rna836, rna836 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna836
Unique Name	rna836
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1705
Alignment location	CM002456.1:532460..534138 +

Link to JBrowse

Properties


Property Name	Value
Product	sorting and assembly machinery component 50 putative
Orig transcript id	gnl\|cribi\|Naga_100017g27.336.mrna
Orig protein id	gnl\|cribi\|Naga_100017g27.336
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:532460..534138 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100017g27	gene800	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna836	rna836-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29838.1	cds836	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:532460..534138+
coding sequence from alignment at CM002456.1:532460..534138+

mRNA sequence

>rna836 ID=rna836|Name=rna836|organism=Nannochloropsis gaditana|type=mRNA|length=1705bp
AATCCAGTCCACGGAAGCTCCTGCTCCAGCTCCTATCACATGTTGAAAGC
AAGGAGAAACATTAATAAAGGTCGAGTCGTCTCGTGTGGTGCGGATAGTA
GCTGAAAAGGCAGCAAGGAAGCCCCAACGCCAACCTCCCCACCAGTAGCG
TGTTGCCAGTTGGTCAGCCTTTTTAGGACCTTGATGCTAAAATATGAAAA
GCTGAAGACGCATGTCATTTTCCGTAAGAAAATGATCTCCTTCAGAGACG
TTGCTTAAAAAAATCATCAATCTCTTTCCCAATAGAGAAACAGCCAAACT
ACACAAGGGCGACCAGAGCGATCATCTCCAATTGCGCTCTCCCTCGAGGG
ATGTATCCGCAGTTGTCTCCCCATGCCAAGACACTATACGCAAAGTTGAC
GGCATTCGTTGACGAGGAATGCCTTCCTGCGGAGGTGGTGTACGAGAGGC
AGCATGCTGAACTATCTTCTCGCTGGATGATTCCTGAAATAATAGAGACG
CTGAAGGGGAAGGCTCGAAAATTGGGGCTTTGGAACCTTTTCATGATGGA
ACGTGATGTCTATCATTCGGGCTTGAATATGGTAGAGTATGCGGTGCTGA
GCGAAGTTATGGGTAGATCTTTTTTGGCTCCAGAGGCGTGCAATTGCAAC
GCCCCCGATACGGGGAATATGGAAGTCCTTGCAAAGTATGGCAATGCCCG
ACAGCAAGCCCAGTGGCTCAATCCTTTGATGGAGGGAAGCATTCGCTCGA
CTTTCCTTATGACGGAACCTGGCGTGGCTTCCTCAGACGCCACGAATATT
GCCACAAGCTTCCGGCGTGAGGGCGATGAGTACGTGGTGAATGGCCGCAA
GTGGTGGAGCTCGGGCGCCATGGACCCTCGCTGTCAAGTGGCGCTGGTCT
TGGGGAAGGTAGATTCGCCAGTCACCGCAGCTGCACCGCGGCACCGGCAA
CATTCCATCTTGATAGTGCCCATGGCAACGCCAGGAGTGAAAGTATTGCG
AGCTTTGTCCGTTTTCGGCTTCGATGACGCCCCTCACGGGCACGCCGAGG
TCGAGCTCGCAGAGGTACGCGTCCCTGTCAGTAACCTGATCTTGGGAGAA
GGCGATGGATTCAAGATTGCGCAGGGGCGGTTGGGACCCGGGCGCATTCA
TCACTGCATGCGTGCCATCGGACTGTCGGAGCGGGTCCTTGCCTTGGCGA
CCATGCGCGCTCTGACGCGAAGGGCTTTCGGGAAAGAGATAGCGCGACAA
GGTGCCGTGCAACGAGATTTGGCTCAATGCCGGATCAGCGTGGACCAGGC
CCGCTTGCTGGTCCTCCATGCCGCCTGGCGGATGGATACGAACAAGGGGG
CGAAAGGCGCCCAGCAGGAGATCGCGATGATCAAGGTGGTGGCCCCGTCG
GCAGGGCAGCAGGTGGTAGACACAGCAATCCAGATCCACGGGGGAATGGG
GGTGTGCCAGGATACAATCTTGGCGAGGGCGTTCGCCTACATGCGCTCGT
TGCGGATCGCGGACGGTCCTGATGACGTCCACATGAGAACGGTGGCGCGT
TATGAGTTGAAAAAGGCGATGGAGGGAGCAACAGGGCCAGCTGCAGATGC
CTGGTATCGCAGCGGGGGAGAATTTGCGAAAGAGAATGGGCAAAGCAGAC
TCTGATTGTGTACGAAATGTTTAAGACTTTATAAGGAAAAAACTTGCACT
TTCGG

protein sequence of rna836

>rna836-protein ID=rna836-protein|Name=rna836|organism=Nannochloropsis gaditana|type=polypeptide|length=445bp
MVRADTPLRIGRVFVEGNKRTEPSVIEDELQDAYRASTVQGVHRGLQKAN
YNLQNLGIFKGVDIQMQEAASKAPGETDLHIKVIEKGVFSAYTGTSFTRD
DINFEASGSLRNPTGHAETLEGTYSRSRQGNRSLKVNLGKPRVRGLNTRF
DCQIHEDTLNHERTSSLSEKVQAVAFHLTTHNRRHRLSYELALRDILPRR
HLSTPFAYDASLSIMREATPSLKSVFRYKFTDDRQDDSVLPSSGTFFSGL
LELAGVGVGDVAYVKAEVAGAAHKPLGATGLSAHLSGSVGVVRPTGWRAR
EGGVEEAPRTRFSDRYMLGGLQTLRGFGYSGVGPRAPQREGGALKGDSLG
GDFKYVATVALTAPLPLPLLDKFGLRWHVFADAGNLLPWSAPLTSMLSDM
RVACGTGLAISLGMARVEMNYSVPVKKEMKDFEQRWQFGLAAHIG

mRNA from alignment at CM002456.1:532460..534138+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna836 ID=rna836|Name=rna836|organism=Nannochloropsis gaditana|type=mRNA|length=1679bp|location=Sequence derived from alignment at CM002456.1:532460..534138+ (Nannochloropsis gaditana)
ATGGTGCGAGCGGACACGCCCTTACGCATCGGACGCGTCTTCGTTGAAgg
tacggggagggaggcaacgaGAAGCGAGAGTTGACACGTGATGCATTATC
AAATCAGCTTGTTGTGTAAGACTGCTTGAGACGAAATTTAACTTTCCATT
ATACCGTGTAGGAAATAAGCGCACGGAGCCTTCCGTGATCGAGGACGAGC
TACAAGATGCCTATcgggcctccaccgtccAAGGCGTGCATCGGGGTCTC
CAAAAGTACGTTGATGCGGATGAAAGCTACATTTGATGATAGTTTTGATA
TTCAACATAATTTCTCACAGCAAGTTGTTTGAAGATATTTCATGCCTGGG
TCATGTGACTCAAGGCTTTGCTGTAGGGGTACGCGTGCTTGTACAGGTTT
ATCATTGGTCTCGTCCCGGTGTATTTCTCCCCACGAGACATACATGGATT
AAAACCAGCAATAAACTTTATGATTTTCGCACAGAGCAAATTACAACCTC
CAGAATCTTGGGATTTTCAAAGGGGTCGACATCCAGATGCAAGAGGCGGC
CAGCAAGGCGCCAGGGGAGACGGACCTGCACATCAAAGTGATCGAAAAAG
GTGTTTTCTCCGCCTACACGGGAACGAGTTTTACCCGCGACGATATCAAC
TTTGAAGCCTCAGGCTCGCTGCGCAATCCGACTGGCCATGCAGAGACATT
GGAAGGCACGTACTCTCGCTCTCGCCAGGGTAATCGGTCTCTTAAGGTCA
ATCTCGGCAAGCCTCGCGTGCGGGGTTTGAATACGCGCTTTGACTGCCAA
ATTCATGAGGATACGCTCAACCATGAGCGCACCTCTTCTTTAAGCGAGAA
AGTTCAAGCTGTGGCATTTCATCTCACGACGCACAACCGTCGACACCGCC
TCTCGTATGAGCTGGCCTTGAGAGATATACTGCCTCGCCGTCACCTCTCT
ACCCCTTTCGCCTACGATGCCTCTCTCAGCATCATGCGCGAAGCTACTCC
CTCCTTAAAATCTGTTTTCCGTTATAAATTTACGGACGATCGACAGGACG
ATAGCGTGCTCCCATCGAGCGGAACATTCTTCTCTGGGCTTCTGGAGCTA
GCCGGAGTAGGGGTCGGAGACGTCGCTTATGTGAAAGCCGAGGTGGCAGG
CGCGGCGCACAAACCTCTGGGAGCCACAGGTTTAAGTGCACATCTGTCGG
GGTCCGTGGGGGTAGTGCGTCCGACCGGTTGGCGCGcgcgggagggcgga
gtAGAAGAGGCGCCCAGGACACGCTTCAGTGACAGGTACATGCTGGGGGG
CCTTCAGACGCTCAGGGGCTTCGGATACTCGGGAGTTGGGCCGCGGGCAC
ctcagagggagggaggggctttAAAGGGAGACTCTTTGGGCGGCGATTTC
AAGTACGTGGCGACAGTGGCGTTGACGGCCCCTTTGCCGCTACCCCTGTT
GGACAAGTTTGGGTTGCGCTGGCACGTGTTTGCCGATGCAGGCAACCTGC
TGCCCTGGTCGGCGCCTTTGACCAGCATGCTTTCAGATATGCGAGTGGCT
TGTGGGACGGGTTTGGCGATTAGCTTGGGGATGGCACGCGTGGAGATGAA
TTATTCAGTGCccgtcaagaaggagatgaaagaTTTTGAGCAACGGTGGC
AATTTGGGCTAGCCGCTCATATTGGCTAG

Coding sequence (CDS) from alignment at CM002456.1:532460..534138+

>rna836 ID=rna836|Name=rna836|organism=Nannochloropsis gaditana|type=CDS|length=4014bp|location=Sequence derived from alignment at CM002456.1:532460..534138+ (Nannochloropsis gaditana)
ATGGTGCGAGCGGACACGCCCTTACGCATCGGACGCGTCTTCGTTGAAgG
AAATAAGCGCACGGAGCCTTCCGTGATCGAGGACGAGCTACAAGATGCCT
ATcgggcctccaccgtccAAGGCGTGCATCGGGGTCTCCAAAAAGCAAAT
TACAACCTCCAGAATCTTGGGATTTTCAAAGGGGTCGACATCCAGATGCA
AGAGGCGGCCAGCAAGGCGCCAGGGGAGACGGACCTGCACATCAAAGTGA
TCGAAAAAGGTGTTTTCTCCGCCTACACGGGAACGAGTTTTACCCGCGAC
GATATCAACTTTGAAGCCTCAGGCTCGCTGCGCAATCCGACTGGCCATGC
AGAGACATTGGAAGGCACGTACTCTCGCTCTCGCCAGGGTAATCGGTCTC
TTAAGGTCAATCTCGGCAAGCCTCGCGTGCGGGGTTTGAATACGCGCTTT
GACTGCCAAATTCATGAGGATACGCTCAACCATGAGCGCACCTCTTCTTT
AAGCGAGAAAGTTCAAGCTGTGGCATTTCATCTCACGACGCACAACCGTC
GACACCGCCTCTCGTATGAGCTGGCCTTGAGAGATATACTGCCTCGCCGT
CACCTCTCTACCCCTTTCGCCTACGATGCCTCTCTCAGCATCATGCGCGA
AGCTACTCCCTCCTTAAAATCTGTTTTCCGTTATAAATTTACGGACGATC
GACAGGACGATAGCGTGCTCCCATCGAGCGGAACATTCTTCTCTGGGCTT
CTGGAGCTAGCCGGAGTAGGGGTCGGAGACGTCGCTTATGTGAAAGCCGA
GGTGGCAGGCGCGGCGCACAAACCTCTGGGAGCCACAGGTTTAAGTGCAC
ATCTGTCGGGGTCCGTGGGGGTAGTGCGTCCGACCGGTTGGCGCGcgcgg
gagggcggagtAGAAGAGGCGCCCAGGACACGCTTCAGTGACAGGTACAT
GCTGGGGGGCCTTCAGACGCTCAGGGGCTTCGGATACTCGGGAGTTGGGC
CGCGGGCACctcagagggagggaggggctttAAAGGGAGACTCTTTGGGC
GGCGATTTCAAGTACGTGGCGACAGTGGCGTTGACGGCCCCTTTGCCGCT
ACCCCTGTTGGACAAGTTTGGGTTGCGCTGGCACGTGTTTGCCGATGCAG
GCAACCTGCTGCCCTGGTCGGCGCCTTTGACCAGCATGCTTTCAGATATG
CGAGTGGCTTGTGGGACGGGTTTGGCGATTAGCTTGGGGATGGCACGCGT
GGAGATGAATTATTCAGTGCccgtcaagaaggagatgaaagaTTTTGAGC
AACGGTGGCAATTTGGGCTAGCCGCTCATATTGGCTAGATGGTGCGAGCG
GACACGCCCTTACGCATCGGACGCGTCTTCGTTGAAgGAAATAAGCGCAC
GGAGCCTTCCGTGATCGAGGACGAGCTACAAGATGCCTATcgggcctcca
ccgtccAAGGCGTGCATCGGGGTCTCCAAAAAGCAAATTACAACCTCCAG
AATCTTGGGATTTTCAAAGGGGTCGACATCCAGATGCAAGAGGCGGCCAG
CAAGGCGCCAGGGGAGACGGACCTGCACATCAAAGTGATCGAAAAAGGTG
TTTTCTCCGCCTACACGGGAACGAGTTTTACCCGCGACGATATCAACTTT
GAAGCCTCAGGCTCGCTGCGCAATCCGACTGGCCATGCAGAGACATTGGA
AGGCACGTACTCTCGCTCTCGCCAGGGTAATCGGTCTCTTAAGGTCAATC
TCGGCAAGCCTCGCGTGCGGGGTTTGAATACGCGCTTTGACTGCCAAATT
CATGAGGATACGCTCAACCATGAGCGCACCTCTTCTTTAAGCGAGAAAGT
TCAAGCTGTGGCATTTCATCTCACGACGCACAACCGTCGACACCGCCTCT
CGTATGAGCTGGCCTTGAGAGATATACTGCCTCGCCGTCACCTCTCTACC
CCTTTCGCCTACGATGCCTCTCTCAGCATCATGCGCGAAGCTACTCCCTC
CTTAAAATCTGTTTTCCGTTATAAATTTACGGACGATCGACAGGACGATA
GCGTGCTCCCATCGAGCGGAACATTCTTCTCTGGGCTTCTGGAGCTAGCC
GGAGTAGGGGTCGGAGACGTCGCTTATGTGAAAGCCGAGGTGGCAGGCGC
GGCGCACAAACCTCTGGGAGCCACAGGTTTAAGTGCACATCTGTCGGGGT
CCGTGGGGGTAGTGCGTCCGACCGGTTGGCGCGcgcgggagggcggagtA
GAAGAGGCGCCCAGGACACGCTTCAGTGACAGGTACATGCTGGGGGGCCT
TCAGACGCTCAGGGGCTTCGGATACTCGGGAGTTGGGCCGCGGGCACctc
agagggagggaggggctttAAAGGGAGACTCTTTGGGCGGCGATTTCAAG
TACGTGGCGACAGTGGCGTTGACGGCCCCTTTGCCGCTACCCCTGTTGGA
CAAGTTTGGGTTGCGCTGGCACGTGTTTGCCGATGCAGGCAACCTGCTGC
CCTGGTCGGCGCCTTTGACCAGCATGCTTTCAGATATGCGAGTGGCTTGT
GGGACGGGTTTGGCGATTAGCTTGGGGATGGCACGCGTGGAGATGAATTA
TTCAGTGCccgtcaagaaggagatgaaagaTTTTGAGCAACGGTGGCAAT
TTGGGCTAGCCGCTCATATTGGCTAGATGGTGCGAGCGGACACGCCCTTA
CGCATCGGACGCGTCTTCGTTGAAgGAAATAAGCGCACGGAGCCTTCCGT
GATCGAGGACGAGCTACAAGATGCCTATcgggcctccaccgtccAAGGCG
TGCATCGGGGTCTCCAAAAAGCAAATTACAACCTCCAGAATCTTGGGATT
TTCAAAGGGGTCGACATCCAGATGCAAGAGGCGGCCAGCAAGGCGCCAGG
GGAGACGGACCTGCACATCAAAGTGATCGAAAAAGGTGTTTTCTCCGCCT
ACACGGGAACGAGTTTTACCCGCGACGATATCAACTTTGAAGCCTCAGGC
TCGCTGCGCAATCCGACTGGCCATGCAGAGACATTGGAAGGCACGTACTC
TCGCTCTCGCCAGGGTAATCGGTCTCTTAAGGTCAATCTCGGCAAGCCTC
GCGTGCGGGGTTTGAATACGCGCTTTGACTGCCAAATTCATGAGGATACG
CTCAACCATGAGCGCACCTCTTCTTTAAGCGAGAAAGTTCAAGCTGTGGC
ATTTCATCTCACGACGCACAACCGTCGACACCGCCTCTCGTATGAGCTGG
CCTTGAGAGATATACTGCCTCGCCGTCACCTCTCTACCCCTTTCGCCTAC
GATGCCTCTCTCAGCATCATGCGCGAAGCTACTCCCTCCTTAAAATCTGT
TTTCCGTTATAAATTTACGGACGATCGACAGGACGATAGCGTGCTCCCAT
CGAGCGGAACATTCTTCTCTGGGCTTCTGGAGCTAGCCGGAGTAGGGGTC
GGAGACGTCGCTTATGTGAAAGCCGAGGTGGCAGGCGCGGCGCACAAACC
TCTGGGAGCCACAGGTTTAAGTGCACATCTGTCGGGGTCCGTGGGGGTAG
TGCGTCCGACCGGTTGGCGCGcgcgggagggcggagtAGAAGAGGCGCCC
AGGACACGCTTCAGTGACAGGTACATGCTGGGGGGCCTTCAGACGCTCAG
GGGCTTCGGATACTCGGGAGTTGGGCCGCGGGCACctcagagggagggag
gggctttAAAGGGAGACTCTTTGGGCGGCGATTTCAAGTACGTGGCGACA
GTGGCGTTGACGGCCCCTTTGCCGCTACCCCTGTTGGACAAGTTTGGGTT
GCGCTGGCACGTGTTTGCCGATGCAGGCAACCTGCTGCCCTGGTCGGCGC
CTTTGACCAGCATGCTTTCAGATATGCGAGTGGCTTGTGGGACGGGTTTG
GCGATTAGCTTGGGGATGGCACGCGTGGAGATGAATTATTCAGTGCccgt
caagaaggagatgaaagaTTTTGAGCAACGGTGGCAATTTGGGCTAGCCG
CTCATATTGGCTAG

Synonyms

Publications