rna835, rna835 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna835
Unique Name	rna835
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3381
Alignment location	CM002456.1:530744..532448 -

Link to JBrowse

Properties


Property Name	Value
Product	acyl- dehydrogenase
Orig transcript id	gnl\|cribi\|Naga_100017g26.304.mrna
Orig protein id	gnl\|cribi\|Naga_100017g26.304
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:530744..532448 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100017g26	gene799	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29806.1	cds835	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna835	rna835-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:530744..532448-
coding sequence from alignment at CM002456.1:530744..532448-

mRNA sequence

>rna835 ID=rna835|Name=rna835|organism=Nannochloropsis gaditana|type=mRNA|length=3381bp
GCATGTGGTAATCGGGAGAAAGGCTCTTTGGGGGGAATGGACGGACTGAA
TGACTCACGCGCTTTGAATTTTGGGGCATTATCAATAGGGATTTGAAAAG
AGTATCGCAGCCTGGTGTTTCCGGCGTCATGGCGCGCTATTGTCTTGCCC
TCGCCTTCCTCCTCCTTGGAGTACTTGGACGTTCTCCATGTTCCAGTGCG
ACGTCTGTGGCATGTCCTGGGTCTCCCTTCACATTCCACTTTCGCATCCA
GTTTGACAAGACATTATCGCGCAGCAGTTCTTTACAGGCGGCCGATGCCG
TTCTTGACTTTTTTCTGGATGGGCAACTCCCCGCCGATCTTTTTGTCACT
AAAACTACAACTTTGCAGGATGTGTGCGAGAGCTCCATTGAGACCTTGTC
CGTCAGTTTTAAGAGTGCCCGCAATGCGGTCTTGCAGTATATGCGTAGTG
TTAAGAGAGCAAGCACTCATACATCAAGGAAAGGAAGGAGGAGAATGTTA
GGGGGGGGAATTCGGCGGATGTTTGCCGTCGTGTCCATGAGAGGAACTGC
TGGAATGAGAGCCATCAAGACTCATCAAGTATCTGGCAGGTTACAAACGC
TGCTTGCCCAAAACGGAACTTCAGTCAGTGTTATATCCAGTGTTCAAAAA
GGGCCTGCCCGGCTACCGAATCTCAAGGCGGGGGCGAAAGCTGTCAGTGT
CTCGCAAGTCAACCTCCCCGCGCCCACGCACACCTTTCAAGCCTACGCCG
CCTCTCCGACATTCAAATTCTTCATTCCCATCATTTTGGCTGATAGCGAC
TTTACCGGAGATTTGATCCCGGATGTGGTGGCATCAGAGGATAATGCAGT
CCTTCAGCCAACGCAGTACCGTGTGACAGCAGTGTACAGAAGTTCTCGGA
AAGAGGGCGATTGGACTCAGCTGACGGGGCGCGAAAAGCGTATGTTTGCC
TTCAAGACCTTGCGAAGGGATAAACAGGTCCGTCTGAGGCTTAACATGAA
GGTATCTCCCTTCTATTGGCGCCTGCGAGGTCAGAAGGACAGAAGTAAGT
CGCCAAAGACACTCCAAGCCATGCGGGAATTTCTGAGCCATCAGGGCCTC
AAGTTGAGTGCAGGCAGCGACTACAGTAGCACCGGCGGTGAGAGAGGCCC
AAGGTTTCTAAAATGGGCCCAAGGGAATGTAAATCAGAGTGCGGCTCTTT
TGGATGATGAGACAGCCTTCCACACGGACAATTACGCTGCAGCTGATTAC
GCTCAGGATTACGCCATCATCTTTCGGTCTCGCTCCTCCTCAGCGCCGCT
GCGAATGGATGTCACTGTTATACCTCTTGTCACGCGCAACAGACAACCAT
CAGGCAGTCTAAGTCCAGCAAAGAGTAGGGTCTGCCTTCCTGGCGACGCC
GCGCAAGGGCTCTCGAATGTGGGATCTGGAATTCCTGAGAGGCTTTCTGA
ACAGAGTGCCTGCCCGATGTTCCGCGAGCGAACGACCTCACCATCTAATG
TTCTCGACGATGGCTCATTCGAGGGTCTTCATCCCGAAGAGAGCGAATGG
GTAAAACAACGCAGTCTAAAAACAGGGCCAAAACTTGCTGCATTTATAGA
CGAACATCTATTTCCGATGAATTATTCGACACCTCCCAATCTCAAATTGG
CCATCGCGGTTTCAGGCGGAGGGAAGCGCTCGTTATATAATGCTGCTGGA
GTCACTTCCGGTCTCGCTCAAGCGGGTGTGTTGGATTTAGCAACGTGGAT
GGCAGGGTCTTCGGGAGGAAGTTGGCTTGTGGGCGGTGTGTATGGGGCGA
GTCTGGAGGAGGAGGCTTTGGTGGACCCCGGATCCTATATTGAAGAGCGC
CTGACAGATGTAAGCAAAAGCATTTTTGACGGCACATTTTGCGCGAACGA
TGTTTTGACCAATTTCGGAGTCAACGGGGTCGCTTCCTTGCCGGTCGCAC
CGTTCGCCTCCCAGCCCTCAGCGGCTGCGACCTCGGCCAGCATTCTGTGC
CAGAGCGAACTCAAATTTCAAAGCCCAGGAATCAAACCCACGCAGTTGGG
GAGTTCAGCATTGGCCGAGTATTGGGGCCGGGCCCTGGGTTACCAGTTGC
TGGGCACCTCATCCCTAGACGGGGGCGTCGGGGTTACCATGTCGGGTCTG
CTCGAGCACGGTCTGCTTGCTGAGCACCAAGCCCCTTTACCCTTGATCAT
TTTGCAAAAAGGCCAGGGAGCTAAACCTTTTCTATGGGAGGTTTCGCCTT
TCGACGTGGGTGTGCACAAGGGTGACGTGCACGTATCTTATCCTACTGCC
CTGTTGGGGACAGATTTATCGGATGCGAGCAAACGCTGCACCACCAAATT
GGATCAATTATCCTGGCTCATGGGCGTGTCTGGATGGATTTTCCCCTTAG
CCCTAGAGTACGCAGGAGGCACATTACAGTCGCTGGTTTGCGGAGAGGCG
GGGAGCGCATGCCAACCCGTGTCGATAAGTAATCCTTTTTTCGGACACAC
GGGACCGAGTCAGGCGGCTGTCGAAGGTGGTTCCCCGGGCTTGTTCAGCA
GCATTGAAGCGCCGATGTGGGATGGCTCCGCCACCTTCAACAATCCTGCG
TGGCCTTTTGTCACGCCTACACGGATGGCAGACGTGATGATCGTCATTGA
TTCAGGCGGGGCAGAGGGAGCAGAGGAGACAGACCCTCCTCTGTCGAGAG
CGCCCTTAGCCAACTGTGCATCTGACGCAGCCACGAGATGCACATCTAAC
ACATTCTACGAGCTCAGTGGCCCTTTGAACGGGAGGTGTTGCAGTGCCTG
CTCGCCCCTCTTGGACTTCTCGTGCTGGCCGACCCCGAACCCCAGCATGA
ATGACTTGTTCCGCCTTTCTGCCTACAGCGATGAACACACTTTGCCAGCA
GATATACCCCAACCCGGCTTTGAAGATCCCAAGCATGCAACGCAAGTGAG
TTTTTTTGGATGCCGCCAGCCCAATGTCACGGCGATAGTGTACATTCCCA
ATCGGGTCGTTTCGAGCGGAAAAAGTGGATTTACAGGGCTGCGCGGCGCC
CTGGAATTCAATGAGCTATTTGGGATCCCCGCAGATCCACTGACAGCACC
AGAGATACGTGATATACTTCGAAATGGAGAAGATCAGGTGGGGCAGATGG
ATTTCAAGAAATGCCTTGCCTGCCTGTTTGCAGCCTCCCTTCCGGAACAG
GACAGAGAAAACTTTTGGACGGTCACACGGGAATGTACTGCATGCCTGGA
GACCTATTGTCAAGCTTGACTGTAACTGTAAATACACGGACTGCGAAACA
AATCTCAGTCAAACTTTCTTTTGAAGCTCGTAAGTGTCCGAAAGTGCAAG
TTTTTTCCTTATAAAGTCTTAAACATTTCGT

protein sequence of rna835

>rna835-protein ID=rna835-protein|Name=rna835|organism=Nannochloropsis gaditana|type=polypeptide|length=434bp
MYPQLSPHAKTLYAKLTAFVDEECLPAEVVYERQHAELSSRWMIPEIIET
LKGKARKLGLWNLFMMERDVYHSGLNMVEYAVLSEVMGRSFLAPEACNCN
APDTGNMEVLAKYGNARQQAQWLNPLMEGSIRSTFLMTEPGVASSDATNI
ATSFRREGDEYVVNGRKWWSSGAMDPRCQVALVLGKVDSPVTAAAPRHRQ
HSILIVPMATPGVKVLRALSVFGFDDAPHGHAEVELAEVRVPVSNLILGE
GDGFKIAQGRLGPGRIHHCMRAIGLSERVLALATMRALTRRAFGKEIARQ
GAVQRDLAQCRISVDQARLLVLHAAWRMDTNKGAKGAQQEIAMIKVVAPS
AGQQVVDTAIQIHGGMGVCQDTILARAFAYMRSLRIADGPDDVHMRTVAR
YELKKAMEGATGPAADAWYRSGGEFAKENGQSRL

mRNA from alignment at CM002456.1:530744..532448-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna835 ID=rna835|Name=rna835|organism=Nannochloropsis gaditana|type=mRNA|length=1705bp|location=Sequence derived from alignment at CM002456.1:530744..532448- (Nannochloropsis gaditana)
AATCCAGTCCACGGAAGCTCCTGCTCCAGCTCCTATCACATGTTGAAAGC
AAGGAGAAACATTAATAAAGGTCGAGTCGTCTCGTGTGGTGCGGATAGTA
GCTGAAAAGGCAGCAAGGAAGCCCCAACGCCAACCTCCCCACCAGTAGCG
TGTTGCCAGTTGGTCAGCCTTTTTAGGACCTTGATGCTAAAATATGAAAA
GCTGAAGACGCATGTCATTTTCCGTAAGAAAATGATCTCCTTCAGAGACG
TTGCTTAAAAAAATCATCAATCTCTTTCCCAATAGAGAAACAGCCAAACT
ACACAAGGGCGACCAGAGCGATCATCTCCAATTGCGCTCTCCCTCGAGGG
ATGTATCCGCAGTTGTCTCCCCATGCCAAGACACTATACGCAAAGTTGAC
GGCATTCGTTGACGAGGAATGCCTTCCTGCGGAGGTGGTGTACGAGAGGC
AGCATGCTGAACTATCTTCTCGCTGGATGATTCCTGAAATAATAGAGACG
CTGAAGGGGAAGGCTCGAAAATTGGGGCTTTGGAACCTTTTCATGATGGA
ACGTGATGTCTATCATTCGGGCTTGAATATGGTAGAGTATGCGGTGCTGA
GCGAAGTTATGGGTAGATCTTTTTTGGCTCCAGAGGCGTGCAATTGCAAC
GCCCCCGATACGGGGAATATGGAAGTCCTTGCAAAGTATGGCAATGCCCG
ACAGCAAGCCCAGTGGCTCAATCCTTTGATGGAGGGAAGCATTCGCTCGA
CTTTCCTTATGACGGAACCTGGCGTGGCTTCCTCAGACGCCACGAATATT
GCCACAAGCTTCCGGCGTGAGGGCGATGAGTACGTGGTGAATGGCCGCAA
GTGGTGGAGCTCGGGCGCCATGGACCCTCGCTGTCAAGTGGCGCTGGTCT
TGGGGAAGGTAGATTCGCCAGTCACCGCAGCTGCACCGCGGCACCGGCAA
CATTCCATCTTGATAGTGCCCATGGCAACGCCAGGAGTGAAAGTATTGCG
AGCTTTGTCCGTTTTCGGCTTCGATGACGCCCCTCACGGGCACGCCGAGG
TCGAGCTCGCAGAGGTACGCGTCCCTGTCAGTAACCTGATCTTGGGAGAA
GGCGATGGATTCAAGATTGCGCAGGGGCGGTTGGGACCCGGGCGCATTCA
TCACTGCATGCGTGCCATCGGACTGTCGGAGCGGGTCCTTGCCTTGGCGA
CCATGCGCGCTCTGACGCGAAGGGCTTTCGGGAAAGAGATAGCGCGACAA
GGTGCCGTGCAACGAGATTTGGCTCAATGCCGGATCAGCGTGGACCAGGC
CCGCTTGCTGGTCCTCCATGCCGCCTGGCGGATGGATACGAACAAGGGGG
CGAAAGGCGCCCAGCAGGAGATCGCGATGATCAAGGTGGTGGCCCCGTCG
GCAGGGCAGCAGGTGGTAGACACAGCAATCCAGATCCACGGGGGAATGGG
GGTGTGCCAGGATACAATCTTGGCGAGGGCGTTCGCCTACATGCGCTCGT
TGCGGATCGCGGACGGTCCTGATGACGTCCACATGAGAACGGTGGCGCGT
TATGAGTTGAAAAAGGCGATGGAGGGAGCAACAGGGCCAGCTGCAGATGC
CTGGTATCGCAGCGGGGGAGAATTTGCGAAAGAGAATGGGCAAAGCAGAC
TCTGATTGTGTACGAAATGTTTAAGACTTTATAAGGAAAAAACTTGCACT
TTCGG

Coding sequence (CDS) from alignment at CM002456.1:530744..532448-

>rna835 ID=rna835|Name=rna835|organism=Nannochloropsis gaditana|type=CDS|length=1305bp|location=Sequence derived from alignment at CM002456.1:530744..532448- (Nannochloropsis gaditana)
ATGTATCCGCAGTTGTCTCCCCATGCCAAGACACTATACGCAAAGTTGAC
GGCATTCGTTGACGAGGAATGCCTTCCTGCGGAGGTGGTGTACGAGAGGC
AGCATGCTGAACTATCTTCTCGCTGGATGATTCCTGAAATAATAGAGACG
CTGAAGGGGAAGGCTCGAAAATTGGGGCTTTGGAACCTTTTCATGATGGA
ACGTGATGTCTATCATTCGGGCTTGAATATGGTAGAGTATGCGGTGCTGA
GCGAAGTTATGGGTAGATCTTTTTTGGCTCCAGAGGCGTGCAATTGCAAC
GCCCCCGATACGGGGAATATGGAAGTCCTTGCAAAGTATGGCAATGCCCG
ACAGCAAGCCCAGTGGCTCAATCCTTTGATGGAGGGAAGCATTCGCTCGA
CTTTCCTTATGACGGAACCTGGCGTGGCTTCCTCAGACGCCACGAATATT
GCCACAAGCTTCCGGCGTGAGGGCGATGAGTACGTGGTGAATGGCCGCAA
GTGGTGGAGCTCGGGCGCCATGGACCCTCGCTGTCAAGTGGCGCTGGTCT
TGGGGAAGGTAGATTCGCCAGTCACCGCAGCTGCACCGCGGCACCGGCAA
CATTCCATCTTGATAGTGCCCATGGCAACGCCAGGAGTGAAAGTATTGCG
AGCTTTGTCCGTTTTCGGCTTCGATGACGCCCCTCACGGGCACGCCGAGG
TCGAGCTCGCAGAGGTACGCGTCCCTGTCAGTAACCTGATCTTGGGAGAA
GGCGATGGATTCAAGATTGCGCAGGGGCGGTTGGGACCCGGGCGCATTCA
TCACTGCATGCGTGCCATCGGACTGTCGGAGCGGGTCCTTGCCTTGGCGA
CCATGCGCGCTCTGACGCGAAGGGCTTTCGGGAAAGAGATAGCGCGACAA
GGTGCCGTGCAACGAGATTTGGCTCAATGCCGGATCAGCGTGGACCAGGC
CCGCTTGCTGGTCCTCCATGCCGCCTGGCGGATGGATACGAACAAGGGGG
CGAAAGGCGCCCAGCAGGAGATCGCGATGATCAAGGTGGTGGCCCCGTCG
GCAGGGCAGCAGGTGGTAGACACAGCAATCCAGATCCACGGGGGAATGGG
GGTGTGCCAGGATACAATCTTGGCGAGGGCGTTCGCCTACATGCGCTCGT
TGCGGATCGCGGACGGTCCTGATGACGTCCACATGAGAACGGTGGCGCGT
TATGAGTTGAAAAAGGCGATGGAGGGAGCAACAGGGCCAGCTGCAGATGC
CTGGTATCGCAGCGGGGGAGAATTTGCGAAAGAGAATGGGCAAAGCAGAC
TCTGA

Synonyms

Publications