rna8354, rna8354 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8354
Unique Name	rna8354
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1329
Alignment location	KK037248.1:458101..460223 -

Link to JBrowse

Properties


Property Name	Value
Product	nadh dehydrogenase ubiquinone 1 alpha subcomplex subunit 12
Orig transcript id	gnl\|cribi\|Naga_100230g8.2214.mrna
Orig protein id	gnl\|cribi\|Naga_100230g8.2214
Gene	NDA
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:458101..460223 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NDA	gene8093	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8354	rna8354-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22343.1	cds8327	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:458101..460223-
coding sequence from alignment at KK037248.1:458101..460223-

mRNA sequence

>rna8354 ID=rna8354|Name=rna8354|organism=Nannochloropsis gaditana|type=mRNA|length=1329bp
GGTGTGTGGCGCGAAAGTCTGAAACCTGGAACTGGCAGCACATGCTGCAG
TTTACCCATTTCCCGGAGGAGATGGAGCAGGAGACGATCGTGCAAGAGGG
AGGAAGCAACGTATCAAGCTTGGCGAACCAGGCTCTTGGAAGAACATGGG
ACCCTCTGGGTCATGGGGGAACGCAATGGAGCCGTGGGACTCACACATGC
GTCAGGGAGGTCCCGTCGACGTTCTACAACCCGCCGAGGGGGGGAAAAGC
GGTCGGCGCCTCCCTTGCCCCTCACCTTGAATCTCAACCCCTTGGGAGGA
ATCCTTCGTGCCCTCTCCCCGAGAGACAAGAGCTTGAGGTCAAGAGGACC
TTTTCCTCTCCGTGCACGTCCATGTCGTCGTACTCGGAATTCGACGACCA
GGAAGACGCCGGGGTTTCTTTGGATGGGATTCACCTGCAGGGGGAGGAGC
GACTTACCCGTGGAGCGGGAGCGATGCGCCCGGCGGGTGTCTGGATCATG
GAGGACGTCAGGGATCATGAAGGACTGCCAAGGAGCAACCTGGTGCACGC
GCCTCCCCCCCCGATCCCAATCACTTGGAGTACCTGAAGGTCTCTGGCCC
GCGCTCCACGCTGGCGTGAGTCTCTGGTGTTGTGGAGGAAGGAAATTTGC
TCTTCGTATTTATTGCACAAAATCAAAGTCCACTGCCAAGCGCCGGGTGG
AGGAGTTTCAAAAACCGGTTGGATATGGATTGTGGCAAACTATGCGTGAT
ACGACGTGACCGCCAGGCCAGAAAAATGCGTGCCGTGCGCCTCACATTTA
GAATGATGCATCTTCAGATATATAAAATGCAACTACGAATGAATTACCGA
ATTTCTTCAAATAATTATGATAGCTTGAATAAGCTGACGATAAGAGGAAC
TCAGCATCTAGACCCTGAAATTGGAATGAGAAACTATAGAATCGGCCGCG
ATACTACTAGAGTAGTCGAAGCCGTACATCAGTATCAAACCACTTCTGAG
TGAGGCGCCATGATGCGATAAGTTGTGAAACTACAACCACATACAAGGTT
AGCTTAGTGATTTTAAATACCAAGAAATTAGCGAAGACATTGAATTAAGC
TACGTCATAGCGATCAATAGAAATAAGACAGAACATAAAATAGAATTTTG
TCAAATGCAAAAAAGAGAAGGGAAGAAAAAAACCCGTCGCCGGAATGAAG
ATGACAAATAAATACACGGAGAGGTAAGCAGGCCTGGGGCATCGTCCATG
AATAGTTTCTGTCCCGTCCTCCAACCTCCCCCCACAAAAGATCATCAAGA
CATAGAGAATGAAGACTACTGCTGATGCC

protein sequence of rna8354

>rna8354-protein ID=rna8354-protein|Name=rna8354|organism=Nannochloropsis gaditana|type=polypeptide|length=199bp
MASVVQKYMKALRVYGWRETLYKMYSMGEVKFGDLKGVDVNGNKYFENVE
YPFGQHRWVEYKDIHNYEPSSIPPEWHGWIHHMTDEVPAGKAGVTEPGMK
IAEGQHTPYQVAAGLTDYQMEGQLNWTAHRSRGYGVGSLHQKAGEPDKFW
VQPGHPLAAKKQEKGKGGRFEGLKGYEAWNPSDPEGKKTAQPIRSLDEN

mRNA from alignment at KK037248.1:458101..460223-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8354 ID=rna8354|Name=rna8354|organism=Nannochloropsis gaditana|type=mRNA|length=2123bp|location=Sequence derived from alignment at KK037248.1:458101..460223- (Nannochloropsis gaditana)
CTGCGACAGACCCTTTGGTACACCCGCCGTGGACACGTGAATGCCTGCGA
TCCTAAGTTTTGCCCTGACCTAACTTATTTGTCTCCTCGGTTCACAATGC
GGACAGGGAGGCCTCAGAGCAAGTGTCGCCCTTGCTGCTGGCTTGCTCCC
GGAAGACCTTGTCTGGCTCGTCTCTGCAGCCAGAAAGGACAGGCGAGATA
AAGGGCATTACCCGGTAATTGAGTGGGGGGTGACCTCTATAGAATCGTTG
AACGATAGCGGTGTTGGAGTCGTCATCTGTGCGTGGAAAGATGTCTGGTG
TCGTGGAAGCTTGAGAGACGGCTCAGGATTCAGAGACTTTCATGGAATTA
TCCTGGCTCCTGAGGCGATCCTTTCGGTGCAAGCATGCACAAGTCGCATT
CATATTCCATATCTGGTCTCATTCCCAGGAATTAAAGATGGCATCTGTGG
TGCAAAAATACATGAAGGCCTTGCGCGTGTACGGTTGGCGAGAAACGCTC
TACAAGATGTACTCGGTACGTGATCACCTTCCCGGCCTCCGTCTTATTTC
GTCCTGGATGTACGTGCGTTCACATTTCTCGATACCGCATCAACGTCAGC
ACCAGTTGAATAAAACGAATCGCGCGTCTGTGGAGCGGTCGTGTGCTTTC
TTCAAAGTCAGGTCGTAGGCTCACCGCCCCCCCTGAAACTCTTCCCCTCC
TCTTTCCTTCCTCATCATCCCGTGGCTCTCAGATGGGCGAAGTCAAGTTT
GGGGATTTGAAAGGCGTCGACGTGAATGGGAACAAATATTTTGAAAACGT
CGAGTACCCGTTTGGGCAACATCGCTGGGTGGAATACAAGGTAGGGAGAG
AGAGGGAAAGGCCAGGGCGATGGAGAGAGGAGGCCTGGAACGAGGATGCA
CGTCCCACAGGAGGAGAGGCAAAGGCTGCACGATACCCTCCTGTCTCGTC
GAGCTCACGCGCACGCTCCCCCCTAGGATATCCACAACTACGAGCCATCC
AGCATCCCGCCTGAGTGGCACGGGTGGATCCATCACATGACAGACGAGGT
GCCGGCTGGAAAGGCGGGGGTGACAGAGCCGGGAATGAAGATTGCGGAGG
GCCAACATACCCCCTACCAGGTGAGGAAGGAGGGAGGGAGGGAAAGCGGG
CGGGCGGGAAAATACGGCGGCCTCTGCGCGTGCTTCGGCCTAATTCGGAG
TCTGAGTGAGTGCGTCAAGCCTAACTCAGGCCTTCAACCGCCGCCTCTAT
CTCTCTGTACATTATGTCTGGCAGGTGGCGGCGGGGCTGACGGACTACCA
GATGGAAGGGCAATTGAACTGGACGGCCCACCGCTCGCGTGGCTACGGCG
TGGGCAGCTTGCATCAAAAGGCGGGGGAGCCCGATAAGTTTTGGGTCCAG
CCAGGGCACCCGCTGGCCGCAAAGAAGCAAGAAAAGGGGAAAGGCGGAAG
ATTCGAGGTACGCGCTGGTGGAGAGGGAAATGAGAGGGGTCGATACGGTG
GTGAGGGTTATAGAGTATATTGGGGGACAGTTCGAAAGGGAGAGGGAGGC
GGCGGGCGCGAGTCATGTGTACTGTGTGCAGTGCGAATAGTCCCGGGTAT
GAAAACGAAGGGACTCCTGTCCTGGTGGGAGATTCCGACGAGAGAGCTTC
CGTGGACCATCTAAGAAGGCTATATCCTTCCCTCCTGATCCGAGCCACAT
TTCCCCCTTTTCGAACACTGTTTCGCATCGATGCAGGGTTTGAAAGGTTA
CGAGGCGTGGAACCCCTCGGATCCGGAGGGGAAGAAGACAGCGCAGCCCA
TTCGCTCTCTGGACGAGAACTAGGGTGGAAAAAAAAACGGCGAAAACGGG
AAAAACGGGGCCGGTCTTCCTGAAGGGCAAGACCGTCAGGGATGGACCGA
TAAAAAAGGGTGTATGCACGGTATCGTGTGACAGGGCTGAGAATGGGTAC
GCCAATATGTGACAGATGTGTGTGTGAGTCTCGACCCATATGCGACGTGG
CATGATCGAAGGCAAAAGGAAAAAAATGAAGGATTGCTATGTTGTCGTGT
ACGCCATCTGATAGGCTTTTAGTCTTCCGGATGATTCCATGCCAAAGCCA
ATGCTACACTCTGATTGCATTCC

Coding sequence (CDS) from alignment at KK037248.1:458101..460223-

>rna8354 ID=rna8354|Name=rna8354|organism=Nannochloropsis gaditana|type=CDS|length=3000bp|location=Sequence derived from alignment at KK037248.1:458101..460223- (Nannochloropsis gaditana)
GGTTTGAAAGGTTACGAGGCGTGGAACCCCTCGGATCCGGAGGGGAAGAA
GACAGCGCAGCCCATTCGCTCTCTGGACGAGAACTAGGTGGCGGCGGGGC
TGACGGACTACCAGATGGAAGGGCAATTGAACTGGACGGCCCACCGCTCG
CGTGGCTACGGCGTGGGCAGCTTGCATCAAAAGGCGGGGGAGCCCGATAA
GTTTTGGGTCCAGCCAGGGCACCCGCTGGCCGCAAAGAAGCAAGAAAAGG
GGAAAGGCGGAAGATTCGAGGATATCCACAACTACGAGCCATCCAGCATC
CCGCCTGAGTGGCACGGGTGGATCCATCACATGACAGACGAGGTGCCGGC
TGGAAAGGCGGGGGTGACAGAGCCGGGAATGAAGATTGCGGAGGGCCAAC
ATACCCCCTACCAGATGGGCGAAGTCAAGTTTGGGGATTTGAAAGGCGTC
GACGTGAATGGGAACAAATATTTTGAAAACGTCGAGTACCCGTTTGGGCA
ACATCGCTGGGTGGAATACAAGATGGCATCTGTGGTGCAAAAATACATGA
AGGCCTTGCGCGTGTACGGTTGGCGAGAAACGCTCTACAAGATGTACTCG
GGTTTGAAAGGTTACGAGGCGTGGAACCCCTCGGATCCGGAGGGGAAGAA
GACAGCGCAGCCCATTCGCTCTCTGGACGAGAACTAGGTGGCGGCGGGGC
TGACGGACTACCAGATGGAAGGGCAATTGAACTGGACGGCCCACCGCTCG
CGTGGCTACGGCGTGGGCAGCTTGCATCAAAAGGCGGGGGAGCCCGATAA
GTTTTGGGTCCAGCCAGGGCACCCGCTGGCCGCAAAGAAGCAAGAAAAGG
GGAAAGGCGGAAGATTCGAGGATATCCACAACTACGAGCCATCCAGCATC
CCGCCTGAGTGGCACGGGTGGATCCATCACATGACAGACGAGGTGCCGGC
TGGAAAGGCGGGGGTGACAGAGCCGGGAATGAAGATTGCGGAGGGCCAAC
ATACCCCCTACCAGATGGGCGAAGTCAAGTTTGGGGATTTGAAAGGCGTC
GACGTGAATGGGAACAAATATTTTGAAAACGTCGAGTACCCGTTTGGGCA
ACATCGCTGGGTGGAATACAAGATGGCATCTGTGGTGCAAAAATACATGA
AGGCCTTGCGCGTGTACGGTTGGCGAGAAACGCTCTACAAGATGTACTCG
GGTTTGAAAGGTTACGAGGCGTGGAACCCCTCGGATCCGGAGGGGAAGAA
GACAGCGCAGCCCATTCGCTCTCTGGACGAGAACTAGGTGGCGGCGGGGC
TGACGGACTACCAGATGGAAGGGCAATTGAACTGGACGGCCCACCGCTCG
CGTGGCTACGGCGTGGGCAGCTTGCATCAAAAGGCGGGGGAGCCCGATAA
GTTTTGGGTCCAGCCAGGGCACCCGCTGGCCGCAAAGAAGCAAGAAAAGG
GGAAAGGCGGAAGATTCGAGGATATCCACAACTACGAGCCATCCAGCATC
CCGCCTGAGTGGCACGGGTGGATCCATCACATGACAGACGAGGTGCCGGC
TGGAAAGGCGGGGGTGACAGAGCCGGGAATGAAGATTGCGGAGGGCCAAC
ATACCCCCTACCAGATGGGCGAAGTCAAGTTTGGGGATTTGAAAGGCGTC
GACGTGAATGGGAACAAATATTTTGAAAACGTCGAGTACCCGTTTGGGCA
ACATCGCTGGGTGGAATACAAGATGGCATCTGTGGTGCAAAAATACATGA
AGGCCTTGCGCGTGTACGGTTGGCGAGAAACGCTCTACAAGATGTACTCG
GGTTTGAAAGGTTACGAGGCGTGGAACCCCTCGGATCCGGAGGGGAAGAA
GACAGCGCAGCCCATTCGCTCTCTGGACGAGAACTAGGTGGCGGCGGGGC
TGACGGACTACCAGATGGAAGGGCAATTGAACTGGACGGCCCACCGCTCG
CGTGGCTACGGCGTGGGCAGCTTGCATCAAAAGGCGGGGGAGCCCGATAA
GTTTTGGGTCCAGCCAGGGCACCCGCTGGCCGCAAAGAAGCAAGAAAAGG
GGAAAGGCGGAAGATTCGAGGATATCCACAACTACGAGCCATCCAGCATC
CCGCCTGAGTGGCACGGGTGGATCCATCACATGACAGACGAGGTGCCGGC
TGGAAAGGCGGGGGTGACAGAGCCGGGAATGAAGATTGCGGAGGGCCAAC
ATACCCCCTACCAGATGGGCGAAGTCAAGTTTGGGGATTTGAAAGGCGTC
GACGTGAATGGGAACAAATATTTTGAAAACGTCGAGTACCCGTTTGGGCA
ACATCGCTGGGTGGAATACAAGATGGCATCTGTGGTGCAAAAATACATGA
AGGCCTTGCGCGTGTACGGTTGGCGAGAAACGCTCTACAAGATGTACTCG
GGTTTGAAAGGTTACGAGGCGTGGAACCCCTCGGATCCGGAGGGGAAGAA
GACAGCGCAGCCCATTCGCTCTCTGGACGAGAACTAGGTGGCGGCGGGGC
TGACGGACTACCAGATGGAAGGGCAATTGAACTGGACGGCCCACCGCTCG
CGTGGCTACGGCGTGGGCAGCTTGCATCAAAAGGCGGGGGAGCCCGATAA
GTTTTGGGTCCAGCCAGGGCACCCGCTGGCCGCAAAGAAGCAAGAAAAGG
GGAAAGGCGGAAGATTCGAGGATATCCACAACTACGAGCCATCCAGCATC
CCGCCTGAGTGGCACGGGTGGATCCATCACATGACAGACGAGGTGCCGGC
TGGAAAGGCGGGGGTGACAGAGCCGGGAATGAAGATTGCGGAGGGCCAAC
ATACCCCCTACCAGATGGGCGAAGTCAAGTTTGGGGATTTGAAAGGCGTC
GACGTGAATGGGAACAAATATTTTGAAAACGTCGAGTACCCGTTTGGGCA
ACATCGCTGGGTGGAATACAAGATGGCATCTGTGGTGCAAAAATACATGA
AGGCCTTGCGCGTGTACGGTTGGCGAGAAACGCTCTACAAGATGTACTCG

Synonyms

Publications