rna8342, rna8342 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8342
Unique Name	rna8342
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1901
Alignment location	KK037248.1:428805..430902 -

Link to JBrowse

Properties


Property Name	Value
Product	trna pseudouridine synthase pus10
Orig transcript id	gnl\|cribi\|Naga_100208g13.7565.mrna
Orig protein id	gnl\|cribi\|Naga_100208g13.7565
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:428805..430902 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100208g13	gene8081	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22347.1	cds8315	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8342	rna8342-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:428805..430902-
coding sequence from alignment at KK037248.1:428805..430902-

mRNA sequence

>rna8342 ID=rna8342|Name=rna8342|organism=Nannochloropsis gaditana|type=mRNA|length=1901bp
GTCGGTAGTGTGCGTGAGGTCAGAAATACGGGTCGGAGGAAGGAAGGAGC
GGGGGGGCTCTCTGCTCGTCGTATCCTCAGGGCTAGGCAAGCTTGGACGC
CCGGAGGCTTGGGCCAAGGAATGTGCATGGCATCTTGGGAGAGGGTGAGA
CGAGGGAAATTATGCACCACACGCTGTATCTTTGGAACAGGCGGGGGAAG
GGGGATGTTGCGTCGCGTTACAAGTGTGTTTTACACATGTCGCTTTTAGC
AGGTCTTAGTATCCGCTACTCCTTGTCGAAAGGGCTCCAGTTGTAAATGC
CTTGGTTCTTCTTCCGACATCCAATCTCAGCGAGACACAGGAAGCAGCAA
GTGTGTGTCTCATTTTCTTATCCGTACCCGTTCAAGAAGAAAGCAGGTAC
GGGGCGCGAGTGCAGGGGGGAAGTTACCCCGCCATGGAGGAACAGGCCTC
ACTTGCGCAGACGAGCTCCTCAACAAGCAGGACAAGTAGCGCTGTGGACG
TTGGCCCCGTGGCAGAAAGTCATGGAACAGTCCTTCCTTACCAATCACAA
AGCATAGTGGAGGAGCCAAATCATGCGCGCATGCCGATGGATAAACAAGA
GGTAGAGGTGCGCGGGGCTGGCGGGCATGCTGAGGGAGAAAGCCTAGCGT
GGCCCTATGCCGCAACCGGGTGTGACGTCTTCATCAATGCCGCCCACAAG
GAATCCAACCTTCCATCAGGAGCACGACAGAATGGGAAGGCGAGGGTCTC
CCCGCCTTGGACCTATTTTCCAAATTCGTGCGCTCTCGGCCTTGGAGATC
GGAAGCCTGGTGTGTGTCCGCCGCATGGAGTGCCTGGTCATCCGGGCCGC
GAATCCACCACGCTGCCTTTCATCGTGTCTGCCCCCATGGCAAGCAGGGC
AGCCGAACCCCTCTCCCCACCTGTGGCCCCGTTCACCTATACCGCTGCCT
CGCCTAGGGCAGAGTTTGAGTGCGAAGGACAAGAGGGGCCTCGCGCCCTG
GGAAACTCGTCTAGCGCGCTGCAGTGCCAGGCGAACGCCAAAGAGGACGT
GGACGTGGACACAGACAGGGGGAATGGAACGCTTAAATCAGGGAAAGGTG
GTGGGAAGGGCGAGAAAGGCGGGAGGCCGGGAAATGGAGGGCATGGGACC
CCTCCCAACCCCGTGGGAGGACGAAAGCGCAAAGTCCCCACGCCCTGGAC
GCCGGCGGAAGACGCCCGCCTCCGGGAAGGCATCCAGGTCGTGGGTCCCC
GGCAATGGCTTCGCATCTCCCAGGAATTCATGCGCGGGGTGCGGAGCGAG
ACCCAGTGCTACCAGCGCTGGGAGCGGACCTTGAAACCGGGGGTGAAGAC
AGGGCCCTGGACGAGGGAGGAGGACGCCGTCCTGACGGCATGCGTGCAGA
GCGGCATGACCCGGTGGTCGGAGATCGCCAAACGGATACCCGGACGGCTG
AGCAAGCGGGTTCGCGAGCGGTGGACCTGCCAGTTGCACCCGTCGCGGAA
ACACCACGGCCTGGTGCCTTGGACCCCGGAGGAGGAAGCTCGCCTGGCCT
CGGTGCGGGCGCGACTGGGGAATCGGTGGGTGGAGATTGCCAAGCTTTTC
CCGGGCCGGAGTGAGAACGACGTGAAGAACAAGGCCTATTGCTCTTTGCG
AAAGCAGGAGCGGCGCGCCAGTCGGGTCCGGGCAGAGCAAGAGAAGGCGA
AGGCGGGGAAGGGGTCGGAGGTGTCCGTGTGTGCGGTAGCGGGGGCCATA
GCGCGGGAAGGGAGGGCGCAAGACGGTCGGAAGAAGAGGAGGGGGAAGCA
AAGGCGGGAACTGGAGTTGGAGGACGTGATCGACAGGAAGACGTTGTCCA
AGGCACACGACACTCTCTCCACCATCTACCAAGCCGCTCTGGACGAGGAT
G

protein sequence of rna8342

>rna8342-protein ID=rna8342-protein|Name=rna8342|organism=Nannochloropsis gaditana|type=polypeptide|length=611bp
MPVSPPPSLPLPDEDTWSLPAFSLLYPKINCIRCSLRLAGVCDAEILRAP
ERQLRATLCSAQGAEISHATCRMCPLCLGILQSSGDRELGSALLDAILAQ
IKTKKYVLPTGGDSPDMTQHKSTTDPVGEMVAEHSKYLLERKVPFILGVS
LPGSVAIRDRAALEWVACEQQTGRHQDPGRRLDVKEILKAVLESCLPKHY
PCLYAASTPSPGALRVDLSFWHAGADEADYHQGVRILLPNATGKAFNRTR
KRRRHEESNQENLCNATVVARVLQAATGDPNVRSGLAVFFARNLMPPSTH
SPTAYAALETPAASSVQVTREAIFLAGRYLKLSREMPQTLWVVEGGRRKG
KASVEEVVAEPVLDWTSATSAVLIGSGREDMDVRMLGTGRPFLLRVNDPR
RIPGREEVAGLEAAINQTTGLNSGGDVRVHGLRLSDKHEVKAMHAGATEK
VKMYSCRVWVGGRVDRALLATSLEGSKELVVAQKTPIRVLHRRALLTRPK
VIHEMRCTDVKVVEGGEEGGEEGGEMAVGTYFTLHLRTSAGTYIKEFVHG
DMGRTRPSVGDLLGGLEADLLALDVTGIVMEGEEGEREEGKEQEEEAGGG
VKGAEINGIVV

mRNA from alignment at KK037248.1:428805..430902-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8342 ID=rna8342|Name=rna8342|organism=Nannochloropsis gaditana|type=mRNA|length=2098bp|location=Sequence derived from alignment at KK037248.1:428805..430902- (Nannochloropsis gaditana)
CCCTCGTCCTGCGATAGGTTACACGGGCTGTCTGATAAGGCGCTTTAGGA
CGACTGATACTCGTCTCTTGAAAAGGAGGTACTTTGTTCGACGGAGTAAG
CTCATACCATTTTATTCCTATAGAAAGACAGGGGCAGCGGCAGGCGGGCG
TAATGCCTGTTTCCCCACCACCTTCGTTGCCTTTGCCGGACGAGGATACC
TGGTCGCTTCCAGCATTCAGTCTTCTATACCCCAAAATAAATTGCATTCG
ATGCAGCCTGCGCCTGGCGGGCGTATGCGATGCTGAAATACTTCGTGCCC
CGGAACGTCAACTCCGTGCCACCCTTTGCTCTGCGCAGGGTGCAGAAATA
AGCCATGCCACCTGCAGAATGTGTCCGCTTTGTTTGGGCATACTACAGTC
GTCAGGTGATAGGGAACTTGGCTCGGCTCTGTTAGATGCAATTTTAGCGC
AAATTAAAACGAAAAAGTACGTGTTGCCGACTGGCGGTGATAGCCCTGAC
ATGACACAACATAAAAGTACCACCGACCCTGTCGGTGAAATGGTTGCTGA
ACACTCCAAATACCTCCTGGAGAGAAAAGTTCCATTCATCCTAGGAGTCT
CACTGCCCGGTTCTGTGGCTATCCGGGACCGCGCCGCCCTTGAATGGGTA
GCGTGCGAGCAGCAAACTGGGCGTCACCAGGACCCGGGGCGGCGCCTGGA
CGTGAAAGAAATTCTGAAAGCAGTCTTGGAGTCATGCTTACCGAAGCATT
ATCCATGCTTGTACGCGGCATCTACTCCTTCCCCTGGGGCCCTGAGAGTG
GACCTCTCTTTCTGGCACGCGGGGGCCGACGAGGCGGACTACCACCAGGG
TGTGCGCATTCTTTTGCCGAACGCCACGGGGAAGGCCTTTAACCGTACCC
GGAAGCGCCGGCGACACGAGGAGAGCAATCAGGAAAACCTCTGTAATGCC
ACAGTGGTAGCGCGCGTCCTACAGGCGGCCACGGGTGACCCGAACGTGCG
GTCAGGCCTGGCTGTTTTTTTTGCGCGAAACCTGATGCCTCCTTCCACGC
ATTCGCCCACTGCGTACGCGGCGCTGGAGACGCCGGCCGCTTCTTCGGTC
CAAGTGACCCGAGAGGCAATCTTTCTGGCGGGCCGGTACCTAAAATTAAG
CCGAGAGATGCCGCAGACGTTGTGGGTGGTAGAGGGGGGAAGGCGAAAGG
GGAAAGCCTCGGTAGAGGAGGTAGTCGCAGAGCCCGTGCTCGATTGGACA
AGCGCGACCTCGGCCGTGCTGATAGGTTCGGGCAGAGAGGACATGGACGT
GAGGATGTTGGGAACCGGGCGGCCTTTCCTCCTCCGCGTGAACGACCCCC
GGCGGATCCCGGGGAGAGAGGAGGTGGCGGGCTTGGAGGCGGCAATCAAT
CAGACGACGGGCCTGAACTCGGGGGGGGACGTGCGAGTGCACGGGTTGCG
ACTCTCGGACAAGCATGAAGTGAAGGCAATGCACGCAGGGGCCACGGAGA
AGGTGAAGATGTACAGCTGTCGTGTTTGGGTGGGGGGCCGCGTGGACCGA
GCGCTCCTGGCTACTAGTCTGGAGGGGAGCAAGGAGCTAGTGGTAGCGCA
GAAAACGCCGATCCGGGTCTTACATCGCCGCGCGCTTTTGACTCGGCCTA
AGGTGATCCATGAGATGCGTTGCACGGATGTGAAGGTGGTGGAGGGCGGG
GAGGAGGGCGGGGAGGAAGGCGGGGAGATGGCTGTGGGAACGTACTTCAC
TTTGCATTTACGAACTTCCGCGGGCACCTATATCAAAGAATTTGTCCACG
GAGACATGGGAAGGACCAGGCCGAGCGTGGGCGACCTTTTGGGAGGCCTG
GAGGCGGATCTATTGGCCTTGGACGTGACGGGCATCGTGATGGAGGGCGA
GGAGGGGGAACGGGAGGAAGGAAAGGAACAAGAGGAGGAGGCAGGAGGAG
GCGTGAAAGGTGCCGAGATAAATGGGATCGTGGTGTAAGGAAATGATGTC
AATGTTGGTGCTTGGTGTCCTGTTGGTCCGAAGTCCAGCGAGACGAGCCT
GGCATCCGCCGCAAGGGCCTCCGACAAGGCAGTACGTGCTCAATTTCA

Coding sequence (CDS) from alignment at KK037248.1:428805..430902-

>rna8342 ID=rna8342|Name=rna8342|organism=Nannochloropsis gaditana|type=CDS|length=1836bp|location=Sequence derived from alignment at KK037248.1:428805..430902- (Nannochloropsis gaditana)
ATGCCTGTTTCCCCACCACCTTCGTTGCCTTTGCCGGACGAGGATACCTG
GTCGCTTCCAGCATTCAGTCTTCTATACCCCAAAATAAATTGCATTCGAT
GCAGCCTGCGCCTGGCGGGCGTATGCGATGCTGAAATACTTCGTGCCCCG
GAACGTCAACTCCGTGCCACCCTTTGCTCTGCGCAGGGTGCAGAAATAAG
CCATGCCACCTGCAGAATGTGTCCGCTTTGTTTGGGCATACTACAGTCGT
CAGGTGATAGGGAACTTGGCTCGGCTCTGTTAGATGCAATTTTAGCGCAA
ATTAAAACGAAAAAGTACGTGTTGCCGACTGGCGGTGATAGCCCTGACAT
GACACAACATAAAAGTACCACCGACCCTGTCGGTGAAATGGTTGCTGAAC
ACTCCAAATACCTCCTGGAGAGAAAAGTTCCATTCATCCTAGGAGTCTCA
CTGCCCGGTTCTGTGGCTATCCGGGACCGCGCCGCCCTTGAATGGGTAGC
GTGCGAGCAGCAAACTGGGCGTCACCAGGACCCGGGGCGGCGCCTGGACG
TGAAAGAAATTCTGAAAGCAGTCTTGGAGTCATGCTTACCGAAGCATTAT
CCATGCTTGTACGCGGCATCTACTCCTTCCCCTGGGGCCCTGAGAGTGGA
CCTCTCTTTCTGGCACGCGGGGGCCGACGAGGCGGACTACCACCAGGGTG
TGCGCATTCTTTTGCCGAACGCCACGGGGAAGGCCTTTAACCGTACCCGG
AAGCGCCGGCGACACGAGGAGAGCAATCAGGAAAACCTCTGTAATGCCAC
AGTGGTAGCGCGCGTCCTACAGGCGGCCACGGGTGACCCGAACGTGCGGT
CAGGCCTGGCTGTTTTTTTTGCGCGAAACCTGATGCCTCCTTCCACGCAT
TCGCCCACTGCGTACGCGGCGCTGGAGACGCCGGCCGCTTCTTCGGTCCA
AGTGACCCGAGAGGCAATCTTTCTGGCGGGCCGGTACCTAAAATTAAGCC
GAGAGATGCCGCAGACGTTGTGGGTGGTAGAGGGGGGAAGGCGAAAGGGG
AAAGCCTCGGTAGAGGAGGTAGTCGCAGAGCCCGTGCTCGATTGGACAAG
CGCGACCTCGGCCGTGCTGATAGGTTCGGGCAGAGAGGACATGGACGTGA
GGATGTTGGGAACCGGGCGGCCTTTCCTCCTCCGCGTGAACGACCCCCGG
CGGATCCCGGGGAGAGAGGAGGTGGCGGGCTTGGAGGCGGCAATCAATCA
GACGACGGGCCTGAACTCGGGGGGGGACGTGCGAGTGCACGGGTTGCGAC
TCTCGGACAAGCATGAAGTGAAGGCAATGCACGCAGGGGCCACGGAGAAG
GTGAAGATGTACAGCTGTCGTGTTTGGGTGGGGGGCCGCGTGGACCGAGC
GCTCCTGGCTACTAGTCTGGAGGGGAGCAAGGAGCTAGTGGTAGCGCAGA
AAACGCCGATCCGGGTCTTACATCGCCGCGCGCTTTTGACTCGGCCTAAG
GTGATCCATGAGATGCGTTGCACGGATGTGAAGGTGGTGGAGGGCGGGGA
GGAGGGCGGGGAGGAAGGCGGGGAGATGGCTGTGGGAACGTACTTCACTT
TGCATTTACGAACTTCCGCGGGCACCTATATCAAAGAATTTGTCCACGGA
GACATGGGAAGGACCAGGCCGAGCGTGGGCGACCTTTTGGGAGGCCTGGA
GGCGGATCTATTGGCCTTGGACGTGACGGGCATCGTGATGGAGGGCGAGG
AGGGGGAACGGGAGGAAGGAAAGGAACAAGAGGAGGAGGCAGGAGGAGGC
GTGAAAGGTGCCGAGATAAATGGGATCGTGGTGTAA

Synonyms

Publications