EWM22339.1, cds8338 (CDS) Nannochloropsis gaditana

Overview
NameEWM22339.1
Unique Namecds8338
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:492230..492377 +
Alignment locationKK037248.1:492470..492651 +
Alignment locationKK037248.1:492917..494050 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22339.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100277g6.2163.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:492230..492377 +
KK037248.1supercontigKK037248.1:492470..492651 +
KK037248.1supercontigKK037248.1:492917..494050 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR027795GATS-like_ACT_dom
Homology
BLAST of EWM22339.1 vs. NCBI_GenBank
Match: gi|585102837|gb|EWM22339.1| (hypothetical protein Naga_100277g6 [Nannochloropsis gaditana])

HSP 1 Score: 966.452 bits (2497), Expect = 0.000e+0
Identity = 487/487 (100.00%), Postives = 487/487 (100.00%), Query Frame = 0
Query:    1 MYHGHDPPLQHDFYHYGGGEEGDNDGIILSTAQLDCRLLPGELIIAHIARQHVLQASWIILKVALFSEEEEEEEAEEEEEEEEGGETRGGLERAGGNELNEYRIRTRQQQAPMRALILDGDGATLVMSQAQYKRVVASGLAHLLHLAPSPWRALEFCLGHTVAEVPGVVNHLAKLMADENISILHHSTYSAEIFLVQAPELASAVRCIRERVDAALHGVLAAHAERIGSVRAGTDSEGGSPSYLGSPVKREGGEEDGGDVDRKMHEIGVSRDGEGEGRKGREGGTAGKPASLLSSWVQKLRVGPSRVLPPSSSPPSRLATPATSGMSRAASSAPPSFGPSSPAPGPSLAGLLPADIPHNRGGKEGGSDNDRGAGGRLAASEPPRPFPSHQQPSWAPGRPLAKPSSPPSLSTSPFSTFVGPTSPPLTLRVMPQSLVLARLNQEALPERSDLLARLLLFDRLAIRRFGAGGGGGGGEGGIEGKGGKHQR 487
            MYHGHDPPLQHDFYHYGGGEEGDNDGIILSTAQLDCRLLPGELIIAHIARQHVLQASWIILKVALFSEEEEEEEAEEEEEEEEGGETRGGLERAGGNELNEYRIRTRQQQAPMRALILDGDGATLVMSQAQYKRVVASGLAHLLHLAPSPWRALEFCLGHTVAEVPGVVNHLAKLMADENISILHHSTYSAEIFLVQAPELASAVRCIRERVDAALHGVLAAHAERIGSVRAGTDSEGGSPSYLGSPVKREGGEEDGGDVDRKMHEIGVSRDGEGEGRKGREGGTAGKPASLLSSWVQKLRVGPSRVLPPSSSPPSRLATPATSGMSRAASSAPPSFGPSSPAPGPSLAGLLPADIPHNRGGKEGGSDNDRGAGGRLAASEPPRPFPSHQQPSWAPGRPLAKPSSPPSLSTSPFSTFVGPTSPPLTLRVMPQSLVLARLNQEALPERSDLLARLLLFDRLAIRRFGAGGGGGGGEGGIEGKGGKHQR
Sbjct:    1 MYHGHDPPLQHDFYHYGGGEEGDNDGIILSTAQLDCRLLPGELIIAHIARQHVLQASWIILKVALFSEEEEEEEAEEEEEEEEGGETRGGLERAGGNELNEYRIRTRQQQAPMRALILDGDGATLVMSQAQYKRVVASGLAHLLHLAPSPWRALEFCLGHTVAEVPGVVNHLAKLMADENISILHHSTYSAEIFLVQAPELASAVRCIRERVDAALHGVLAAHAERIGSVRAGTDSEGGSPSYLGSPVKREGGEEDGGDVDRKMHEIGVSRDGEGEGRKGREGGTAGKPASLLSSWVQKLRVGPSRVLPPSSSPPSRLATPATSGMSRAASSAPPSFGPSSPAPGPSLAGLLPADIPHNRGGKEGGSDNDRGAGGRLAASEPPRPFPSHQQPSWAPGRPLAKPSSPPSLSTSPFSTFVGPTSPPLTLRVMPQSLVLARLNQEALPERSDLLARLLLFDRLAIRRFGAGGGGGGGEGGIEGKGGKHQR 487          
BLAST of EWM22339.1 vs. NCBI_GenBank
Match: gi|553189547|ref|XP_005855023.1| (hypothetical protein NGA_0402600, partial [Nannochloropsis gaditana CCMP526] >gi|422294035|gb|EKU21335.1| hypothetical protein NGA_0402600, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 219.164 bits (557), Expect = 9.627e-67
Identity = 110/117 (94.02%), Postives = 110/117 (94.02%), Query Frame = 0
Query:    1 MYHGHDPPLQHDFYHYGGGEEGDNDGIILSTAQLDCRLLPGELIIAHIARQHVLQASWIILKVALFSE-------EEEEEEAEEEEEEEEGGETRGGLERAGGNELNEYRIRTRQQQ 110
            MYHGHDPPLQHDFYHYGGGEEGDNDGIILSTAQLDCRLLPGELIIAHIARQHVLQASWIILKVALFSE       EEEEEEAEEEEEEEEGGETRGGLERAGGNELNEYRIRTRQQQ
Sbjct:    1 MYHGHDPPLQHDFYHYGGGEEGDNDGIILSTAQLDCRLLPGELIIAHIARQHVLQASWIILKVALFSEEEEEEEAEEEEEEAEEEEEEEEGGETRGGLERAGGNELNEYRIRTRQQQ 117          
BLAST of EWM22339.1 vs. NCBI_GenBank
Match: gi|1214705257|gb|OWZ16983.1| (hypothetical protein PHMEG_0009140 [Phytophthora megakarya])

HSP 1 Score: 104.375 bits (259), Expect = 5.524e-21
Identity = 60/195 (30.77%), Postives = 100/195 (51.28%), Query Frame = 0
Query:   28 ILSTAQLDCRLLPGELIIAHIARQHVLQASWIILKVALFSEEEEEEEAEEEEEEEEGGETRGGLERAGGNELNEYRIRTRQQQAPMRALILDGDGATLVMSQAQYKRVVASGLAHLLHLAPSPWRALEFCLGHTVAEVPGVVNHLAKLMADENISILHHSTYSAEIFLVQAPELASAVRCIRERVDAALHGVLAA 222
            I++T+     LLPG + +  +  +H+   SW +L    F E E                  GG  R   +         R +Q  + +++ + +G TL M  +       +G++ L+ +AP  WRA++  LG  VAE PGVV+ L+KL+ADENISIL+ STY  ++  VQ   L +A+ C++ ++   +HG++ A
Sbjct:    3 IVTTSNFHATLLPGLVSVVFVPVEHIRHGSWPLLNGCSFDENE------------------GGCVRTDSH-------VCRSKQTEIFSIVAEREGTTLFMDPSGVDMFQRAGMSDLITVAPQSWRAIQIHLGPMVAEFPGVVSFLSKLLADENISILNMSTYDTDVIFVQEQHLEAAISCLQTKLSRGMHGLMEA 172          
BLAST of EWM22339.1 vs. NCBI_GenBank
Match: gi|566025663|gb|ETI48574.1| (hypothetical protein F443_07423, partial [Phytophthora parasitica P1569])

HSP 1 Score: 102.834 bits (255), Expect = 6.853e-21
Identity = 60/192 (31.25%), Postives = 101/192 (52.60%), Query Frame = 0
Query:   28 ILSTAQLDCRLLPGELIIAHIARQHVLQASWIILKVALFSEEEEEEEAEEEEEEEEGGETRGGLERAGGNELNEYRIRTRQQQAPMRALILDGDGATLVMSQAQYKRVVASGLAHLLHLAPSPWRALEFCLGHTVAEVPGVVNHLAKLMADENISILHHSTYSAEIFLVQAPELASAVRCIRERVDAALHGV 219
            I++T+     LLPG + +  +  +H+   SW +L + L+S    +E         EGG  R            E  +  R +Q  + +++ D +G TL M  +       +G+   + +AP  WRA++  LG  VAE PGVV+ L+KL+AD++ISIL+ STY  ++  VQ   L +A+ C++ ++   LHG+
Sbjct:    3 IVTTSNFHATLLPGLVSVVFVPAEHIRHGSWPLLNLLLYSGCSFDEN--------EGGCVR-----------TESHV-CRSKQTEIFSIVSDREGTTLFMDPSGIDMFKRAGMEDFITVAPQSWRAIQIHLGPMVAEFPGVVSFLSKLLADDHISILNMSTYDTDVIFVQELHLEAAISCLQSKLSRGLHGL 174          
BLAST of EWM22339.1 vs. NCBI_GenBank
Match: gi|301090423|ref|XP_002895426.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262098656|gb|EEY56708.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 103.605 bits (257), Expect = 1.282e-20
Identity = 70/226 (30.97%), Postives = 113/226 (50.00%), Query Frame = 0
Query:   28 ILSTAQLDCRLLPGELIIAHIARQHVLQASWIILKVALFSEEEEEEEAEEEEEEEEGGETRGGLERAGGNELNEYRIRTRQQQAPMRALILDGDGATLVMSQAQYKRVVASGLAHLLHLAPSPWRALEFCLGHTVAEVPGVVNHLAKLMADENISILHHSTYSAEIFLVQAPELASAVRCIRERVDAALHGVL-AAHAERIGSVRAGTDSEGGSPSYLGSPVKREG 252
            I++T+     LLPG + +  ++ +H+   SW +L + L+S    +E         EGG  R              R   R +Q  + +++ D +G TL M  +       +G+  L+ +AP  WRA++  LG  VAE PGVV+ L+KL+AD++ISIL+ STY  ++  VQ   L +A+ C++ ++   LHG+  A  AE   S R  T S+        +   R G
Sbjct:    3 IVTTSNFHATLLPGLVSVVFVSAEHIRHGSWPLLNLLLYSGCSFDEN--------EGGCLRTE------------RHVCRSKQTEIFSIVSDREGTTLFMDPSGVDMFKHAGMEGLITVAPQSWRAIQIHLGPMVAEFPGVVSFLSKLLADDHISILNMSTYDTDVIFVQELHLEAAISCLQSKLSRGLHGLKEAKDAENALSDRKPTSSDAAESCEEAASASRVG 208          
BLAST of EWM22339.1 vs. NCBI_GenBank
Match: gi|567962984|gb|ETK88492.1| (hypothetical protein L915_07255 [Phytophthora parasitica] >gi|568020933|gb|ETL95044.1| hypothetical protein L917_07089 [Phytophthora parasitica] >gi|568051371|gb|ETM48277.1| hypothetical protein L914_07155 [Phytophthora parasitica])

HSP 1 Score: 103.605 bits (257), Expect = 1.476e-20
Identity = 60/192 (31.25%), Postives = 101/192 (52.60%), Query Frame = 0
Query:   28 ILSTAQLDCRLLPGELIIAHIARQHVLQASWIILKVALFSEEEEEEEAEEEEEEEEGGETRGGLERAGGNELNEYRIRTRQQQAPMRALILDGDGATLVMSQAQYKRVVASGLAHLLHLAPSPWRALEFCLGHTVAEVPGVVNHLAKLMADENISILHHSTYSAEIFLVQAPELASAVRCIRERVDAALHGV 219
            I++T+     LLPG + +  +  +H+   SW +L + L+S    +E         EGG  R            E  +  R +Q  + +++ D +G TL M  +       +G+   + +AP  WRA++  LG  VAE PGVV+ L+KL+AD++ISIL+ STY  ++  VQ   L +A+ C++ ++   LHG+
Sbjct:   23 IVTTSNFHATLLPGLVSVVFVPAEHIRHGSWPLLNLLLYSGCSFDEN--------EGGCVR-----------TESHV-CRSKQTEIFSIVSDREGTTLFMDPSGIDMFKRAGMEDFITVAPQSWRAIQIHLGPMVAEFPGVVSFLSKLLADDHISILNMSTYDTDVIFVQELHLEAAISCLQSKLSRGLHGL 194          
BLAST of EWM22339.1 vs. NCBI_GenBank
Match: gi|675190233|ref|XP_008904001.1| (hypothetical protein PPTG_09956 [Phytophthora parasitica INRA-310] >gi|566007544|gb|ETI30455.1| hypothetical protein F443_22421 [Phytophthora parasitica P1569] >gi|566025637|gb|ETI48548.1| hypothetical protein F443_07427 [Phytophthora parasitica P1569] >gi|567991689|gb|ETL41890.1| hypothetical protein L916_07202 [Phytophthora parasitica] >gi|568096159|gb|ETN10914.1| hypothetical protein PPTG_09956 [Phytophthora parasitica INRA-310] >gi|570329374|gb|ETO77322.1| hypothetical protein F444_07455 [Phytophthora parasitica P1976] >gi|570953092|gb|ETP18349.1| hypothetical protein F441_07406 [Phytophthora parasitica CJ01A1] >gi|570987596|gb|ETP46260.1| hypothetical protein F442_07460 [Phytophthora parasitica P10297] >gi|970626693|gb|KUF74552.1| GATS protein 3 [Phytophthora nicotianae])

HSP 1 Score: 102.834 bits (255), Expect = 2.272e-20
Identity = 60/192 (31.25%), Postives = 101/192 (52.60%), Query Frame = 0
Query:   28 ILSTAQLDCRLLPGELIIAHIARQHVLQASWIILKVALFSEEEEEEEAEEEEEEEEGGETRGGLERAGGNELNEYRIRTRQQQAPMRALILDGDGATLVMSQAQYKRVVASGLAHLLHLAPSPWRALEFCLGHTVAEVPGVVNHLAKLMADENISILHHSTYSAEIFLVQAPELASAVRCIRERVDAALHGV 219
            I++T+     LLPG + +  +  +H+   SW +L + L+S    +E         EGG  R            E  +  R +Q  + +++ D +G TL M  +       +G+   + +AP  WRA++  LG  VAE PGVV+ L+KL+AD++ISIL+ STY  ++  VQ   L +A+ C++ ++   LHG+
Sbjct:    3 IVTTSNFHATLLPGLVSVVFVPAEHIRHGSWPLLNLLLYSGCSFDEN--------EGGCVR-----------TESHV-CRSKQTEIFSIVSDREGTTLFMDPSGIDMFKRAGMEDFITVAPQSWRAIQIHLGPMVAEFPGVVSFLSKLLADDHISILNMSTYDTDVIFVQELHLEAAISCLQSKLSRGLHGL 174          
BLAST of EWM22339.1 vs. NCBI_GenBank
Match: gi|698792592|ref|XP_009829328.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574115985|gb|ETV81470.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 102.064 bits (253), Expect = 2.273e-20
Identity = 69/208 (33.17%), Postives = 101/208 (48.56%), Query Frame = 0
Query:   28 ILSTAQLDCRLLPGELIIAHIARQHVLQASWIILKVALFSEEEEEEEAEEEEEEEEGGETRGGLERAGGNELNEYRIRTRQQQAPMRALILDGDGATLVMSQAQYKRVVASGLAHLLHLAPSPWRALEFCLGHTVAEVPGVVNHLAKLMADENISILHHSTYSAEIFLVQAPELASAVRCIRERVDAALHGVLAAHAERIGSVRAGTD 235
            ++ST+     LLPGEL +  I   HV    W +L + L+                  GE       A     +      R QQ  + ++++D DG TL +         A+ L   +H AP  WRA++  LG  VAE PGVV+ L+KL+A++NISIL+ STY  +I  VQA +L  AV C++ ++   + G L A  E    +R G D
Sbjct:    7 LVSTSNFHATLLPGELSVIQIPPAHVRACCWPLLNLLLY------------------GECSLNCREADATSGDHI---CRLQQTELFSMVVDNDGITLFVDPNGINMFKAANLQDKIHTAPQHWRAIQIHLGPMVAEFPGVVSFLSKLLAEDNISILNMSTYDTDIIYVQACKLDLAVACLQRKLSRGVTG-LKADMESECELRLGVD 192          
BLAST of EWM22339.1 vs. NCBI_GenBank
Match: gi|970664891|gb|KUG01691.1| (GATS protein 3 [Phytophthora nicotianae])

HSP 1 Score: 102.834 bits (255), Expect = 2.383e-20
Identity = 60/192 (31.25%), Postives = 101/192 (52.60%), Query Frame = 0
Query:   28 ILSTAQLDCRLLPGELIIAHIARQHVLQASWIILKVALFSEEEEEEEAEEEEEEEEGGETRGGLERAGGNELNEYRIRTRQQQAPMRALILDGDGATLVMSQAQYKRVVASGLAHLLHLAPSPWRALEFCLGHTVAEVPGVVNHLAKLMADENISILHHSTYSAEIFLVQAPELASAVRCIRERVDAALHGV 219
            I++T+     LLPG + +  +  +H+   SW +L + L+S    +E         EGG  R            E  +  R +Q  + +++ D +G TL M  +       +G+   + +AP  WRA++  LG  VAE PGVV+ L+KL+AD++ISIL+ STY  ++  VQ   L +A+ C++ ++   LHG+
Sbjct:    3 IVTTSNFHATLLPGLVSVVFVPAEHIRHGSWPLLNLLLYSGCSFDEN--------EGGCVR-----------TESHV-CRSKQTEIFSIVSDREGTTLFMDPSGIDMFKRAGMEDFITVAPQSWRAIQIHLGPMVAEFPGVVSFLSKLLADDHISILNMSTYDTDVIFVQELHLEAAISCLQSKLSRGLHGL 174          
BLAST of EWM22339.1 vs. NCBI_GenBank
Match: gi|698792590|ref|XP_009829327.1| (hypothetical protein H257_05983 [Aphanomyces astaci] >gi|574115984|gb|ETV81469.1| hypothetical protein H257_05983 [Aphanomyces astaci])

HSP 1 Score: 101.679 bits (252), Expect = 6.625e-20
Identity = 69/208 (33.17%), Postives = 101/208 (48.56%), Query Frame = 0
Query:   28 ILSTAQLDCRLLPGELIIAHIARQHVLQASWIILKVALFSEEEEEEEAEEEEEEEEGGETRGGLERAGGNELNEYRIRTRQQQAPMRALILDGDGATLVMSQAQYKRVVASGLAHLLHLAPSPWRALEFCLGHTVAEVPGVVNHLAKLMADENISILHHSTYSAEIFLVQAPELASAVRCIRERVDAALHGVLAAHAERIGSVRAGTD 235
            ++ST+     LLPGEL +  I   HV    W +L + L+                  GE       A     +      R QQ  + ++++D DG TL +         A+ L   +H AP  WRA++  LG  VAE PGVV+ L+KL+A++NISIL+ STY  +I  VQA +L  AV C++ ++   + G L A  E    +R G D
Sbjct:    7 LVSTSNFHATLLPGELSVIQIPPAHVRACCWPLLNLLLY------------------GECSLNCREADATSGDHI---CRLQQTELFSMVVDNDGITLFVDPNGINMFKAANLQDKIHTAPQHWRAIQIHLGPMVAEFPGVVSFLSKLLAEDNISILNMSTYDTDIIYVQACKLDLAVACLQRKLSRGVTG-LKADMESECELRLGVD 192          
The following BLAST results are available for this feature:
BLAST of EWM22339.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102837|gb|EWM22339.1|0.000e+0100.00hypothetical protein Naga_100277g6 [Nannochloropsi... [more]
gi|553189547|ref|XP_005855023.1|9.627e-6794.02hypothetical protein NGA_0402600, partial [Nannoch... [more]
gi|1214705257|gb|OWZ16983.1|5.524e-2130.77hypothetical protein PHMEG_0009140 [Phytophthora m... [more]
gi|566025663|gb|ETI48574.1|6.853e-2131.25hypothetical protein F443_07423, partial [Phytopht... [more]
gi|301090423|ref|XP_002895426.1|1.282e-2030.97conserved hypothetical protein [Phytophthora infes... [more]
gi|567962984|gb|ETK88492.1|1.476e-2031.25hypothetical protein L915_07255 [Phytophthora para... [more]
gi|675190233|ref|XP_008904001.1|2.272e-2031.25hypothetical protein PPTG_09956 [Phytophthora para... [more]
gi|698792592|ref|XP_009829328.1|2.273e-2033.17hypothetical protein, variant [Aphanomyces astaci]... [more]
gi|970664891|gb|KUG01691.1|2.383e-2031.25GATS protein 3 [Phytophthora nicotianae][more]
gi|698792590|ref|XP_009829327.1|6.625e-2033.17hypothetical protein H257_05983 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8365rna8365Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications