EWM22336.1, cds8337 (CDS) Nannochloropsis gaditana

Overview
NameEWM22336.1
Unique Namecds8337
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:489435..491777 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22336.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100277g5.2160.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:489435..491777 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM22336.1 vs. NCBI_GenBank
Match: gi|585102834|gb|EWM22336.1| (hypothetical protein Naga_100277g5 [Nannochloropsis gaditana])

HSP 1 Score: 1536.93 bits (3978), Expect = 0.000e+0
Identity = 780/780 (100.00%), Postives = 780/780 (100.00%), Query Frame = 0 
Query:    1 MPLPSQQQLYLDFLIPTSTTDIGTMRRHGTDIKMFWAPVLVISLMVAPASTWGFYLLPVSSLLNGRLTSRPPSTALASQQPPPSGRDSGEYIPQSYGLKEEAEDPYLVSLKRGEPPRREAGVGSTSASPVGPSHASQTRTPEEIKALNEAAKARMEAYARGEKPPGFGASPPVPSGFTPSTPNTPEGFNPNKFMDFYREHEAKLAAENAAKAAETPAQAAVPRPQGAPIMPGVPEPYQPPPQYQQQPSPAQLQAQEEQAKGSPQSYESHGGSRFKGVFDAAAAAGSTNPAKERLKQYLLSRYAPDDMSEQAVNYRRLIQFADTGGGYSGSSTEDSDEAYLAQLKADAREKIRNNPWQTVRREELAPSEKGVPLPPLAPTPEPTGTQAAARQDAGLGRPPPPPSMSESSPPPPPPGWIPPPLPPPSTTPPSAYASPHSYTPSPAQIPSPPPPFPPSRGPSPPALAQMGIESSMTQLGAYLTAHKATGERLQGQDLDRLESLLTSVGAMLEREGRRLGSRPAYSEEEGPGVPVQGFLVEREEREVLLATAASLQALAGLGADEEGALAAGREVPRLQVLLRRALAVVDGPSGGKAPEYSQKSGASPLSEAFSGPAAVQGPGAMPWPQSVRDVPFPVPASPSLTPPPSPPSPPSSAPPPSLDTVELSSEDRAKLQGTMALVLKHSGAFGKMSGPLRGEELGLLKSVLNDTMAVLRKETETAYDCSVEKYLEDHPHAMEELAEAQAAAASTGSQFTVMNVPAPAAGKPKSYKELLSEARQKKKS 780
            MPLPSQQQLYLDFLIPTSTTDIGTMRRHGTDIKMFWAPVLVISLMVAPASTWGFYLLPVSSLLNGRLTSRPPSTALASQQPPPSGRDSGEYIPQSYGLKEEAEDPYLVSLKRGEPPRREAGVGSTSASPVGPSHASQTRTPEEIKALNEAAKARMEAYARGEKPPGFGASPPVPSGFTPSTPNTPEGFNPNKFMDFYREHEAKLAAENAAKAAETPAQAAVPRPQGAPIMPGVPEPYQPPPQYQQQPSPAQLQAQEEQAKGSPQSYESHGGSRFKGVFDAAAAAGSTNPAKERLKQYLLSRYAPDDMSEQAVNYRRLIQFADTGGGYSGSSTEDSDEAYLAQLKADAREKIRNNPWQTVRREELAPSEKGVPLPPLAPTPEPTGTQAAARQDAGLGRPPPPPSMSESSPPPPPPGWIPPPLPPPSTTPPSAYASPHSYTPSPAQIPSPPPPFPPSRGPSPPALAQMGIESSMTQLGAYLTAHKATGERLQGQDLDRLESLLTSVGAMLEREGRRLGSRPAYSEEEGPGVPVQGFLVEREEREVLLATAASLQALAGLGADEEGALAAGREVPRLQVLLRRALAVVDGPSGGKAPEYSQKSGASPLSEAFSGPAAVQGPGAMPWPQSVRDVPFPVPASPSLTPPPSPPSPPSSAPPPSLDTVELSSEDRAKLQGTMALVLKHSGAFGKMSGPLRGEELGLLKSVLNDTMAVLRKETETAYDCSVEKYLEDHPHAMEELAEAQAAAASTGSQFTVMNVPAPAAGKPKSYKELLSEARQKKKS
Sbjct:    1 MPLPSQQQLYLDFLIPTSTTDIGTMRRHGTDIKMFWAPVLVISLMVAPASTWGFYLLPVSSLLNGRLTSRPPSTALASQQPPPSGRDSGEYIPQSYGLKEEAEDPYLVSLKRGEPPRREAGVGSTSASPVGPSHASQTRTPEEIKALNEAAKARMEAYARGEKPPGFGASPPVPSGFTPSTPNTPEGFNPNKFMDFYREHEAKLAAENAAKAAETPAQAAVPRPQGAPIMPGVPEPYQPPPQYQQQPSPAQLQAQEEQAKGSPQSYESHGGSRFKGVFDAAAAAGSTNPAKERLKQYLLSRYAPDDMSEQAVNYRRLIQFADTGGGYSGSSTEDSDEAYLAQLKADAREKIRNNPWQTVRREELAPSEKGVPLPPLAPTPEPTGTQAAARQDAGLGRPPPPPSMSESSPPPPPPGWIPPPLPPPSTTPPSAYASPHSYTPSPAQIPSPPPPFPPSRGPSPPALAQMGIESSMTQLGAYLTAHKATGERLQGQDLDRLESLLTSVGAMLEREGRRLGSRPAYSEEEGPGVPVQGFLVEREEREVLLATAASLQALAGLGADEEGALAAGREVPRLQVLLRRALAVVDGPSGGKAPEYSQKSGASPLSEAFSGPAAVQGPGAMPWPQSVRDVPFPVPASPSLTPPPSPPSPPSSAPPPSLDTVELSSEDRAKLQGTMALVLKHSGAFGKMSGPLRGEELGLLKSVLNDTMAVLRKETETAYDCSVEKYLEDHPHAMEELAEAQAAAASTGSQFTVMNVPAPAAGKPKSYKELLSEARQKKKS 780
[Close]
BLAST of EWM22336.1 vs. NCBI_GenBank
Match: gi|553189556|ref|XP_005855025.1| (hypothetical protein NGA_0402800, partial [Nannochloropsis gaditana CCMP526] >gi|422294037|gb|EKU21337.1| hypothetical protein NGA_0402800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 673.7 bits (1737), Expect = 0.000e+0
Identity = 333/334 (99.70%), Postives = 334/334 (100.00%), Query Frame = 0 
Query:   25 MRRHGTDIKMFWAPVLVISLMVAPASTWGFYLLPVSSLLNGRLTSRPPSTALASQQPPPSGRDSGEYIPQSYGLKEEAEDPYLVSLKRGEPPRREAGVGSTSASPVGPSHASQTRTPEEIKALNEAAKARMEAYARGEKPPGFGASPPVPSGFTPSTPNTPEGFNPNKFMDFYREHEAKLAAENAAKAAETPAQAAVPRPQGAPIMPGVPEPYQPPPQYQQQPSPAQLQAQEEQAKGSPQSYESHGGSRFKGVFDAAAAAGSTNPAKERLKQYLLSRYAPDDMSEQAVNYRRLIQFADTGGGYSGSSTEDSDEAYLAQLKADAREKIRNNPWQT 358
            MRRHGTDIKMFWAPVLVISLMVAPASTWGFYLLPVSSLLNGRLTSRPPSTALASQQPPPSGRDSGEYIPQSYGL+EEAEDPYLVSLKRGEPPRREAGVGSTSASPVGPSHASQTRTPEEIKALNEAAKARMEAYARGEKPPGFGASPPVPSGFTPSTPNTPEGFNPNKFMDFYREHEAKLAAENAAKAAETPAQAAVPRPQGAPIMPGVPEPYQPPPQYQQQPSPAQLQAQEEQAKGSPQSYESHGGSRFKGVFDAAAAAGSTNPAKERLKQYLLSRYAPDDMSEQAVNYRRLIQFADTGGGYSGSSTEDSDEAYLAQLKADAREKIRNNPWQT
Sbjct:    1 MRRHGTDIKMFWAPVLVISLMVAPASTWGFYLLPVSSLLNGRLTSRPPSTALASQQPPPSGRDSGEYIPQSYGLEEEAEDPYLVSLKRGEPPRREAGVGSTSASPVGPSHASQTRTPEEIKALNEAAKARMEAYARGEKPPGFGASPPVPSGFTPSTPNTPEGFNPNKFMDFYREHEAKLAAENAAKAAETPAQAAVPRPQGAPIMPGVPEPYQPPPQYQQQPSPAQLQAQEEQAKGSPQSYESHGGSRFKGVFDAAAAAGSTNPAKERLKQYLLSRYAPDDMSEQAVNYRRLIQFADTGGGYSGSSTEDSDEAYLAQLKADAREKIRNNPWQT 334
The following BLAST results are available for this feature:
BLAST of EWM22336.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585102834|gb|EWM22336.1|0.000e+0100.00hypothetical protein Naga_100277g5 [Nannochloropsi... [more]
gi|553189556|ref|XP_005855025.1|0.000e+099.70hypothetical protein NGA_0402800, partial [Nannoch... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8364rna8364Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications