rna8362, rna8362 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8362
Unique Name	rna8362
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1041
Alignment location	KK037248.1:486016..487998 -

Link to JBrowse

Properties


Property Name	Value
Product	metalloprotease family
Orig transcript id	gnl\|cribi\|Naga_100277g3.2159.mrna
Orig protein id	gnl\|cribi\|Naga_100277g3.2159
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:486016..487998 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100277g3	gene8102	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8362	rna8362-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22335.1	cds8335	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:486016..487998-
coding sequence from alignment at KK037248.1:486016..487998-

mRNA sequence

>rna8362 ID=rna8362|Name=rna8362|organism=Nannochloropsis gaditana|type=mRNA|length=1041bp
ATGCACCCAGAGGCCCGAACCCCCCCTTCCCCCACCCCTCCCCGCTCCAT
ATCCCTCGCCTCCCTCTCTTTCCTCACGGTTCTCTCCCTGAAGCTCCTCT
CCATGCTCCTCTACCACGCCCTCGGCCCCGTCTTCAACCGCTCCCTCCCT
TCCCACCTGGCGGCAGAGGGGCCCTCCCTCCTAGGCGTAGATCACGTGCT
TCGGGTGCCGGTGCCCCCTCCTGGAAAGGGAGGGAGGAATCGAGGCGGGG
ACAGGGACGAATTGGGCGACGATTCTCTTTTCATGACGCTCTTGGTCAAG
AAAGCTCTGCCTCCAGCAGGAGAGGGAGGGGAGTGGCAAGGGGAGGGAGG
AGGCGGGAGCAAAGGTGGTGTCGTAAGGGAGGAAAAGGGTAAAGGCAACC
TCCCCCCCCTCCTCTTCCTCCTGCACGGCTTTCCCGACGACGCCAGCACC
TTCCATGCGCAGGTTCTCCCCTTTGCTCGCGCCGGTTTCGACGTCCTCCT
CCCCGTCATGCCCGGGTACGAGCCCAGCACAGCCCTCCTTCCCTCCTCAT
CATACTCCCTCCCGTCCCTTGCTACCATGCTAGAAGATGTGATAGCCTGG
GCGCAGTCGCCTGCCCTGGCCCGTGCGTTGCGCGGAGGGGAAGCAGAGGG
TGGGAAAGGGGAGGAGGGACAGCAAGGGGGGTGGTTGGAGGAAGGGGGAA
TCGGGGAGGAAGAATGCAGGAACCCACTTCCGCGCGACGTGCACCTGTTT
GGCCACGATTGGGGCGCCGTGCTTGCCTACATATTGGCGCGAAAGGGGAG
CAGGGAAAAAGTTCGCGTGACCTCGGTGGTCACCGTGGCCGTCCCTCACG
AGGCCGCCCGAGGCTTCCTCACGCATCCTCGCCAGTTCCTGAATTCCTGG
TACATGCTCTTCATTGTGAGTGGACCGAAGGAGGGAGGGATGGAGTATCG
TGCGGGAGGAGGGGGATGTACCCGTTGCTGTTTCTTCTCAGGTGCCGGGA
GGCGGAAAAGGCCACGTTTTGCAGGGACTTTCGGAGGTTGA

protein sequence of rna8362

>rna8362-protein ID=rna8362-protein|Name=rna8362|organism=Nannochloropsis gaditana|type=polypeptide|length=344bp
MKYLWEDGILRESRRETFTKKRSTIRRMDCLKCKASLKAIMARPRPKALL
DALADTGIQTLENVPESRRAAIAASTQRHQGTGQPDREGGILRGNTGPGD
HGGRERGLAEQGGGGGGSTLNIKCINCAEEGLAMKARAYMEAPPMSVVLC
ANRLQDRREMEEALVHELVHVYDHALVQMDLTTCKDLAYSEVRAAREAEC
HYTPQLCSWFKKQCVQSTATRSTATIFPTEGAACVAAVFEKAYRDVGPKK
LHGDLAIGAGESGGGRLLGGVAKPAPSPASRAATAASLPSRMFPAFPGSS
SSPSSSPRVSLFPLSHAQSEGGLAKALAGAFGLGSPGAKEGSRA

mRNA from alignment at KK037248.1:486016..487998-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8362 ID=rna8362|Name=rna8362|organism=Nannochloropsis gaditana|type=mRNA|length=1983bp|location=Sequence derived from alignment at KK037248.1:486016..487998- (Nannochloropsis gaditana)
ATGAAGTACCTCTGGGAGGATGGAATTTTACGCGAGAGTAGACGTGAGAC
TTTTACCAAAAAAAGGAGTACAATGTGATGACTATATGCTGTCTCATTAT
GTCGTATATTATTTGTCTACACATAGTTGATACTTGTCTCGCCTCTTCAG
GAGAGGAAGTAAGCACACAGCTCACATTACTCCATTTCCACTTGCTCTTG
GAACTGCCCTCCGCATGCTTCTCATGCTCAGTAAAATCTCGGCGACTTTG
TGTGATCCATCGTAAAAGCTACAAAAAATCAGTGAGAGGCGTTCCATTCA
CGCACTTCCTGAAGCCTTTCTTTAAACACGTACGTAGCACAGGGATGCCA
CAGCATCCTACCCGGATGTGTCCATTAGCAACAGCACATCAGCCATTGAC
AAGCAAGCAAACCATGCTTTTTCCCTAAATCAATCCCTGCCTTCCCTCAG
TGAAAAGAGTTATTGGCCTGTAAACTTTTCGACTCTTTGCAGACGAGGTC
GGCGCCCCTCAAAACATGGTTGCCACGGCTTTGCCGCCGTCACGGGAGCG
ACGTGGACGACAGCCTGAAGGGAGATGACAGATTGGCTTGCTCGACCTTT
CTCCCCATATTTCTGAATGTGAAGGAGCCGCATGCATCGACACGAGTGCA
GAGCATTTAAATCCAAGAAAAGTCATGTCTGTGTGCTTTCGTTTTTCCTT
TGTCTTTTTTTGCCGCGATGCCTAATATGACTTCAATCTGTTGATAGCTT
TTAGGCAAAGTCAGTCAAGATCCGCTTGTTAACCTTCCCCCCCCCCCCCC
CTTGTAATAGACGACGCATGGATTGTCTGAAATGTAAAGCCTCTCTAAAG
GCCATCATGGCGCGGCCGCGGCCTAAAGCTTTGCTCGATGCCTTAGCTGA
CACTGGCATTCAGACCTTGGAAAACGTCCCCGAGTCTAGACGTGCAGCGA
TTGCCGCCTCAACACAACGGCATCAAGGCACAGGACAGCCCGATCGTGAA
GGAGGCATACTAAGAGGGAATACAGGGCCAGGCGACCACGGAGGAAGAGA
AAGAGGGTTGGCAGAGCAGGGTGGAGGTGGCGGGGGTTCGACGTTGAACA
TCAAGTGTATAAATTGTGCGGAGGAGGGATTGGCCATGAAAGCGAGGGCG
TACATGGAAGCACCGCCCATGTCGGTGGTGCTGTGTGCGAACCGTTTGCA
GGATAGACGGGAGATGGAAGAGGCCTTGGTGCACGAGCTCGTTCATGTTT
ACGATGTACGTAAGGGGAACCTTAGGGTGGTGATGAGGGTGAAAGGAAAG
GAGGGAAGGGTTGCATCTTCACGAAAATCTCCTATTCTGTCGAATGCACG
CTTTCTGAAATGTCCTGTTTCAAAGCTGGACGAAACATCTCATACGCCTT
CTCTGTGTTCCCTGTCTTTCTCCCGTCGTCCTTAACCTTACCCTCCCACC
TCCTTCTCCCCATGCAGCACGCCCTCGTTCAAATGGATTTGACTACCTGC
AAGGACCTTGCCTACAGCGAGGTTCGGGCGGCACGGGAGGCAGAGTGCCA
CTACACCCCTCAGTTGTGTTCCTGGTTCAAAAAACAGTGTGTGCAGAGCA
CGGCCACACGCTCTACCGCTACCATTTTCCCCACCGAAGGCGCGGCGTGT
GTGGCGGCGGTGTTTGAAAAGGCGTACCGGGATGTGGGGCCCAAGAAATT
GCACGGGGACTTGGCAATCGGGGCCGGGGAAAGTGGGGGAGGACGGCTTT
TAGGAGGGGTCGCCAAGCCAGCCCCGTCGCCCGCCAGCCGCGCCGCCACG
GCCGCTTCGTTACCTTCTAGAATGTTCCCCGCGTTCCCGGGGTCCTCCTC
TTCCCCCTCCTCCTCCCCCCGCGTGAGCCTCTTTCCTCTTTCCCACGCGC
AGTCCGAAGGGGGCCTGGCCAAGGCCTTGGCGGGTGCCTTCGGCCTGGGA
TCTCCAGGGGCAAAGGAGGGATCGAGGGCGTGA

Coding sequence (CDS) from alignment at KK037248.1:486016..487998-

>rna8362 ID=rna8362|Name=rna8362|organism=Nannochloropsis gaditana|type=CDS|length=3105bp|location=Sequence derived from alignment at KK037248.1:486016..487998- (Nannochloropsis gaditana)
CACGCCCTCGTTCAAATGGATTTGACTACCTGCAAGGACCTTGCCTACAG
CGAGGTTCGGGCGGCACGGGAGGCAGAGTGCCACTACACCCCTCAGTTGT
GTTCCTGGTTCAAAAAACAGTGTGTGCAGAGCACGGCCACACGCTCTACC
GCTACCATTTTCCCCACCGAAGGCGCGGCGTGTGTGGCGGCGGTGTTTGA
AAAGGCGTACCGGGATGTGGGGCCCAAGAAATTGCACGGGGACTTGGCAA
TCGGGGCCGGGGAAAGTGGGGGAGGACGGCTTTTAGGAGGGGTCGCCAAG
CCAGCCCCGTCGCCCGCCAGCCGCGCCGCCACGGCCGCTTCGTTACCTTC
TAGAATGTTCCCCGCGTTCCCGGGGTCCTCCTCTTCCCCCTCCTCCTCCC
CCCGCGTGAGCCTCTTTCCTCTTTCCCACGCGCAGTCCGAAGGGGGCCTG
GCCAAGGCCTTGGCGGGTGCCTTCGGCCTGGGATCTCCAGGGGCAAAGGA
GGGATCGAGGGCGTGAACGACGCATGGATTGTCTGAAATGTAAAGCCTCT
CTAAAGGCCATCATGGCGCGGCCGCGGCCTAAAGCTTTGCTCGATGCCTT
AGCTGACACTGGCATTCAGACCTTGGAAAACGTCCCCGAGTCTAGACGTG
CAGCGATTGCCGCCTCAACACAACGGCATCAAGGCACAGGACAGCCCGAT
CGTGAAGGAGGCATACTAAGAGGGAATACAGGGCCAGGCGACCACGGAGG
AAGAGAAAGAGGGTTGGCAGAGCAGGGTGGAGGTGGCGGGGGTTCGACGT
TGAACATCAAGTGTATAAATTGTGCGGAGGAGGGATTGGCCATGAAAGCG
AGGGCGTACATGGAAGCACCGCCCATGTCGGTGGTGCTGTGTGCGAACCG
TTTGCAGGATAGACGGGAGATGGAAGAGGCCTTGGTGCACGAGCTCGTTC
ATGTTTACGATATGAAGTACCTCTGGGAGGATGGAATTTTACGCGAGAGT
AGACGTGAGACTTTTACCAAAAAAAGGAGTACAATCACGCCCTCGTTCAA
ATGGATTTGACTACCTGCAAGGACCTTGCCTACAGCGAGGTTCGGGCGGC
ACGGGAGGCAGAGTGCCACTACACCCCTCAGTTGTGTTCCTGGTTCAAAA
AACAGTGTGTGCAGAGCACGGCCACACGCTCTACCGCTACCATTTTCCCC
ACCGAAGGCGCGGCGTGTGTGGCGGCGGTGTTTGAAAAGGCGTACCGGGA
TGTGGGGCCCAAGAAATTGCACGGGGACTTGGCAATCGGGGCCGGGGAAA
GTGGGGGAGGACGGCTTTTAGGAGGGGTCGCCAAGCCAGCCCCGTCGCCC
GCCAGCCGCGCCGCCACGGCCGCTTCGTTACCTTCTAGAATGTTCCCCGC
GTTCCCGGGGTCCTCCTCTTCCCCCTCCTCCTCCCCCCGCGTGAGCCTCT
TTCCTCTTTCCCACGCGCAGTCCGAAGGGGGCCTGGCCAAGGCCTTGGCG
GGTGCCTTCGGCCTGGGATCTCCAGGGGCAAAGGAGGGATCGAGGGCGTG
AACGACGCATGGATTGTCTGAAATGTAAAGCCTCTCTAAAGGCCATCATG
GCGCGGCCGCGGCCTAAAGCTTTGCTCGATGCCTTAGCTGACACTGGCAT
TCAGACCTTGGAAAACGTCCCCGAGTCTAGACGTGCAGCGATTGCCGCCT
CAACACAACGGCATCAAGGCACAGGACAGCCCGATCGTGAAGGAGGCATA
CTAAGAGGGAATACAGGGCCAGGCGACCACGGAGGAAGAGAAAGAGGGTT
GGCAGAGCAGGGTGGAGGTGGCGGGGGTTCGACGTTGAACATCAAGTGTA
TAAATTGTGCGGAGGAGGGATTGGCCATGAAAGCGAGGGCGTACATGGAA
GCACCGCCCATGTCGGTGGTGCTGTGTGCGAACCGTTTGCAGGATAGACG
GGAGATGGAAGAGGCCTTGGTGCACGAGCTCGTTCATGTTTACGATATGA
AGTACCTCTGGGAGGATGGAATTTTACGCGAGAGTAGACGTGAGACTTTT
ACCAAAAAAAGGAGTACAATCACGCCCTCGTTCAAATGGATTTGACTACC
TGCAAGGACCTTGCCTACAGCGAGGTTCGGGCGGCACGGGAGGCAGAGTG
CCACTACACCCCTCAGTTGTGTTCCTGGTTCAAAAAACAGTGTGTGCAGA
GCACGGCCACACGCTCTACCGCTACCATTTTCCCCACCGAAGGCGCGGCG
TGTGTGGCGGCGGTGTTTGAAAAGGCGTACCGGGATGTGGGGCCCAAGAA
ATTGCACGGGGACTTGGCAATCGGGGCCGGGGAAAGTGGGGGAGGACGGC
TTTTAGGAGGGGTCGCCAAGCCAGCCCCGTCGCCCGCCAGCCGCGCCGCC
ACGGCCGCTTCGTTACCTTCTAGAATGTTCCCCGCGTTCCCGGGGTCCTC
CTCTTCCCCCTCCTCCTCCCCCCGCGTGAGCCTCTTTCCTCTTTCCCACG
CGCAGTCCGAAGGGGGCCTGGCCAAGGCCTTGGCGGGTGCCTTCGGCCTG
GGATCTCCAGGGGCAAAGGAGGGATCGAGGGCGTGAACGACGCATGGATT
GTCTGAAATGTAAAGCCTCTCTAAAGGCCATCATGGCGCGGCCGCGGCCT
AAAGCTTTGCTCGATGCCTTAGCTGACACTGGCATTCAGACCTTGGAAAA
CGTCCCCGAGTCTAGACGTGCAGCGATTGCCGCCTCAACACAACGGCATC
AAGGCACAGGACAGCCCGATCGTGAAGGAGGCATACTAAGAGGGAATACA
GGGCCAGGCGACCACGGAGGAAGAGAAAGAGGGTTGGCAGAGCAGGGTGG
AGGTGGCGGGGGTTCGACGTTGAACATCAAGTGTATAAATTGTGCGGAGG
AGGGATTGGCCATGAAAGCGAGGGCGTACATGGAAGCACCGCCCATGTCG
GTGGTGCTGTGTGCGAACCGTTTGCAGGATAGACGGGAGATGGAAGAGGC
CTTGGTGCACGAGCTCGTTCATGTTTACGATATGAAGTACCTCTGGGAGG
ATGGAATTTTACGCGAGAGTAGACGTGAGACTTTTACCAAAAAAAGGAGT
ACAAT

Synonyms

Publications