggggagggaaggaagggaagggagggag
ggacggcggggaAACCGGCCtcgttgctttcctcctgggTGCAGAAGCTC
CGTGTGGGGCCATCCcgggtcctccctccctcttcgtctcctccctcgcg
cctgGCGACGCCTGCCACCTCGGGAATGTCCCGGGCTgcgtcctctgccc
ctccctccttcggcccctcgtctcccgcCCCGGGCCCTTCACTCGCcggt
ctccttcccgccgacATTCCGCACAaccggggaggaaaggaaggaggaag
tgataATGAtagaggggcgggaggacgactGGCAGCCTCCgaacctcccc
gtcccttcccGTCTCATCAGCAGCCATCCTGGGCGCCCGGGCGCCCTCTG
Gccaagccgtcctccccgccctccctttccacctcccccttctccacctt
tgtgggccccacctcccctcccctcacccttcGTGTGATGCCTCAGTCCC
TCGTCTTGGCGCGCCTGAACCAGGAGGCCTTGCCAGAgcgttccgatctt
ctcgcccgccttctcctcttcgaccGCCTGGCCATCCGCCGCtttggggc
ggggggaggggggggagggggggagggagggatagagggcaagggaggga
aacaccAGCGGTGAATGTACCACGGCCACGATCCACCTCTGCAGCATGAC
TTCTACCAttatggaggaggagaggaaggggacaacGATGGGATCATCTT
GAGCACGGCGCAGCTCGACTGTCGGTTGCTGCCCGGGGAGCTCATAATCG
CACACATCGCACGTCAACATGTCCTTCAGGCCTCATGGATTATTCTGAAG
GTGGCTCTGTTttcggaagaggaggaggaggaggaggcggaggaggagga
ggaggaggaagagggaggggagacacGCGGAGGAttggaaagggcgggag
ggaatgagTTGAATGAATACAGGATCCGCACACGCCAACAGCAGgccccc
aTGCGCGCCTTAATCCTGGACGGAGACGGGGCCACCTTGGTGATGAGCCA
AGCGCAGTACAAACGTGTGGTTGCCTccggcctcgcccacctcctccacc
tggccCCCAGCCCGTGGCGGGCCTTGGAGTTCTGCCTTGGGCACACGGTC
GCGGAGGTGCCCGGGGTAGTCAACCACCTGGCCAAACTCATGGCGGACGA
GAAtatctccatcctccaccacaGCACCTACAGCGCGGAGATCTTTTTGG
TCCAGGCCCCTGAGCTCGCCTCGGCGGTCCGGTGCATTCGCGAACGTGTG
GACGCGGCGTTGCACGGGGTCCTGGCGGCCCATGCCGagcggatcggatc
ggtcCGGGCAGGCACCGACTCGGAGGGCGGTAGTCCATCGTACCTAGGGT
CGCCTgtgaagcgggagggaggggaggaggatgggggggacgTGGACCGG
AAGATGCATGAGATTGGGGTGAGCCGTGacggcgagggggagggaaggaa
gggaagggagggagggacggcggggaAACCGGCCtcgttgctttcctcct
gggTGCAGAAGCTCCGTGTGGGGCCATCCcgggtcctccctccctcttcg
tctcctccctcgcgcctgGCGACGCCTGCCACCTCGGGAATGTCCCGGGC
TgcgtcctctgcccctccctccttcggcccctcgtctcccgcCCCGGGCC
CTTCACTCGCcggtctccttcccgccgacATTCCGCACAaccggggagga
aaggaaggaggaagtgataATGAtagaggggcgggaggacgactGGCAGC
CTCCgaacctccccgtcccttcccGTCTCATCAGCAGCCATCCTGGGCGC
CCGGGCGCCCTCTGGccaagccgtcctccccgccctccctttccacctcc
cccttctccacctttgtgggccccacctcccctcccctcacccttcGTGT
GATGCCTCAGTCCCTCGTCTTGGCGCGCCTGAACCAGGAGGCCTTGCCAG
AgcgttccgatcttctcgcccgccttctcctcttcgaccGCCTGGCCATC
CGCCGCtttggggcggggggaggggggggagggggggagggagggataga
gggcaagggagggaaacaccAGCGGTGAATGTACCACGGCCACGATCCAC
CTCTGCAGCATGACTTCTACCAttatggaggaggagaggaaggggacaac
GATGGGATCATCTTGAGCACGGCGCAGCTCGACTGTCGGTTGCTGCCCGG
GGAGCTCATAATCGCACACATCGCACGTCAACATGTCCTTCAGGCCTCAT
GGATTATTCTGAAGGTGGCTCTGTTttcggaagaggaggaggaggaggag
gcggaggaggaggaggaggaggaagagggaggggagacacGCGGAGGAtt
ggaaagggcgggagggaatgagTTGAATGAATACAGGATCCGCACACGCC
AACAGCAGgcccccaTGCGCGCCTTAATCCTGGACGGAGACGGGGCCACC
TTGGTGATGAGCCAAGCGCAGTACAAACGTGTGGTTGCCTccggcctcgc
ccacctcctccacctggccCCCAGCCCGTGGCGGGCCTTGGAGTTCTGCC
TTGGGCACACGGTCGCGGAGGTGCCCGGGGTAGTCAACCACCTGGCCAAA
CTCATGGCGGACGAGAAtatctccatcctccaccacaGCACCTACAGCGC
GGAGATCTTTTTGGTCCAGGCCCCTGAGCTCGCCTCGGCGGTCCGGTGCA
TTCGCGAACGTGTGGACGCGGCGTTGCACGGGGTCCTGGCGGCCCATGCC
GagcggatcggatcggtcCGGGCAGGCACCGACTCGGAGGGCGGTAGTCC
ATCGTACCTAGGGTCGCCTgtgaagcgggagggaggggaggaggatgggg
gggacgTGGACCGGAAGATGCATGAGATTGGGGTGAGCCGTGacggcgag
ggggagggaaggaagggaagggagggagggacggcggggaAACCGGCCtc
gttgctttcctcctgggTGCAGAAGCTCCGTGTGGGGCCATCCcgggtcc
tccctccctcttcgtctcctccctcgcgcctgGCGACGCCTGCCACCTCG
GGAATGTCCCGGGCTgcgtcctctgcccctccctccttcggcccctcgtc
tcccgcCCCGGGCCCTTCACTCGCcggtctccttcccgccgacATTCCGC
ACAaccggggaggaaaggaaggaggaagtgataATGAtagaggggcggga
ggacgactGGCAGCCTCCgaacctccccgtcccttcccGTCTCATCAGCA
GCCATCCTGGGCGCCCGGGCGCCCTCTGGccaagccgtcctccccgccct
ccctttccacctcccccttctccacctttgtgggccccacctcccctccc
ctcacccttcGTGTGATGCCTCAGTCCCTCGTCTTGGCGCGCCTGAACCA
GGAGGCCTTGCCAGAgcgttccgatcttctcgcccgccttctcctcttcg
accGCCTGGCCATCCGCCGCtttggggcggggggaggggggggagggggg
gagggagggatagagggcaagggagggaaacaccAGCGGTGA back to top
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