rna8347, rna8347 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8347
Unique Name	rna8347
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2555
Alignment location	KK037248.1:437917..439611 +

Link to JBrowse

Properties


Property Name	Value
Product	protein of unknown function DUF2040
Orig transcript id	gnl\|cribi\|Naga_100208g7.7566.mrna
Orig protein id	gnl\|cribi\|Naga_100208g7.7566
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:437917..439611 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100208g7	gene8086	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8347	rna8347-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22348.1	cds8320	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:437917..439611+
coding sequence from alignment at KK037248.1:437917..439611+

mRNA sequence

>rna8347 ID=rna8347|Name=rna8347|organism=Nannochloropsis gaditana|type=mRNA|length=2555bp
GTAGGCGGCTTGTGCGAGGTCCTTGACGGGACAGGGGAAGTTCAGAGAAC
CCCCGACGACTTTCTCTTTCCTACTCCCCTTCTCAAACGCGCACCGCGCC
AATCTTACCGTTGACCCACCGCATACACGCATGCACTTCCAGGTGGGGCA
CAATTATTGACGGGACGTGGCCTTGTAGCAAGGTGAACGGCGGCAAAACC
TGGTGAGCTCTTCTTCTTTCCTCTCCCGACTGAACTCTCGTCATCAAGAA
GAACAGCACGTTCAACCTCGACCTTCCATTGGCACGTTCCGTCCACGCAA
ATCATCTATTGTCGCCGTGAAAATCCGTAGAGAATCCGAGAAATATGAAC
TACCTTCTGGGCGGCGGCGGTCCTGTCCGCCCTAATTTACCTCCGCACCT
CATGGATGAGGGAGAGCGGGCGGCCGGCCTAGTTGAGAAAGCAACGTCGG
ACATCCTTCTGGCCGTGGATTGGGCAATGAATATGGAAGTAGTGGACGCC
TTAAACCGTAGCAGCGAGCAGGCTGTTAAACGTGAGATAATTCGGCAGAT
TCGCAAACGTTTGCAGCATCGGTCTACCCGCGTGGTGCACATGGCTTTGG
AATTAATCGAGACGGTGGTGAAAAATTGTGGACCCTCCGTGCACAAAGAA
GTGGCCACGCCAAAATTCATGGCAACGATGGCCAGGGTAGCGAGAACATA
TTCAGAGCGGACGGGTAAGGAGAATTTGCAGGTGGCCGACAAGGCTATGG
ATCTGATTCAGTCGTGGGGCGAGGCCTTCTTGCCCATGGCACATCAGTTG
CCTCTCTTCTCCCAGACGTACCATCAGCTGCGCAGGGAAGGTTTGACATT
TCGGACTCAATACGACGAAACCAAAGTTCCCATTATGACCCCTCCCCCTA
CCGCGCCTACGCACCGAGGCAGCGGAGAATTTGCCTTTGAGGGGGCGTTG
GAAGGGGAAAGCCCAGGCAGGGTGGCCGATCAGCAAGGGGGGGAGTCTTT
GCTTAAAATGGTGGAGAACAGCGAATCTATGCTACAGGATATCCTCTACT
CGATAGAGTCTTCGAAAGAGCTGGGCTCGGGGAACGAAGTGCTCCATGCC
GTTGTGGGTCAGTGCGCCAAACTCAGCCGGGCCTGTCAGGAGAGCATCGA
GGCCAAGGTCCTGTCGGGGGCTGAGGATGTGGAAGTGTATTTGGCGGCGA
ATGATCAGTTGCAGGCCGCCTTGCAGCTGTATGAGGGCATGAAAGCAGGG
ACCGTGGCCTTGCCTCTACCACAGGACCGACGGCCCCCCGGGGCAGTAGG
ACAAGGGGAGGAACGGGAGCTTATGTCGTTTGACGACGATTTCTTGACGG
GCCTTGGGAGCGAAATATCGGGCAAAGACTCCAAGCTCTCAGCGAATGAG
ATGCAGAAGAAGGGGGACGAGGCGGGCGGAGGCAAGCAAGCTTCCGTGCC
GTCGGTCTCGCCCATGTTGCCACCCTCCCGCCGGGACAGTATCAGCCGCA
GCCGCCGCGGATCCCGGGGGAGCGCGGGAAGCCGTGGGGCTGGTGATGAC
CTTCTGGACCTAAGTAACTTGGATTTGGCCAGCACCGCGAATACTGGAGG
TCGGGGGGAGGGGGGGGCTCAGCTCGGATTGGAAACGGCGGTCGGCCCCT
CCCCTCACGACAGGGACCCCTGGCGCGCCACTCCCCCCCAGATCGCCCCA
GCGTCGCAAACACTCACTGCTAGCGCCTCCATGCAAGCTGCGGATCCGTT
CGCATCGGGGGGACCGCTTCCCATCCTTCCTCCTCCCCGTTCTCTGGGCA
GCCCGCCAACGCAGGCCTCCACGAATGCGAGCGGCTCCTTGGCTGCTAAT
GGCAGAGACAACACAATCACCGACATGCACTCTCAAATTCCTTTGACAAC
TTTGACGCCTCAGCCATCTCTGCTAGTAGCTGGAGGGAGTGTCGGAATGC
AGACGACGGGGATGACGGGTGGCTGGGACGAGGGGGAATTGAAAGGCAGC
AACCCGTCCGGGGCACCGCACAGGATGTCTTTGTTGTCATCTTCGATGAA
TGCACAAGCTGTGCCATCATCTCATACTTCCACGGGAGGGTTCACGAGCC
TAGGTTCGAGTCAAAGTGGGGGTGTGACAGGCGGCTTTGTGTCGGGGGAA
GGAAGTATGGCACACCAAACGCCTTTTCAACCCGTGAAGCCGCAATCGCA
GCAACAAAAGCAAAACGGTAAGGGTCAGGATTTTAGCGACTGGTTGCCAC
AGCCACAACAGCAACAGCAGTTGCAGTGGCCGCCTGTGGTCCAGCAGCAA
ACCATGCAACAGGGGCAACGGGTTGTATCAACCGGGTTGTCGACGACGCA
GCAACATGACCGACAGCAGCAACAGCAGCAAGAAAACCCTTTTGATGCAT
TCATGTAATGATTTAAGGTTGTGATGGCATTTGTAAGAAGAAATGGACGT
GTAGAAATAGCAACGAAACGTTTTTTGGTGTTCTTTTGGGGCTCATGATG
CTTTCCATTTTGAACTTTTGAATCGCCCAAACTTCAAGCGGTCGGGACGC
GTACA

protein sequence of rna8347

>rna8347-protein ID=rna8347-protein|Name=rna8347|organism=Nannochloropsis gaditana|type=polypeptide|length=382bp
MYGQQSGPKKYGLVVPQKKAVPGMRGRPRPASAAPRRPAGSAFSLDDDDS
DDNGQEEDGLASKASFNKMLQAQSIKAQKSLEEAEAAARASDPSIYDYDA
VYDEIHAKREERDNMAAEAAKEEKKTSRYITNLKRAAELKKQEQDRFYER
RLAKERKEEDALYKDKDVFVTSAYKKKLMETQKWETIDRLEEEAARRREE
EAGGKGAPGGGSGMDAFFSNLLTKNIAMGADVKVAARSAYTVGSKQQESA
FGTSLPSATSTAAETVDNKDVLDPSSRVVDHGGASHRRGEEADTGKRAAI
TAPSGEEFVDKRQRLATISPPQLPLPREERHHHDAGEAKTASPADVNPEE
RKRSKEEAIQKARERFLARKKGEVHNENITES

mRNA from alignment at KK037248.1:437917..439611+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8347 ID=rna8347|Name=rna8347|organism=Nannochloropsis gaditana|type=mRNA|length=1695bp|location=Sequence derived from alignment at KK037248.1:437917..439611+ (Nannochloropsis gaditana)
AGGGGAGGTTTTTgacggcctcgtccacacCTAGACCGGCCACATGGTTG
TCTGATCTTCGTCTTGACACTATTTCAATCTCTGGGCACAGACATCATGT
ACGGACAGCAGTCAGGACCCAAAAAGTATGGTCTTGTGGTCCCTCAGAAA
AAGGCTGTGCCCGGCATGCGGGGCCGGCCCCGTCCTGCATCGGCAGCACC
TCGACGGCCTGCTGGAAGCGCTTTCTCACTGGACGACGATGATTCCGACG
ACAacggacaggaggaagacgggttGGCTTCCAAAGCGTCGTTCAACAAG
ATGCTGCAGGTGAGTTTTTGGAATCGGAAGGTGTGACGGTGATAGCCGCA
AATGCTTGGCTCACGCCTCCTTCGAGGTGGCTTAAACTTTAATCATTTAC
GGGATAAGCATGCATTGTAATTTAGTCTTCTTCATCCGTACTGCACAATC
ATTTCCGCGTAATTCTTCCAGGCTCAGAGCATAAAGGCACAGAAgtcgtt
ggaggaggcggaagccgcCGCACGGGCCTCTGACCCTTCCATCTATGATT
ACGACGCTGTGTACGATGAGATACACGCCAAAAGAGAAGAGCGAGATAAC
ATGGCAGCTGAAgcagcaaaggaggaaaagaaaacatcGCGGTACATCAC
AAATTTGAAGCGGGCGGCAGAATTGAAGAAGCAAGAGCAAGATCGATTTT
ACGAGCGTCGTTTGGCGAAAGAgcgcaaagaggaagacgcgcTATACAAA
GACAAGGACGTGTTTGGTATGTTGCAGAgtcaaggagggaaagatttGCT
TTTCCATGAGATTGTACTGGGGTGATGAGAAAGTGCTGGCGCTGTGCACC
GTCGGTCGCCGAGCCTCGACCTCATTGTCCAGACATGTCCCGGCCGTCAG
CTCTTTCAGATGTACGGATGACGCTGAAATATGGAAGGTATTTTTACTAA
GATGTTGATGGTGTCCTCATATTTTCTCTACCCATTCTATTCCTCAGTGA
CCAGTGCCTACAAAAAAAAGCTGATGGAGACGCAGAAATGGGAGACGATC
GACaggttggaagaagaggcggcccgtcgccgggaggaagaagcaggcgg
CAAAGGAGCTCCTGGGGGCGGGAGTGGAATGGACGCCTTCTTTTCGAACT
TACTGACGAAGAACATTGCCATGGGCGCAGATGTGAAAGTGGCTGCACGC
TCGGCCTACACTGTCGGATCCAAGCAACAAGAATCTGCGTTTGGCACATC
CTTGCCCTCCGCGACCTCCACAGCTGCAGAGACCGTCGATAATAAGGACG
TCTTGGATCCCTCCAGTCGCGTTGTGGACCATGGTGGTGCGTCTCAtaga
cgaggggaagaggcagataCGGGCAAAAGAGCAGCAATCACGGCTCCCTC
CGGGGAAGAGTTTGTGGATAAACGGCAACGATTGGCGACAATATCGCCGC
CACAACTGCCGTTACCAAGAGAGGAACGTCATCACCACGatgcaggagaa
gcgaaGACAGCAAGTCCAGCTGATGTAAATCcagaggagagaaaaagatc
aaaggaagaagcgatTCAAAAGGCAAGGGAGCGGTTTTTGGCACGCAAGA
AAGGCGAGGTACACAACGAAAACATCACTGAGTCATAAAAAACGTTTTGG
ATGTTTTAGCCCCTCAAAGTAATTAAATATTAAATGTGATCATGA

Coding sequence (CDS) from alignment at KK037248.1:437917..439611+

>rna8347 ID=rna8347|Name=rna8347|organism=Nannochloropsis gaditana|type=CDS|length=3447bp|location=Sequence derived from alignment at KK037248.1:437917..439611+ (Nannochloropsis gaditana)
ATGTACGGACAGCAGTCAGGACCCAAAAAGTATGGTCTTGTGGTCCCTCA
GAAAAAGGCTGTGCCCGGCATGCGGGGCCGGCCCCGTCCTGCATCGGCAG
CACCTCGACGGCCTGCTGGAAGCGCTTTCTCACTGGACGACGATGATTCC
GACGACAacggacaggaggaagacgggttGGCTTCCAAAGCGTCGTTCAA
CAAGATGCTGCAGGCTCAGAGCATAAAGGCACAGAAgtcgttggaggagg
cggaagccgcCGCACGGGCCTCTGACCCTTCCATCTATGATTACGACGCT
GTGTACGATGAGATACACGCCAAAAGAGAAGAGCGAGATAACATGGCAGC
TGAAgcagcaaaggaggaaaagaaaacatcGCGGTACATCACAAATTTGA
AGCGGGCGGCAGAATTGAAGAAGCAAGAGCAAGATCGATTTTACGAGCGT
CGTTTGGCGAAAGAgcgcaaagaggaagacgcgcTATACAAAGACAAGGA
CGTGTTTGTGACCAGTGCCTACAAAAAAAAGCTGATGGAGACGCAGAAAT
GGGAGACGATCGACaggttggaagaagaggcggcccgtcgccgggaggaa
gaagcaggcggCAAAGGAGCTCCTGGGGGCGGGAGTGGAATGGACGCCTT
CTTTTCGAACTTACTGACGAAGAACATTGCCATGGGCGCAGATGTGAAAG
TGGCTGCACGCTCGGCCTACACTGTCGGATCCAAGCAACAAGAATCTGCG
TTTGGCACATCCTTGCCCTCCGCGACCTCCACAGCTGCAGAGACCGTCGA
TAATAAGGACGTCTTGGATCCCTCCAGTCGCGTTGTGGACCATGGTGGTG
CGTCTCAtagacgaggggaagaggcagataCGGGCAAAAGAGCAGCAATC
ACGGCTCCCTCCGGGGAAGAGTTTGTGGATAAACGGCAACGATTGGCGAC
AATATCGCCGCCACAACTGCCGTTACCAAGAGAGGAACGTCATCACCACG
atgcaggagaagcgaaGACAGCAAGTCCAGCTGATGTAAATCcagaggag
agaaaaagatcaaaggaagaagcgatTCAAAAGGCAAGGGAGCGGTTTTT
GGCACGCAAGAAAGGCGAGGTACACAACGAAAACATCACTGAGTCATAAA
TGTACGGACAGCAGTCAGGACCCAAAAAGTATGGTCTTGTGGTCCCTCAG
AAAAAGGCTGTGCCCGGCATGCGGGGCCGGCCCCGTCCTGCATCGGCAGC
ACCTCGACGGCCTGCTGGAAGCGCTTTCTCACTGGACGACGATGATTCCG
ACGACAacggacaggaggaagacgggttGGCTTCCAAAGCGTCGTTCAAC
AAGATGCTGCAGGCTCAGAGCATAAAGGCACAGAAgtcgttggaggaggc
ggaagccgcCGCACGGGCCTCTGACCCTTCCATCTATGATTACGACGCTG
TGTACGATGAGATACACGCCAAAAGAGAAGAGCGAGATAACATGGCAGCT
GAAgcagcaaaggaggaaaagaaaacatcGCGGTACATCACAAATTTGAA
GCGGGCGGCAGAATTGAAGAAGCAAGAGCAAGATCGATTTTACGAGCGTC
GTTTGGCGAAAGAgcgcaaagaggaagacgcgcTATACAAAGACAAGGAC
GTGTTTGTGACCAGTGCCTACAAAAAAAAGCTGATGGAGACGCAGAAATG
GGAGACGATCGACaggttggaagaagaggcggcccgtcgccgggaggaag
aagcaggcggCAAAGGAGCTCCTGGGGGCGGGAGTGGAATGGACGCCTTC
TTTTCGAACTTACTGACGAAGAACATTGCCATGGGCGCAGATGTGAAAGT
GGCTGCACGCTCGGCCTACACTGTCGGATCCAAGCAACAAGAATCTGCGT
TTGGCACATCCTTGCCCTCCGCGACCTCCACAGCTGCAGAGACCGTCGAT
AATAAGGACGTCTTGGATCCCTCCAGTCGCGTTGTGGACCATGGTGGTGC
GTCTCAtagacgaggggaagaggcagataCGGGCAAAAGAGCAGCAATCA
CGGCTCCCTCCGGGGAAGAGTTTGTGGATAAACGGCAACGATTGGCGACA
ATATCGCCGCCACAACTGCCGTTACCAAGAGAGGAACGTCATCACCACGa
tgcaggagaagcgaaGACAGCAAGTCCAGCTGATGTAAATCcagaggaga
gaaaaagatcaaaggaagaagcgatTCAAAAGGCAAGGGAGCGGTTTTTG
GCACGCAAGAAAGGCGAGGTACACAACGAAAACATCACTGAGTCATAAAT
GTACGGACAGCAGTCAGGACCCAAAAAGTATGGTCTTGTGGTCCCTCAGA
AAAAGGCTGTGCCCGGCATGCGGGGCCGGCCCCGTCCTGCATCGGCAGCA
CCTCGACGGCCTGCTGGAAGCGCTTTCTCACTGGACGACGATGATTCCGA
CGACAacggacaggaggaagacgggttGGCTTCCAAAGCGTCGTTCAACA
AGATGCTGCAGGCTCAGAGCATAAAGGCACAGAAgtcgttggaggaggcg
gaagccgcCGCACGGGCCTCTGACCCTTCCATCTATGATTACGACGCTGT
GTACGATGAGATACACGCCAAAAGAGAAGAGCGAGATAACATGGCAGCTG
AAgcagcaaaggaggaaaagaaaacatcGCGGTACATCACAAATTTGAAG
CGGGCGGCAGAATTGAAGAAGCAAGAGCAAGATCGATTTTACGAGCGTCG
TTTGGCGAAAGAgcgcaaagaggaagacgcgcTATACAAAGACAAGGACG
TGTTTGTGACCAGTGCCTACAAAAAAAAGCTGATGGAGACGCAGAAATGG
GAGACGATCGACaggttggaagaagaggcggcccgtcgccgggaggaaga
agcaggcggCAAAGGAGCTCCTGGGGGCGGGAGTGGAATGGACGCCTTCT
TTTCGAACTTACTGACGAAGAACATTGCCATGGGCGCAGATGTGAAAGTG
GCTGCACGCTCGGCCTACACTGTCGGATCCAAGCAACAAGAATCTGCGTT
TGGCACATCCTTGCCCTCCGCGACCTCCACAGCTGCAGAGACCGTCGATA
ATAAGGACGTCTTGGATCCCTCCAGTCGCGTTGTGGACCATGGTGGTGCG
TCTCAtagacgaggggaagaggcagataCGGGCAAAAGAGCAGCAATCAC
GGCTCCCTCCGGGGAAGAGTTTGTGGATAAACGGCAACGATTGGCGACAA
TATCGCCGCCACAACTGCCGTTACCAAGAGAGGAACGTCATCACCACGat
gcaggagaagcgaaGACAGCAAGTCCAGCTGATGTAAATCcagaggagag
aaaaagatcaaaggaagaagcgatTCAAAAGGCAAGGGAGCGGTTTTTGG
CACGCAAGAAAGGCGAGGTACACAACGAAAACATCACTGAGTCATAA

Synonyms

Publications