EWM22343.1, cds8327 (CDS) Nannochloropsis gaditana

Overview
NameEWM22343.1
Unique Namecds8327
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:459709..459786 -
Alignment locationKK037248.1:459384..459491 -
Alignment locationKK037248.1:459104..459247 -
Alignment locationKK037248.1:458767..458949 -
Alignment locationKK037248.1:458401..458487 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22343.1
Productnadh dehydrogenase ubiquinone 1 alpha subcomplex subunit 12
Orig transcript idgnl|cribi|Naga_100230g8.2214.mrna
GeneNDA
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:459709..459786 -
KK037248.1supercontigKK037248.1:459384..459491 -
KK037248.1supercontigKK037248.1:459104..459247 -
KK037248.1supercontigKK037248.1:458767..458949 -
KK037248.1supercontigKK037248.1:458401..458487 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0008137NADH dehydrogenase (ubiquinone) activity
GO:0009055electron transfer activity
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR007763NDUFA12
Homology
BLAST of EWM22343.1 vs. NCBI_GenBank
Match: gi|585102842|gb|EWM22343.1| (nadh dehydrogenase ubiquinone 1 alpha subcomplex subunit 12 [Nannochloropsis gaditana])

HSP 1 Score: 412.149 bits (1058), Expect = 8.598e-146
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0
Query:    1 MASVVQKYMKALRVYGWRETLYKMYSMGEVKFGDLKGVDVNGNKYFENVEYPFGQHRWVEYKDIHNYEPSSIPPEWHGWIHHMTDEVPAGKAGVTEPGMKIAEGQHTPYQVAAGLTDYQMEGQLNWTAHRSRGYGVGSLHQKAGEPDKFWVQPGHPLAAKKQEKGKGGRFEGLKGYEAWNPSDPEGKKTAQPIRSLDEN 199
            MASVVQKYMKALRVYGWRETLYKMYSMGEVKFGDLKGVDVNGNKYFENVEYPFGQHRWVEYKDIHNYEPSSIPPEWHGWIHHMTDEVPAGKAGVTEPGMKIAEGQHTPYQVAAGLTDYQMEGQLNWTAHRSRGYGVGSLHQKAGEPDKFWVQPGHPLAAKKQEKGKGGRFEGLKGYEAWNPSDPEGKKTAQPIRSLDEN
Sbjct:    1 MASVVQKYMKALRVYGWRETLYKMYSMGEVKFGDLKGVDVNGNKYFENVEYPFGQHRWVEYKDIHNYEPSSIPPEWHGWIHHMTDEVPAGKAGVTEPGMKIAEGQHTPYQVAAGLTDYQMEGQLNWTAHRSRGYGVGSLHQKAGEPDKFWVQPGHPLAAKKQEKGKGGRFEGLKGYEAWNPSDPEGKKTAQPIRSLDEN 199          
BLAST of EWM22343.1 vs. NCBI_GenBank
Match: gi|298706318|emb|CBJ29333.1| (NADH dehydrogenase (ubiquinone) [Ectocarpus siliculosus])

HSP 1 Score: 199.134 bits (505), Expect = 1.452e-61
Identity = 103/201 (51.24%), Postives = 133/201 (66.17%), Query Frame = 0
Query:    1 MASVVQKYMKALRVYGWRETLYKMYSMGEVKFGDLKGVDVNGNKYFENVEYPFGQHRWVEYKDIHNYEPSSIPPEWHGWIHHMTDEVPAGKAGVTE-PGMKIAEGQHTPYQ--VAAGLTDYQMEGQLNWTAHRSRGYGVGSLHQKAGEPDKFWVQPGHPLAAKKQEKGKGGRFEGLKGYEAWNPSDPEGKKTAQPIRSLDE 198
            + SVV KYM+A R +G R  L KMY++G++KFGDLKG D +GNKY+EN +YP+GQHRWVEY DIHNY+ SS+   WH W+HHM+D  P+  A + E   ++IA GQHTP+   VA G  D      +N +  R RG G+G++ Q+ GEPD ++ QPGHP  A      KGGRF   K  E W+P DP+G  T QPIR L E
Sbjct:    2 VVSVVAKYMQAYRQFGLRAALTKMYTVGDIKFGDLKGEDSHGNKYYENKDYPYGQHRWVEYADIHNYDSSSVTASWHPWLHHMSDHTPSAAAELPEMKPIEIAVGQHTPHNDFVAPGRVD-----DVNRSTWRPRGAGMGNIWQEPGEPDMYYKQPGHPQHALSD---KGGRFSKQKSMETWDPKDPKGLNTKQPIRDLTE 194          
BLAST of EWM22343.1 vs. NCBI_GenBank
Match: gi|953490879|emb|CEG46533.1| (nadh dehydrogenase [Plasmopara halstedii])

HSP 1 Score: 123.635 bits (309), Expect = 1.232e-31
Identity = 78/201 (38.81%), Postives = 110/201 (54.73%), Query Frame = 0
Query:    3 SVVQKYMKALRVYGWRETLYKMYSMGEVKFGDLKGVDVNGNKYFENVEYPFGQHRWVEYK--DIHNYEPSSIPPEWHGWIHHMTDEVPAGKAGVTE--PGMKIAEGQHTPYQVAAGLTDYQMEGQLNWTAHRSRGYGVGSLHQKAGEPDKFWVQPGHPLAAKKQEKGKGGRFEGLKGYEAWNPSDPEGKKTAQPIRSLDEN 199
            +V +KY++A + YGW   L+K+Y+ G+VKFG L G D NG KY+E+    +GQHRW EYK       E + IPP WH W+HHMTD VP     + E    ++I +    PY    G +   +    N T +RSRGY VGSL  K  EPD++++QPGH    ++  K K   F  +     +N  +   +  A P+R  D N
Sbjct:   36 TVFEKYLEAKKRYGWEGVLWKLYNPGDVKFGRLVGEDENGFKYYEDPTELYGQHRWTEYKVNSWDEVEGTLIPPPWHLWMHHMTDSVPGEGGQLPENWEKVEIVDKSDAPYINHLGPSGPYVP---NKTLYRSRGYNVGSLAIKPDEPDQYYLQPGH---LRRTRKRKPHFFADVD----YNNPENSDESRADPLRPADVN 226          
BLAST of EWM22343.1 vs. NCBI_GenBank
Match: gi|1173937419|gb|OQR88227.1| (NADH ubiquinone oxidoreductase subunit [Achlya hypogyna])

HSP 1 Score: 122.094 bits (305), Expect = 2.315e-31
Identity = 69/165 (41.82%), Postives = 99/165 (60.00%), Query Frame = 0
Query:    3 SVVQKYMKALRVYGWRETLYKMYSMGEVKFGDLKGVDVNGNKYFENVEYPFGQHRWVEYK-DIHN-YEPSSIPPEWHGWIHHMTDEVP--AGKAGVTEPGMKIAEGQHTPYQVAAGLTDYQMEGQLNWTAHRSRGYGVGSLH-QKAGEPDKFWVQPGHPLAAKKQ 162
            SVV KY++A + YGW+E L+K+Y+ G++KFG   G D  GNKY+E+     GQ RW EYK   H+ +    IPPEWH W+H ++D  P  AG+     P + I+     PY    G T    + Q   T +RSRGYG+ +    KA EP+++++QP HPL A+K+
Sbjct:   13 SVVHKYLEANKRYGWKECLWKLYNPGDIKFGKEVGEDQFGNKYYEDTTELHGQQRWTEYKVKTHDEFGGDQIPPEWHIWMHSLSDAKPGEAGQDPANWPKVPISTTTDAPYTSHVGPTKPFTDNQ---TTYRSRGYGIDNYKWLKANEPERYYMQPNHPLRARKR 174          
BLAST of EWM22343.1 vs. NCBI_GenBank
Match: gi|813184224|ref|XP_012206284.1| (hypothetical protein SPRG_11840 [Saprolegnia parasitica CBS 223.65] >gi|641528789|gb|KDO22993.1| hypothetical protein SPRG_11840 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 120.939 bits (302), Expect = 8.653e-31
Identity = 74/202 (36.63%), Postives = 113/202 (55.94%), Query Frame = 0
Query:    3 SVVQKYMKALRVYGWRETLYKMYSMGEVKFGDLKGVDVNGNKYFENVEYPFGQHRWVEYK-DIHN-YEPSSIPPEWHGWIHHMTDEVP--AGKAGVTEPGMKIAEGQHTPYQVAAGLTDYQMEGQLNWTAHRSRGYGVGSLH-QKAGEPDKFWVQPGHPLAAKKQEKGKGGRFEGLKGYEAWNPSDPEGKKTAQPIRSLDEN 199
            SVV KY++A + YGW+E L+K+Y+ G++KFG   G D  GNKY+E+     GQ RW EYK   H+ +    IPPEWH W+H ++D  P  AG+       + I+   + PY    G T    + Q   T +RSRGYG+ +    KA EP+++++QP HPL A+K+        +       +N  D   + +++P+  LD+N
Sbjct:   14 SVVHKYLEANKRYGWKECLWKLYNPGDIKFGKEVGEDQFGNKYYEDTTELHGQQRWTEYKVKTHDEFGGDQIPPEWHIWMHSLSDAKPGEAGQNPENWSKVPISTVSNAPYTSHVGPTKPFTDNQ---TTYRSRGYGIDNYKWLKANEPERYYMQPNHPLRARKRPATIYDEID-------YNNPDAAPEHSSEPLMKLDKN 205          
BLAST of EWM22343.1 vs. NCBI_GenBank
Match: gi|669145574|ref|XP_008608349.1| (hypothetical protein SDRG_04452 [Saprolegnia diclina VS20] >gi|530739780|gb|EQC38022.1| hypothetical protein SDRG_04452 [Saprolegnia diclina VS20])

HSP 1 Score: 120.553 bits (301), Expect = 1.145e-30
Identity = 73/202 (36.14%), Postives = 113/202 (55.94%), Query Frame = 0
Query:    3 SVVQKYMKALRVYGWRETLYKMYSMGEVKFGDLKGVDVNGNKYFENVEYPFGQHRWVEYK-DIHN-YEPSSIPPEWHGWIHHMTDEVP--AGKAGVTEPGMKIAEGQHTPYQVAAGLTDYQMEGQLNWTAHRSRGYGVGSLH-QKAGEPDKFWVQPGHPLAAKKQEKGKGGRFEGLKGYEAWNPSDPEGKKTAQPIRSLDEN 199
            SVV KY++A + YGW+E L+K+Y+ G++KFG   G D  GNKY+E+     GQ RW EYK   H+ +    IPPEWH W+H ++D  P  AG+       + I+   + PY    G T    + Q   T +RSRGYG+ +    KA EP+++++QP HPL ++K+        +       +N  D   + +++P+  LD+N
Sbjct:   14 SVVHKYLEANKRYGWKECLWKLYNPGDIKFGKEVGEDQFGNKYYEDTTELHGQQRWTEYKVKTHDEFGGDQIPPEWHIWMHSLSDAKPGEAGQNPENWSNVPISTVSNAPYTSHVGPTTPFTDNQ---TTYRSRGYGIDNYKWLKANEPERYYMQPNHPLRSRKRPATIYDEID-------YNNPDAAPEHSSEPLMKLDKN 205          
BLAST of EWM22343.1 vs. NCBI_GenBank
Match: gi|1173955449|gb|OQS02411.1| (NADH ubiquinone oxidoreductase subunit [Thraustotheca clavata])

HSP 1 Score: 120.168 bits (300), Expect = 1.668e-30
Identity = 77/203 (37.93%), Postives = 112/203 (55.17%), Query Frame = 0
Query:    3 SVVQKYMKALRVYGWRETLYKMYSMGEVKFGDLKGVDVNGNKYFENVEYPFGQHRWVEYK-DIHN-YEPSSIPPEWHGWIHHMTDEVP--AGKAGVTEPGMKIAEGQHTPYQVAAGLTDYQMEGQLNWTAHRSRGYGVGSLHQ--KAGEPDKFWVQPGHPLAAKKQEKGKGGRFEGLKGYEAWNPSDPEGKKTAQPIRSLDEN 199
            SVV KY++A + YGW+E L+K+Y+ G++KFG   G D  GNKY+E+     GQ RW EYK   H+ +    IPPEWH W+H  +D  P  AG+   T   + I+   H PY    G T    E   N T  R RGYG+ + H+  KAGEP+K+++QP HPL  +++        +       +N  D     +++P+  LD+N
Sbjct:   14 SVVHKYLEANKRYGWKECLWKLYNPGDIKFGKEVGTDQFGNKYYEDTTDLHGQQRWTEYKVKTHDEFSADQIPPEWHLWMHSFSDAKPGEAGQNPETWAKVPISTVSHAPYGNHVGPTTPFTE---NPTTLRRRGYGIDN-HKWLKAGEPEKYYMQPNHPLRQRQRPATIHDEID-------YNNPDAPPAHSSEPLVGLDKN 205          
BLAST of EWM22343.1 vs. NCBI_GenBank
Match: gi|695457682|ref|XP_009537254.1| (hypothetical protein PHYSODRAFT_356051 [Phytophthora sojae] >gi|348667863|gb|EGZ07688.1| hypothetical protein PHYSODRAFT_356051 [Phytophthora sojae])

HSP 1 Score: 119.013 bits (297), Expect = 6.990e-30
Identity = 68/175 (38.86%), Postives = 98/175 (56.00%), Query Frame = 0
Query:    3 SVVQKYMKALRVYGWRETLYKMYSMGEVKFGDLKGVDVNGNKYFENVEYPFGQHRWVEYK--DIHNYEPSSIPPEWHGWIHHMTDEVPAGKAGVTEPGMKIAE-------------GQHTPYQVAAGLTDYQMEGQLNWTAHRSRGYGVGSLHQKAGEPDKFWVQPGHPLAAKKQ 162
            ++ +KYM+A + YGW+ TL+K+Y+ G+VKFG   G D NG KY+E+    +GQHRW EYK       E + IPP+WH W+HH+TD +P G+ G      +  E             G+H PY               N T +RSRGY +GSL     EPD++++QPGH   ++K+
Sbjct:   40 TIFEKYMEANKRYGWKGTLWKLYNPGDVKFGRFVGEDENGFKYYEDPTELYGQHRWTEYKVDSWEEVEGTLIPPQWHLWMHHLTDSLP-GQGGQDPANWEKKETVAHSDAPYVNHLGEHVPYYP-------------NKTLYRSRGYNIGSLATDVDEPDQYYLQPGHLRRSRKR 200          
BLAST of EWM22343.1 vs. NCBI_GenBank
Match: gi|1214711931|gb|OWZ22906.1| (NADH ubiquinone oxidoreductase subunit [Phytophthora megakarya])

HSP 1 Score: 118.627 bits (296), Expect = 1.066e-29
Identity = 68/166 (40.96%), Postives = 102/166 (61.45%), Query Frame = 0
Query:    3 SVVQKYMKALRVYGWRETLYKMYSMGEVKFGDLKGVDVNGNKYFENVEYPFGQHRWVEYK--DIHNYEPSSIPPEWHGWIHHMTDEVPAGKAGVTEPGM--KIAEGQHTPYQVAAGLTDYQMEGQLNWTAHRSRGYGVGSLHQKAGEPDKFWVQPGHPLAAKKQEK 164
            +V +KY++A + YGW+ TL+K+Y+ G+VKFG L G D NG K++E+    +GQHRW EYK       E + + P+WH W+HH+TD +P    G  +P    K+   +H+    A  L +  +    N T +RSRGY VGSL  KA EPD++++QPGH    +K ++
Sbjct:   32 TVFEKYLEANKRYGWKGTLWKLYNPGDVKFGRLVGEDENGFKFYEDPTEVYGQHRWTEYKVDSWDEVEGTLLSPQWHLWMHHLTDSLPG--EGGQDPANWEKVNTVKHSDAPYANHLGE-NVPYYPNKTLYRSRGYNVGSLAIKADEPDQYYLQPGHLRRTRKHKQ 194          
BLAST of EWM22343.1 vs. NCBI_GenBank
Match: gi|675183567|ref|XP_008900668.1| (hypothetical protein PPTG_08347 [Phytophthora parasitica INRA-310] >gi|566030679|gb|ETI53590.1| hypothetical protein F443_03502 [Phytophthora parasitica P1569] >gi|567968311|gb|ETK93454.1| hypothetical protein L915_03389 [Phytophthora parasitica] >gi|567996768|gb|ETL46870.1| hypothetical protein L916_03325 [Phytophthora parasitica] >gi|568026001|gb|ETM00003.1| hypothetical protein L917_03265 [Phytophthora parasitica] >gi|568056453|gb|ETM53165.1| hypothetical protein L914_03365 [Phytophthora parasitica] >gi|568098867|gb|ETN13585.1| hypothetical protein PPTG_08347 [Phytophthora parasitica INRA-310] >gi|570334346|gb|ETO82294.1| hypothetical protein F444_03556 [Phytophthora parasitica P1976] >gi|570958410|gb|ETP23389.1| hypothetical protein F441_03480 [Phytophthora parasitica CJ01A1] >gi|570994199|gb|ETP51387.1| hypothetical protein F442_03484 [Phytophthora parasitica P10297] >gi|970628962|gb|KUF76378.1| NADH dehydrogenase 1 alpha subcomplex subunit 12 [Phytophthora nicotianae] >gi|970656072|gb|KUF94133.1| Cyst germination specific acidic repeat protein [Phytophthora nicotianae] >gi|970656338|gb|KUF94362.1| NADH dehydrogenase 1 alpha subcomplex subunit 12 [Phytophthora nicotianae])

HSP 1 Score: 116.701 bits (291), Expect = 5.172e-29
Identity = 66/163 (40.49%), Postives = 95/163 (58.28%), Query Frame = 0
Query:    3 SVVQKYMKALRVYGWRETLYKMYSMGEVKFGDLKGVDVNGNKYFENVEYPFGQHRWVEYK--DIHNYEPSSIPPEWHGWIHHMTDEVPAGKAGVTEPGMKIAEGQHTPYQVAAGLTDYQMEGQLNWTAHRSRGYGVGSLHQKAGEPDKFWVQPGHPLAAKKQE 163
            +V +KY++A + YGW+ TL+K+Y+ G+VKFG   G D NG KY+E+    +GQHRW EYK       E + I P+WH W+HH+TD +P     + E   K     H+       L    +    N T +RSRGY VGSL   A EPD++++QPGH    +K++
Sbjct:   36 TVFEKYLEANKRYGWKGTLWKLYNPGDVKFGRFVGEDENGFKYYEDPTEVYGQHRWTEYKVDSWDEVEGTLISPQWHLWMHHVTDSIPGEGGQLPENWEKRETVAHSDAPFVNHLGK-NVPYYPNKTLYRSRGYNVGSLAINADEPDQYYLQPGHLRRTRKRK 197          
The following BLAST results are available for this feature:
BLAST of EWM22343.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102842|gb|EWM22343.1|8.598e-146100.00nadh dehydrogenase ubiquinone 1 alpha subcomplex s... [more]
gi|298706318|emb|CBJ29333.1|1.452e-6151.24NADH dehydrogenase (ubiquinone) [Ectocarpus silicu... [more]
gi|953490879|emb|CEG46533.1|1.232e-3138.81nadh dehydrogenase [Plasmopara halstedii][more]
gi|1173937419|gb|OQR88227.1|2.315e-3141.82NADH ubiquinone oxidoreductase subunit [Achlya hyp... [more]
gi|813184224|ref|XP_012206284.1|8.653e-3136.63hypothetical protein SPRG_11840 [Saprolegnia paras... [more]
gi|669145574|ref|XP_008608349.1|1.145e-3036.14hypothetical protein SDRG_04452 [Saprolegnia dicli... [more]
gi|1173955449|gb|OQS02411.1|1.668e-3037.93NADH ubiquinone oxidoreductase subunit [Thraustoth... [more]
gi|695457682|ref|XP_009537254.1|6.990e-3038.86hypothetical protein PHYSODRAFT_356051 [Phytophtho... [more]
gi|1214711931|gb|OWZ22906.1|1.066e-2940.96NADH ubiquinone oxidoreductase subunit [Phytophtho... [more]
gi|675183567|ref|XP_008900668.1|5.172e-2940.49hypothetical protein PPTG_08347 [Phytophthora para... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8354rna8354Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications