rna8364, rna8364 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8364
Unique Name	rna8364
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	810
Alignment location	KK037248.1:489435..491777 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100277g5.2160.mrna
Orig protein id	gnl\|cribi\|Naga_100277g5.2160
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:489435..491777 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100277g5	gene8104	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22336.1	cds8337	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8364	rna8364-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:489435..491777-
coding sequence from alignment at KK037248.1:489435..491777-

mRNA sequence

>rna8364 ID=rna8364|Name=rna8364|organism=Nannochloropsis gaditana|type=mRNA|length=810bp
ATGGTGCGACCGATATTTCCAGAGCAACACGGGAAAAATCGAAAACGTAA
GAATAGCTTTTCTAAGTTACCCGCATGTGGCTGTGTGCCTTGGATACCAC
ACAGGCAAACACTAAAAATAAAAATCAGCATGGCACCATTCCCCTCGCTA
CGCCTCATCTATTTTGATTTTGGCGGTCGAGCGGAAGCTATTCGTGTTGC
CTTACACGTGGGTAAGGTGCCTTTCGAAGATGTCAGGATAACTGAACAGG
AGTTCAGTCAGCAAAAAGCTGCTGGCAAATATCCATTCGGGAGCGTCCCT
GTCTTGGAAGTTGACAGTGTGGCGTACGCACAGTCCGTTGGCATCTTGCG
GTACGTTGGTAGGCTCGGAGGCCTGTACCCTGAGGATCCTCTTGCGGGCT
TAGCTATTGATCAAGTTGTGGGCAGTGTGGAAGACATTGTAGTAGCGACT
GTTCCTTACCTATTCGCTTCTGAGTCCGAAAAGGCGTCATTGAAGGACAA
ATTGGAAAAAAATGTCTACCCTCGGTTTTTCTCGGCTTTTGAACGACTCT
TGCATGCAGATGAGGAGGGCTTTTTTGTCGGCAAGCATTTGACCATCGCC
GATTTAGCAGTATACCCAATATTGCAATGGATCACTACTTCCATCGTGGG
GCCTGAATCTTTGGACCCTTTCCCTTTGCTGAAGGCGTTGTTTCGTAAGA
TAGAAGAACACGAGATGGTTAAGGATTATTACGAACAAGAGAGGCGAAAT
TCTCATAAAGAGGGACCGGAAGCAGGAAAAATGAATACGGAAAGTAACAA
GGGAAAATGA

protein sequence of rna8364

>rna8364-protein ID=rna8364-protein|Name=rna8364|organism=Nannochloropsis gaditana|type=polypeptide|length=780bp
MPLPSQQQLYLDFLIPTSTTDIGTMRRHGTDIKMFWAPVLVISLMVAPAS
TWGFYLLPVSSLLNGRLTSRPPSTALASQQPPPSGRDSGEYIPQSYGLKE
EAEDPYLVSLKRGEPPRREAGVGSTSASPVGPSHASQTRTPEEIKALNEA
AKARMEAYARGEKPPGFGASPPVPSGFTPSTPNTPEGFNPNKFMDFYREH
EAKLAAENAAKAAETPAQAAVPRPQGAPIMPGVPEPYQPPPQYQQQPSPA
QLQAQEEQAKGSPQSYESHGGSRFKGVFDAAAAAGSTNPAKERLKQYLLS
RYAPDDMSEQAVNYRRLIQFADTGGGYSGSSTEDSDEAYLAQLKADAREK
IRNNPWQTVRREELAPSEKGVPLPPLAPTPEPTGTQAAARQDAGLGRPPP
PPSMSESSPPPPPPGWIPPPLPPPSTTPPSAYASPHSYTPSPAQIPSPPP
PFPPSRGPSPPALAQMGIESSMTQLGAYLTAHKATGERLQGQDLDRLESL
LTSVGAMLEREGRRLGSRPAYSEEEGPGVPVQGFLVEREEREVLLATAAS
LQALAGLGADEEGALAAGREVPRLQVLLRRALAVVDGPSGGKAPEYSQKS
GASPLSEAFSGPAAVQGPGAMPWPQSVRDVPFPVPASPSLTPPPSPPSPP
SSAPPPSLDTVELSSEDRAKLQGTMALVLKHSGAFGKMSGPLRGEELGLL
KSVLNDTMAVLRKETETAYDCSVEKYLEDHPHAMEELAEAQAAAASTGSQ
FTVMNVPAPAAGKPKSYKELLSEARQKKKS

mRNA from alignment at KK037248.1:489435..491777-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8364 ID=rna8364|Name=rna8364|organism=Nannochloropsis gaditana|type=mRNA|length=2343bp|location=Sequence derived from alignment at KK037248.1:489435..491777- (Nannochloropsis gaditana)
ATGCCGCTGCCCTCTCAACAGCAACTTTACCTTGATTTTTTGATTCCAAC
GTCCACGACCGACATAGGTACCATGAGACGACATGGCACGGACATTAAAA
TGTTTTGGGCACCTGTCTTGGTAATCTCATTGATGGTGGCACCGGCCAGC
ACGTGGGGCTTCTACCTCCTCCCAGTCTCCTCCTTGCTCAACGGGCGGTT
GACTTCCAGACCGCCGTCCACCGCCCTGGCATCCCAGCAGCCACCTCCAT
CGGGCCGAGATAGCGGAGAGTACATACCACAGTCCTACGGGTTGAAAGAG
GAGGCGGAAGATCCCTACCTCGTGTCCCTCAAGCGTGGCGAGCCTCCTCG
TCGGGAGGCTGGCGTTGGTTCCACGAGTGCATCGCCCGTGGGACCTTCGC
ACGCTAGCCAGACACGGACGCCTGAGGAGATCAAGGCCTTGAATGAGGCG
GCCAAGGCACGCATGGAAGCCTACGCGCGGGGCGAGAAACCGCCCGGATT
TGGAGCATCCCCGCCTGTCCCTTCTGGTTTCACCCCCTCCACCCCCAATA
CCCCGGAGGGTTTTAACCCCAACAAATTCATGGATTTCTACCGGGAGCAC
GAGGCCAAGCTGGCGGCTGAAAACGCCGCAAAGGCCGCCGAGACCCCGGC
GCAAGCTGCAGTCCCTCGACCTCAAGGAGCCCCTATCATGCCGGGCGTGC
CCGAGCCTTACCAACCTCCGCCCCAATACCAACAGCAACCGTCCCCCGCC
CAACTCCAGGCACAAGAAGAGCAAGCAAAGGGCTCTCCCCAAAGCTACGA
GTCTCACGGAGGTTCCCGGTTCAAGGGGGTTTTTGACGCGGCCGCCGCCG
CCGGATCCACGAATCCGGCCAAGGAGAGGTTGAAGCAGTACCTGCTCTCC
CGCTACGCCCCCGACGATATGTCCGAGCAGGCCGTAAATTACCGACGGCT
CATCCAATTCGCGGACACGGGCGGCGGGTACTCGGGCTCGTCGACGGAGG
ACTCGGACGAGGCCTACCTGGCCCAGCTCAAAGCGGACGCTCGGGAGAAG
ATCCGCAACAACCCCTGGCAGACGGTGCGGAGGGAGGAGCTGGCCCCCTC
CGAGAAAGGCGTGCCCCTGCCCCCCCTGGCCCCAACACCCGAACCCACCG
GGACCCAGGCAGCAGCCCGTCAGGACGCTGGCCTGGGACGCCCCCCCCCG
CCTCCATCCATGTCAGAGAGCTCCCCTCCCCCCCCCCCTCCGGGATGGAT
TCCTCCTCCCCTGCCCCCGCCCTCGACGACTCCTCCTTCTGCCTACGCCT
CCCCTCATTCTTACACGCCTTCCCCCGCACAAATTCCCTCCCCTCCTCCC
CCGTTCCCTCCCTCCCGCGGCCCCTCCCCCCCCGCGCTCGCCCAAATGGG
CATAGAGAGCTCTATGACCCAGCTGGGAGCCTACTTGACCGCCCACAAGG
CCACGGGGGAACGCTTACAAGGCCAAGATTTGGACCGGCTCGAGTCCCTC
CTGACTTCCGTGGGCGCCATGCTGGAACGGGAGGGCCGGCGCTTGGGCTC
CCGCCCAGCCTACTCGGAGGAAGAGGGTCCAGGCGTTCCAGTGCAGGGGT
TCCTGGTGGAGAGGGAGGAAAGGGAGGTGTTGCTGGCGACAGCGGCAAGT
CTGCAGGCCCTAGCGGGGCTGGGTGCGGACGAAGAGGGTGCCTTGGCCGC
TGGACGGGAGGTGCCCCGCTTGCAGGTTCTCTTGAGACGTGCTCTGGCCG
TAGTGGACGGGCCTTCGGGAGGAAAAGCCCCGGAGTACTCACAGAAATCT
GGCGCGTCGCCTCTGTCCGAAGCCTTCTCGGGCCCGGCGGCTGTGCAGGG
ACCTGGGGCCATGCCATGGCCGCAGTCAGTACGTGACGTTCCCTTCCCGG
TCCCCGCCTCCCCGTCCCTCACCCCACCACCTTCACCTCCTTCTCCCCCT
TCCTCCGCCCCGCCTCCCTCCTTAGACACGGTGGAGCTGAGCAGTGAGGA
TCGGGCGAAATTGCAAGGGACGATGGCCTTGGTGTTGAAGCACTCGGGGG
CCTTTGGGAAAATGAGCGGGCCGTTACGGGGGGAGGAACTCGGCTTGTTA
AAGAGTGTACTGAATGACACCATGGCTGTTTTGAGAAAGGAAACCGAAAC
AGCTTACGATTGCAGTGTGGAAAAATATTTGGAAGACCATCCGCACGCAA
TGGAGGAGCTGGCGGAGGCCCAAGCGGCAGCAGCAAGCACCGGGTCACAA
TTCACCGTGATGAACGTCCCCGCGCCGGCCGCGGGGAAGCCAAAATCATA
CAAGGAATTGCTGAGCGAGGCCAGGCAAAAGAAAAAGTCATAA

Coding sequence (CDS) from alignment at KK037248.1:489435..491777-

>rna8364 ID=rna8364|Name=rna8364|organism=Nannochloropsis gaditana|type=CDS|length=2343bp|location=Sequence derived from alignment at KK037248.1:489435..491777- (Nannochloropsis gaditana)
ATGCCGCTGCCCTCTCAACAGCAACTTTACCTTGATTTTTTGATTCCAAC
GTCCACGACCGACATAGGTACCATGAGACGACATGGCACGGACATTAAAA
TGTTTTGGGCACCTGTCTTGGTAATCTCATTGATGGTGGCACCGGCCAGC
ACGTGGGGCTTCTACCTCCTCCCAGTCTCCTCCTTGCTCAACGGGCGGTT
GACTTCCAGACCGCCGTCCACCGCCCTGGCATCCCAGCAGCCACCTCCAT
CGGGCCGAGATAGCGGAGAGTACATACCACAGTCCTACGGGTTGAAAGAG
GAGGCGGAAGATCCCTACCTCGTGTCCCTCAAGCGTGGCGAGCCTCCTCG
TCGGGAGGCTGGCGTTGGTTCCACGAGTGCATCGCCCGTGGGACCTTCGC
ACGCTAGCCAGACACGGACGCCTGAGGAGATCAAGGCCTTGAATGAGGCG
GCCAAGGCACGCATGGAAGCCTACGCGCGGGGCGAGAAACCGCCCGGATT
TGGAGCATCCCCGCCTGTCCCTTCTGGTTTCACCCCCTCCACCCCCAATA
CCCCGGAGGGTTTTAACCCCAACAAATTCATGGATTTCTACCGGGAGCAC
GAGGCCAAGCTGGCGGCTGAAAACGCCGCAAAGGCCGCCGAGACCCCGGC
GCAAGCTGCAGTCCCTCGACCTCAAGGAGCCCCTATCATGCCGGGCGTGC
CCGAGCCTTACCAACCTCCGCCCCAATACCAACAGCAACCGTCCCCCGCC
CAACTCCAGGCACAAGAAGAGCAAGCAAAGGGCTCTCCCCAAAGCTACGA
GTCTCACGGAGGTTCCCGGTTCAAGGGGGTTTTTGACGCGGCCGCCGCCG
CCGGATCCACGAATCCGGCCAAGGAGAGGTTGAAGCAGTACCTGCTCTCC
CGCTACGCCCCCGACGATATGTCCGAGCAGGCCGTAAATTACCGACGGCT
CATCCAATTCGCGGACACGGGCGGCGGGTACTCGGGCTCGTCGACGGAGG
ACTCGGACGAGGCCTACCTGGCCCAGCTCAAAGCGGACGCTCGGGAGAAG
ATCCGCAACAACCCCTGGCAGACGGTGCGGAGGGAGGAGCTGGCCCCCTC
CGAGAAAGGCGTGCCCCTGCCCCCCCTGGCCCCAACACCCGAACCCACCG
GGACCCAGGCAGCAGCCCGTCAGGACGCTGGCCTGGGACGCCCCCCCCCG
CCTCCATCCATGTCAGAGAGCTCCCCTCCCCCCCCCCCTCCGGGATGGAT
TCCTCCTCCCCTGCCCCCGCCCTCGACGACTCCTCCTTCTGCCTACGCCT
CCCCTCATTCTTACACGCCTTCCCCCGCACAAATTCCCTCCCCTCCTCCC
CCGTTCCCTCCCTCCCGCGGCCCCTCCCCCCCCGCGCTCGCCCAAATGGG
CATAGAGAGCTCTATGACCCAGCTGGGAGCCTACTTGACCGCCCACAAGG
CCACGGGGGAACGCTTACAAGGCCAAGATTTGGACCGGCTCGAGTCCCTC
CTGACTTCCGTGGGCGCCATGCTGGAACGGGAGGGCCGGCGCTTGGGCTC
CCGCCCAGCCTACTCGGAGGAAGAGGGTCCAGGCGTTCCAGTGCAGGGGT
TCCTGGTGGAGAGGGAGGAAAGGGAGGTGTTGCTGGCGACAGCGGCAAGT
CTGCAGGCCCTAGCGGGGCTGGGTGCGGACGAAGAGGGTGCCTTGGCCGC
TGGACGGGAGGTGCCCCGCTTGCAGGTTCTCTTGAGACGTGCTCTGGCCG
TAGTGGACGGGCCTTCGGGAGGAAAAGCCCCGGAGTACTCACAGAAATCT
GGCGCGTCGCCTCTGTCCGAAGCCTTCTCGGGCCCGGCGGCTGTGCAGGG
ACCTGGGGCCATGCCATGGCCGCAGTCAGTACGTGACGTTCCCTTCCCGG
TCCCCGCCTCCCCGTCCCTCACCCCACCACCTTCACCTCCTTCTCCCCCT
TCCTCCGCCCCGCCTCCCTCCTTAGACACGGTGGAGCTGAGCAGTGAGGA
TCGGGCGAAATTGCAAGGGACGATGGCCTTGGTGTTGAAGCACTCGGGGG
CCTTTGGGAAAATGAGCGGGCCGTTACGGGGGGAGGAACTCGGCTTGTTA
AAGAGTGTACTGAATGACACCATGGCTGTTTTGAGAAAGGAAACCGAAAC
AGCTTACGATTGCAGTGTGGAAAAATATTTGGAAGACCATCCGCACGCAA
TGGAGGAGCTGGCGGAGGCCCAAGCGGCAGCAGCAAGCACCGGGTCACAA
TTCACCGTGATGAACGTCCCCGCGCCGGCCGCGGGGAAGCCAAAATCATA
CAAGGAATTGCTGAGCGAGGCCAGGCAAAAGAAAAAGTCATAA

Synonyms

Publications