EWM22343.1, cds8327 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22343.1 vs. NCBI_GenBank
Match: gi|585102842|gb|EWM22343.1| (nadh dehydrogenase ubiquinone 1 alpha subcomplex subunit 12 [Nannochloropsis gaditana]) HSP 1 Score: 412.149 bits (1058), Expect = 8.598e-146 Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0 Query: 1 MASVVQKYMKALRVYGWRETLYKMYSMGEVKFGDLKGVDVNGNKYFENVEYPFGQHRWVEYKDIHNYEPSSIPPEWHGWIHHMTDEVPAGKAGVTEPGMKIAEGQHTPYQVAAGLTDYQMEGQLNWTAHRSRGYGVGSLHQKAGEPDKFWVQPGHPLAAKKQEKGKGGRFEGLKGYEAWNPSDPEGKKTAQPIRSLDEN 199 MASVVQKYMKALRVYGWRETLYKMYSMGEVKFGDLKGVDVNGNKYFENVEYPFGQHRWVEYKDIHNYEPSSIPPEWHGWIHHMTDEVPAGKAGVTEPGMKIAEGQHTPYQVAAGLTDYQMEGQLNWTAHRSRGYGVGSLHQKAGEPDKFWVQPGHPLAAKKQEKGKGGRFEGLKGYEAWNPSDPEGKKTAQPIRSLDEN Sbjct: 1 MASVVQKYMKALRVYGWRETLYKMYSMGEVKFGDLKGVDVNGNKYFENVEYPFGQHRWVEYKDIHNYEPSSIPPEWHGWIHHMTDEVPAGKAGVTEPGMKIAEGQHTPYQVAAGLTDYQMEGQLNWTAHRSRGYGVGSLHQKAGEPDKFWVQPGHPLAAKKQEKGKGGRFEGLKGYEAWNPSDPEGKKTAQPIRSLDEN 199
BLAST of EWM22343.1 vs. NCBI_GenBank
Match: gi|298706318|emb|CBJ29333.1| (NADH dehydrogenase (ubiquinone) [Ectocarpus siliculosus]) HSP 1 Score: 199.134 bits (505), Expect = 1.452e-61 Identity = 103/201 (51.24%), Postives = 133/201 (66.17%), Query Frame = 0 Query: 1 MASVVQKYMKALRVYGWRETLYKMYSMGEVKFGDLKGVDVNGNKYFENVEYPFGQHRWVEYKDIHNYEPSSIPPEWHGWIHHMTDEVPAGKAGVTE-PGMKIAEGQHTPYQ--VAAGLTDYQMEGQLNWTAHRSRGYGVGSLHQKAGEPDKFWVQPGHPLAAKKQEKGKGGRFEGLKGYEAWNPSDPEGKKTAQPIRSLDE 198 + SVV KYM+A R +G R L KMY++G++KFGDLKG D +GNKY+EN +YP+GQHRWVEY DIHNY+ SS+ WH W+HHM+D P+ A + E ++IA GQHTP+ VA G D +N + R RG G+G++ Q+ GEPD ++ QPGHP A KGGRF K E W+P DP+G T QPIR L E Sbjct: 2 VVSVVAKYMQAYRQFGLRAALTKMYTVGDIKFGDLKGEDSHGNKYYENKDYPYGQHRWVEYADIHNYDSSSVTASWHPWLHHMSDHTPSAAAELPEMKPIEIAVGQHTPHNDFVAPGRVD-----DVNRSTWRPRGAGMGNIWQEPGEPDMYYKQPGHPQHALSD---KGGRFSKQKSMETWDPKDPKGLNTKQPIRDLTE 194
BLAST of EWM22343.1 vs. NCBI_GenBank
Match: gi|953490879|emb|CEG46533.1| (nadh dehydrogenase [Plasmopara halstedii]) HSP 1 Score: 123.635 bits (309), Expect = 1.232e-31 Identity = 78/201 (38.81%), Postives = 110/201 (54.73%), Query Frame = 0 Query: 3 SVVQKYMKALRVYGWRETLYKMYSMGEVKFGDLKGVDVNGNKYFENVEYPFGQHRWVEYK--DIHNYEPSSIPPEWHGWIHHMTDEVPAGKAGVTE--PGMKIAEGQHTPYQVAAGLTDYQMEGQLNWTAHRSRGYGVGSLHQKAGEPDKFWVQPGHPLAAKKQEKGKGGRFEGLKGYEAWNPSDPEGKKTAQPIRSLDEN 199 +V +KY++A + YGW L+K+Y+ G+VKFG L G D NG KY+E+ +GQHRW EYK E + IPP WH W+HHMTD VP + E ++I + PY G + + N T +RSRGY VGSL K EPD++++QPGH ++ K K F + +N + + A P+R D N Sbjct: 36 TVFEKYLEAKKRYGWEGVLWKLYNPGDVKFGRLVGEDENGFKYYEDPTELYGQHRWTEYKVNSWDEVEGTLIPPPWHLWMHHMTDSVPGEGGQLPENWEKVEIVDKSDAPYINHLGPSGPYVP---NKTLYRSRGYNVGSLAIKPDEPDQYYLQPGH---LRRTRKRKPHFFADVD----YNNPENSDESRADPLRPADVN 226
BLAST of EWM22343.1 vs. NCBI_GenBank
Match: gi|1173937419|gb|OQR88227.1| (NADH ubiquinone oxidoreductase subunit [Achlya hypogyna]) HSP 1 Score: 122.094 bits (305), Expect = 2.315e-31 Identity = 69/165 (41.82%), Postives = 99/165 (60.00%), Query Frame = 0 Query: 3 SVVQKYMKALRVYGWRETLYKMYSMGEVKFGDLKGVDVNGNKYFENVEYPFGQHRWVEYK-DIHN-YEPSSIPPEWHGWIHHMTDEVP--AGKAGVTEPGMKIAEGQHTPYQVAAGLTDYQMEGQLNWTAHRSRGYGVGSLH-QKAGEPDKFWVQPGHPLAAKKQ 162 SVV KY++A + YGW+E L+K+Y+ G++KFG G D GNKY+E+ GQ RW EYK H+ + IPPEWH W+H ++D P AG+ P + I+ PY G T + Q T +RSRGYG+ + KA EP+++++QP HPL A+K+ Sbjct: 13 SVVHKYLEANKRYGWKECLWKLYNPGDIKFGKEVGEDQFGNKYYEDTTELHGQQRWTEYKVKTHDEFGGDQIPPEWHIWMHSLSDAKPGEAGQDPANWPKVPISTTTDAPYTSHVGPTKPFTDNQ---TTYRSRGYGIDNYKWLKANEPERYYMQPNHPLRARKR 174
BLAST of EWM22343.1 vs. NCBI_GenBank
Match: gi|813184224|ref|XP_012206284.1| (hypothetical protein SPRG_11840 [Saprolegnia parasitica CBS 223.65] >gi|641528789|gb|KDO22993.1| hypothetical protein SPRG_11840 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 120.939 bits (302), Expect = 8.653e-31 Identity = 74/202 (36.63%), Postives = 113/202 (55.94%), Query Frame = 0 Query: 3 SVVQKYMKALRVYGWRETLYKMYSMGEVKFGDLKGVDVNGNKYFENVEYPFGQHRWVEYK-DIHN-YEPSSIPPEWHGWIHHMTDEVP--AGKAGVTEPGMKIAEGQHTPYQVAAGLTDYQMEGQLNWTAHRSRGYGVGSLH-QKAGEPDKFWVQPGHPLAAKKQEKGKGGRFEGLKGYEAWNPSDPEGKKTAQPIRSLDEN 199 SVV KY++A + YGW+E L+K+Y+ G++KFG G D GNKY+E+ GQ RW EYK H+ + IPPEWH W+H ++D P AG+ + I+ + PY G T + Q T +RSRGYG+ + KA EP+++++QP HPL A+K+ + +N D + +++P+ LD+N Sbjct: 14 SVVHKYLEANKRYGWKECLWKLYNPGDIKFGKEVGEDQFGNKYYEDTTELHGQQRWTEYKVKTHDEFGGDQIPPEWHIWMHSLSDAKPGEAGQNPENWSKVPISTVSNAPYTSHVGPTKPFTDNQ---TTYRSRGYGIDNYKWLKANEPERYYMQPNHPLRARKRPATIYDEID-------YNNPDAAPEHSSEPLMKLDKN 205
BLAST of EWM22343.1 vs. NCBI_GenBank
Match: gi|669145574|ref|XP_008608349.1| (hypothetical protein SDRG_04452 [Saprolegnia diclina VS20] >gi|530739780|gb|EQC38022.1| hypothetical protein SDRG_04452 [Saprolegnia diclina VS20]) HSP 1 Score: 120.553 bits (301), Expect = 1.145e-30 Identity = 73/202 (36.14%), Postives = 113/202 (55.94%), Query Frame = 0 Query: 3 SVVQKYMKALRVYGWRETLYKMYSMGEVKFGDLKGVDVNGNKYFENVEYPFGQHRWVEYK-DIHN-YEPSSIPPEWHGWIHHMTDEVP--AGKAGVTEPGMKIAEGQHTPYQVAAGLTDYQMEGQLNWTAHRSRGYGVGSLH-QKAGEPDKFWVQPGHPLAAKKQEKGKGGRFEGLKGYEAWNPSDPEGKKTAQPIRSLDEN 199 SVV KY++A + YGW+E L+K+Y+ G++KFG G D GNKY+E+ GQ RW EYK H+ + IPPEWH W+H ++D P AG+ + I+ + PY G T + Q T +RSRGYG+ + KA EP+++++QP HPL ++K+ + +N D + +++P+ LD+N Sbjct: 14 SVVHKYLEANKRYGWKECLWKLYNPGDIKFGKEVGEDQFGNKYYEDTTELHGQQRWTEYKVKTHDEFGGDQIPPEWHIWMHSLSDAKPGEAGQNPENWSNVPISTVSNAPYTSHVGPTTPFTDNQ---TTYRSRGYGIDNYKWLKANEPERYYMQPNHPLRSRKRPATIYDEID-------YNNPDAAPEHSSEPLMKLDKN 205
BLAST of EWM22343.1 vs. NCBI_GenBank
Match: gi|1173955449|gb|OQS02411.1| (NADH ubiquinone oxidoreductase subunit [Thraustotheca clavata]) HSP 1 Score: 120.168 bits (300), Expect = 1.668e-30 Identity = 77/203 (37.93%), Postives = 112/203 (55.17%), Query Frame = 0 Query: 3 SVVQKYMKALRVYGWRETLYKMYSMGEVKFGDLKGVDVNGNKYFENVEYPFGQHRWVEYK-DIHN-YEPSSIPPEWHGWIHHMTDEVP--AGKAGVTEPGMKIAEGQHTPYQVAAGLTDYQMEGQLNWTAHRSRGYGVGSLHQ--KAGEPDKFWVQPGHPLAAKKQEKGKGGRFEGLKGYEAWNPSDPEGKKTAQPIRSLDEN 199 SVV KY++A + YGW+E L+K+Y+ G++KFG G D GNKY+E+ GQ RW EYK H+ + IPPEWH W+H +D P AG+ T + I+ H PY G T E N T R RGYG+ + H+ KAGEP+K+++QP HPL +++ + +N D +++P+ LD+N Sbjct: 14 SVVHKYLEANKRYGWKECLWKLYNPGDIKFGKEVGTDQFGNKYYEDTTDLHGQQRWTEYKVKTHDEFSADQIPPEWHLWMHSFSDAKPGEAGQNPETWAKVPISTVSHAPYGNHVGPTTPFTE---NPTTLRRRGYGIDN-HKWLKAGEPEKYYMQPNHPLRQRQRPATIHDEID-------YNNPDAPPAHSSEPLVGLDKN 205
BLAST of EWM22343.1 vs. NCBI_GenBank
Match: gi|695457682|ref|XP_009537254.1| (hypothetical protein PHYSODRAFT_356051 [Phytophthora sojae] >gi|348667863|gb|EGZ07688.1| hypothetical protein PHYSODRAFT_356051 [Phytophthora sojae]) HSP 1 Score: 119.013 bits (297), Expect = 6.990e-30 Identity = 68/175 (38.86%), Postives = 98/175 (56.00%), Query Frame = 0 Query: 3 SVVQKYMKALRVYGWRETLYKMYSMGEVKFGDLKGVDVNGNKYFENVEYPFGQHRWVEYK--DIHNYEPSSIPPEWHGWIHHMTDEVPAGKAGVTEPGMKIAE-------------GQHTPYQVAAGLTDYQMEGQLNWTAHRSRGYGVGSLHQKAGEPDKFWVQPGHPLAAKKQ 162 ++ +KYM+A + YGW+ TL+K+Y+ G+VKFG G D NG KY+E+ +GQHRW EYK E + IPP+WH W+HH+TD +P G+ G + E G+H PY N T +RSRGY +GSL EPD++++QPGH ++K+ Sbjct: 40 TIFEKYMEANKRYGWKGTLWKLYNPGDVKFGRFVGEDENGFKYYEDPTELYGQHRWTEYKVDSWEEVEGTLIPPQWHLWMHHLTDSLP-GQGGQDPANWEKKETVAHSDAPYVNHLGEHVPYYP-------------NKTLYRSRGYNIGSLATDVDEPDQYYLQPGHLRRSRKR 200
BLAST of EWM22343.1 vs. NCBI_GenBank
Match: gi|1214711931|gb|OWZ22906.1| (NADH ubiquinone oxidoreductase subunit [Phytophthora megakarya]) HSP 1 Score: 118.627 bits (296), Expect = 1.066e-29 Identity = 68/166 (40.96%), Postives = 102/166 (61.45%), Query Frame = 0 Query: 3 SVVQKYMKALRVYGWRETLYKMYSMGEVKFGDLKGVDVNGNKYFENVEYPFGQHRWVEYK--DIHNYEPSSIPPEWHGWIHHMTDEVPAGKAGVTEPGM--KIAEGQHTPYQVAAGLTDYQMEGQLNWTAHRSRGYGVGSLHQKAGEPDKFWVQPGHPLAAKKQEK 164 +V +KY++A + YGW+ TL+K+Y+ G+VKFG L G D NG K++E+ +GQHRW EYK E + + P+WH W+HH+TD +P G +P K+ +H+ A L + + N T +RSRGY VGSL KA EPD++++QPGH +K ++ Sbjct: 32 TVFEKYLEANKRYGWKGTLWKLYNPGDVKFGRLVGEDENGFKFYEDPTEVYGQHRWTEYKVDSWDEVEGTLLSPQWHLWMHHLTDSLPG--EGGQDPANWEKVNTVKHSDAPYANHLGE-NVPYYPNKTLYRSRGYNVGSLAIKADEPDQYYLQPGHLRRTRKHKQ 194
BLAST of EWM22343.1 vs. NCBI_GenBank
Match: gi|675183567|ref|XP_008900668.1| (hypothetical protein PPTG_08347 [Phytophthora parasitica INRA-310] >gi|566030679|gb|ETI53590.1| hypothetical protein F443_03502 [Phytophthora parasitica P1569] >gi|567968311|gb|ETK93454.1| hypothetical protein L915_03389 [Phytophthora parasitica] >gi|567996768|gb|ETL46870.1| hypothetical protein L916_03325 [Phytophthora parasitica] >gi|568026001|gb|ETM00003.1| hypothetical protein L917_03265 [Phytophthora parasitica] >gi|568056453|gb|ETM53165.1| hypothetical protein L914_03365 [Phytophthora parasitica] >gi|568098867|gb|ETN13585.1| hypothetical protein PPTG_08347 [Phytophthora parasitica INRA-310] >gi|570334346|gb|ETO82294.1| hypothetical protein F444_03556 [Phytophthora parasitica P1976] >gi|570958410|gb|ETP23389.1| hypothetical protein F441_03480 [Phytophthora parasitica CJ01A1] >gi|570994199|gb|ETP51387.1| hypothetical protein F442_03484 [Phytophthora parasitica P10297] >gi|970628962|gb|KUF76378.1| NADH dehydrogenase 1 alpha subcomplex subunit 12 [Phytophthora nicotianae] >gi|970656072|gb|KUF94133.1| Cyst germination specific acidic repeat protein [Phytophthora nicotianae] >gi|970656338|gb|KUF94362.1| NADH dehydrogenase 1 alpha subcomplex subunit 12 [Phytophthora nicotianae]) HSP 1 Score: 116.701 bits (291), Expect = 5.172e-29 Identity = 66/163 (40.49%), Postives = 95/163 (58.28%), Query Frame = 0 Query: 3 SVVQKYMKALRVYGWRETLYKMYSMGEVKFGDLKGVDVNGNKYFENVEYPFGQHRWVEYK--DIHNYEPSSIPPEWHGWIHHMTDEVPAGKAGVTEPGMKIAEGQHTPYQVAAGLTDYQMEGQLNWTAHRSRGYGVGSLHQKAGEPDKFWVQPGHPLAAKKQE 163 +V +KY++A + YGW+ TL+K+Y+ G+VKFG G D NG KY+E+ +GQHRW EYK E + I P+WH W+HH+TD +P + E K H+ L + N T +RSRGY VGSL A EPD++++QPGH +K++ Sbjct: 36 TVFEKYLEANKRYGWKGTLWKLYNPGDVKFGRFVGEDENGFKYYEDPTEVYGQHRWTEYKVDSWDEVEGTLISPQWHLWMHHVTDSIPGEGGQLPENWEKRETVAHSDAPFVNHLGK-NVPYYPNKTLYRSRGYNVGSLAINADEPDQYYLQPGHLRRTRKRK 197 The following BLAST results are available for this feature:
BLAST of EWM22343.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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