EWM22347.1, cds8315 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22347.1 vs. NCBI_GenBank
Match: gi|585102847|gb|EWM22347.1| (trna pseudouridine synthase pus10 [Nannochloropsis gaditana]) HSP 1 Score: 1245.34 bits (3221), Expect = 0.000e+0 Identity = 611/611 (100.00%), Postives = 611/611 (100.00%), Query Frame = 0
Query: 1 MPVSPPPSLPLPDEDTWSLPAFSLLYPKINCIRCSLRLAGVCDAEILRAPERQLRATLCSAQGAEISHATCRMCPLCLGILQSSGDRELGSALLDAILAQIKTKKYVLPTGGDSPDMTQHKSTTDPVGEMVAEHSKYLLERKVPFILGVSLPGSVAIRDRAALEWVACEQQTGRHQDPGRRLDVKEILKAVLESCLPKHYPCLYAASTPSPGALRVDLSFWHAGADEADYHQGVRILLPNATGKAFNRTRKRRRHEESNQENLCNATVVARVLQAATGDPNVRSGLAVFFARNLMPPSTHSPTAYAALETPAASSVQVTREAIFLAGRYLKLSREMPQTLWVVEGGRRKGKASVEEVVAEPVLDWTSATSAVLIGSGREDMDVRMLGTGRPFLLRVNDPRRIPGREEVAGLEAAINQTTGLNSGGDVRVHGLRLSDKHEVKAMHAGATEKVKMYSCRVWVGGRVDRALLATSLEGSKELVVAQKTPIRVLHRRALLTRPKVIHEMRCTDVKVVEGGEEGGEEGGEMAVGTYFTLHLRTSAGTYIKEFVHGDMGRTRPSVGDLLGGLEADLLALDVTGIVMEGEEGEREEGKEQEEEAGGGVKGAEINGIVV 611
MPVSPPPSLPLPDEDTWSLPAFSLLYPKINCIRCSLRLAGVCDAEILRAPERQLRATLCSAQGAEISHATCRMCPLCLGILQSSGDRELGSALLDAILAQIKTKKYVLPTGGDSPDMTQHKSTTDPVGEMVAEHSKYLLERKVPFILGVSLPGSVAIRDRAALEWVACEQQTGRHQDPGRRLDVKEILKAVLESCLPKHYPCLYAASTPSPGALRVDLSFWHAGADEADYHQGVRILLPNATGKAFNRTRKRRRHEESNQENLCNATVVARVLQAATGDPNVRSGLAVFFARNLMPPSTHSPTAYAALETPAASSVQVTREAIFLAGRYLKLSREMPQTLWVVEGGRRKGKASVEEVVAEPVLDWTSATSAVLIGSGREDMDVRMLGTGRPFLLRVNDPRRIPGREEVAGLEAAINQTTGLNSGGDVRVHGLRLSDKHEVKAMHAGATEKVKMYSCRVWVGGRVDRALLATSLEGSKELVVAQKTPIRVLHRRALLTRPKVIHEMRCTDVKVVEGGEEGGEEGGEMAVGTYFTLHLRTSAGTYIKEFVHGDMGRTRPSVGDLLGGLEADLLALDVTGIVMEGEEGEREEGKEQEEEAGGGVKGAEINGIVV
Sbjct: 1 MPVSPPPSLPLPDEDTWSLPAFSLLYPKINCIRCSLRLAGVCDAEILRAPERQLRATLCSAQGAEISHATCRMCPLCLGILQSSGDRELGSALLDAILAQIKTKKYVLPTGGDSPDMTQHKSTTDPVGEMVAEHSKYLLERKVPFILGVSLPGSVAIRDRAALEWVACEQQTGRHQDPGRRLDVKEILKAVLESCLPKHYPCLYAASTPSPGALRVDLSFWHAGADEADYHQGVRILLPNATGKAFNRTRKRRRHEESNQENLCNATVVARVLQAATGDPNVRSGLAVFFARNLMPPSTHSPTAYAALETPAASSVQVTREAIFLAGRYLKLSREMPQTLWVVEGGRRKGKASVEEVVAEPVLDWTSATSAVLIGSGREDMDVRMLGTGRPFLLRVNDPRRIPGREEVAGLEAAINQTTGLNSGGDVRVHGLRLSDKHEVKAMHAGATEKVKMYSCRVWVGGRVDRALLATSLEGSKELVVAQKTPIRVLHRRALLTRPKVIHEMRCTDVKVVEGGEEGGEEGGEMAVGTYFTLHLRTSAGTYIKEFVHGDMGRTRPSVGDLLGGLEADLLALDVTGIVMEGEEGEREEGKEQEEEAGGGVKGAEINGIVV 611
BLAST of EWM22347.1 vs. NCBI_GenBank
Match: gi|1173942599|gb|OQR91567.1| (tRNA pseudouridine synthase [Achlya hypogyna]) HSP 1 Score: 218.009 bits (554), Expect = 2.660e-60 Identity = 180/557 (32.32%), Postives = 251/557 (45.06%), Query Frame = 0
Query: 31 CIRCSLRLAGVCDAEILRAPERQLRATLCS--AQGAEISHATCRMCPLCLGILQSSGDRELGSALLDAILAQIKTKKYVLPTGGDSPDMTQHKSTTDPVGEMVAEHSKYLLERKVPFILGVSLPGSVAIRDRAALEWVACEQQTGRHQDPGRRLDVKEILKAVLESCLPKHYPCLYAASTPSPGALRVDLSFWHAGADEADYHQGVRILLPNATGKAFNRTRKRRRHEESNQENLCNATVVARVLQAATGDPNVRSGLAVFFARNLMPPSTHSPTAYAALETPAASSVQVTREAIFLAGRYLKLSREMPQTLWVVEGGRRKGKASVEEVVAEPVLDWTSATSAVLIGSGREDMDVRMLGTGRPFLLRVNDPRRIPGREEVAGLEAAINQTTGLNSGGDVRVHGLRLSDKHEVKAMHAGATEKVKMYSCRVWVGGRVDRALLATSLEGSKELVVAQKTPIRVLHRRALLTRPKVIHEMRCTDVKVVEGGEEGGEEGGEMAVGTYFTLHLRTSAGTYIKEFVHGDMGRTRPSVGDLLGGLEADLLALDVTGIVMEGEEG 585
CIRC LR AG+CD + P +L AT + AQ A+ + +C CL + D L A +A+ A + Y P+ F++ +P SV IR A L +V Q +D+KE+LK + P L A+ + + V + F H ++ +LLP R + + ++ V+R L SGL A PP+ A+++PA V V R +++AGRYLK R + QT WV++G R G +SVEE + + + A S +GRED+DVRMLG GRPF+L + D + E A + + V V L + K A+ +GA K K Y C VW G + A +AT L G +L VAQKTP+RVLHRR LLTRPKVIH+ R E+ Y L L TSAGTY+KEFVHGD+GRT P+V LL G +AD+L LDV ++ +G+ G
Sbjct: 29 CIRCCLRFAGLCDEALYLLPSSELEATWAAYGAQHAQAVTPSAPICTCCLNVF----DVLLAPAGREAVTATLAEAGYTTPS----------------------------------FVIATKIPSSVLIRQYAMLHFV---------QAKLTPVDLKEVLKWCIT---PIFAASLGGATYNAASDVSVHVHFTHPLSESE------AMLLPT--------LRDTIMQNKKRKLDIDGFGAVSRAL----------SGLRSLPAAIPSPPT--------AVQSPATLVVTVERSPVYVAGRYLKYQRGLSQTPWVLDG-ERMGDSSVEEAIGDVIAPEFRAKSYKFHTAGREDVDVRMLGNGRPFILELLDAKVATLSPEAF---ATVQNRVNAANLDVVEVRELTGATKEGFAALQSGADSKRKTYCCVVWTSGVLTPARVAT-LNGIVDLKVAQKTPVRVLHRRTLLTRPKVIHDARV-----------------EVLNDHYMLLRLTTSAGTYVKEFVHGDLGRTFPNVASLL-GCDADILQLDVENLI-DGQPG 479
BLAST of EWM22347.1 vs. NCBI_GenBank
Match: gi|514803213|ref|XP_004976495.1| (PREDICTED: putative tRNA pseudouridine synthase Pus10 [Setaria italica]) HSP 1 Score: 216.468 bits (550), Expect = 3.283e-59 Identity = 178/578 (30.80%), Postives = 265/578 (45.85%), Query Frame = 0
Query: 31 CIRCSLRLAGVCDA-------------EILRAPERQLRATLCSAQGAEISHATCRMCPLCLGILQSSGDRELGSALLDAILAQIKTKKYVLPTGGDSPDMTQHKSTTDPVGEMVAEHSKYLLERKVPFILGVSLPGSVAIRDRAALEWVACEQQTGRHQ------DPGRRLDVKEILKAVLESCLPKHYPCLYAASTPSPGALRVDLSFWHAGADEADYHQGVRILLPNATGKAFNRTRKRRRHEESNQENLCNATVVARVLQAATGDPNVRSGLAVFFARNL-----MPPSTHSPTAYAALETPAASSVQVTREAIFLAGRYLKLSREMPQTLWVVEGGRRKGKASVEEVVAEPVLDWTSATSAVLIGSGREDMDVRMLGTGRPFLLRVNDPRRIPGREEVAGLEAAINQTTGLNSGGDVRVHGLRLSDKHEVKAMHAGATEKVKMYSCRVWVGGRVDRALLATSLEG---SKELVVAQKTPIRVLHRRALLTRPKVIHEMRCTDVKVVEGGEEGGEEGGEMAVGTYFTLHLRTSAGTYIKEFVHGDMGRTRPSVGDLLGGLEADLLALDVTGIVME 581
C+RC LRL G + L + ++ CS A+ S+ C +CLG+L + RE G ++T GG D S + + ++V + S YL++ F L +SLP +A +RA ++ +Q+ G P + + VKE L+ ++ L K + + R+ L++ H A Q + LLPN G+ +T R + SN+ + N+T Q + D + L + L +PP + P + R I++ GRYLKLSR + Q+ W+++ R G+ASVEE++ E + S +GRED+DVRMLG+GRPFL+ + + R IP EV +E IN + VRV L+L M G +EK K Y+ +W R L L +K++ + QKTPIRVLHRR+ L R ++IH M VK Y+ LHL T AGTYIKEFVHGD+GRT PS+G + G A++L LDVT + M+
Sbjct: 33 CVRCILRLLGAYSSACSFASLTASVLHSFLEEHDNSIKGGSCSCLSADDSY-----CSVCLGVLLPAWHREEG----------VETSH-----GGFHID-----SISSMISQVVQKES-YLVDE---FSLEISLPPVIAANERAVRLYM--KQKFGNENWFKDKMFPQQIMSVKEALRLLMVPSLEKQ-----MNAKHDNCSFRIRLTYTHDDAS-----QKLHSLLPNEHGRK-RKTDSRNGSDTSNEAHKRNSTD-GNNKQISESDSFIYKTLEGIQDQELCNLIQLPPE--------KVSKPCHLVISCMRSPIYIGGRYLKLSRNVSQSCWIIDD-ERMGEASVEEIIGENIRVICRGDSCKFHAAGREDIDVRMLGSGRPFLVELLNVRSIPSEIEVQQIEDRINNS----EKKYVRVRNLKLVGNEIWTMMREGESEKQKQYTALIWTS----RELAENDLHNISVTKDMEIVQKTPIRVLHRRSPLERKRIIHWMEIEKVK---------------GSSNYYLLHLCTQAGTYIKEFVHGDLGRTHPSIGAIF-GCRAEILQLDVTDVKMD 534
BLAST of EWM22347.1 vs. NCBI_GenBank
Match: gi|673025686|ref|XP_008866804.1| (tRNA pseudouridine(54/55) synthase, variant 2 [Aphanomyces invadans] >gi|574478368|gb|ETW05364.1| tRNA pseudouridine(54/55) synthase, variant 2 [Aphanomyces invadans]) HSP 1 Score: 214.157 bits (544), Expect = 5.977e-59 Identity = 175/559 (31.31%), Postives = 251/559 (44.90%), Query Frame = 0
Query: 31 CIRCSLRLAGVCDAEILRAPERQLRAT---LCSAQGAEISHATCRM---CPLCLGILQSSGDRELGSALLDAILAQIKTKKYVLPTGGDSPDMTQHKSTTDPVGEMVAEHSKYLLERKVPFILGVSLPGSVAIRDRAALEWVACEQQTGRHQDPGRRLDVKEILKAVLESCLPKHYPCLYAASTPSPGALRVDLSFWHAGADEADYHQGVRILLPNATGKAFNRTRKRRRHEESNQENLCNATVVARVLQAATGDPNVRSGLAVFFARNLMP--PSTHSPTAYAALETPAASSVQVTREAIFLAGRYLKLSREMPQTLWVVEGGRRKGKASVEEVVAEPVLDWTSATSAVLIGSGREDMDVRMLGTGRPFLLRVNDPR--RIPGREEVAGLEAAINQTTGLNSGGDVRVHGLRLSDKHEVKAMHAGATEKVKMYSCRVWVGGRVDRALLATSLEGSKELVVAQKTPIRVLHRRALLTRPKVIHEMRCTDVKVVEGGEEGGEEGGEMAVGTYFTLHLRTSAGTYIKEFVHGDMGRTRPSVGDLLGGLEADLLALDVTGIV 579
C+RC LR A V D E+ +L AT +AQG + A + C CL + + + LG++ ++A+ K Y T F++ + +P + IR + V + P +D+KE+LK L L L A+ + + + L F +HE S QE + T+ ++Q + + AV A M PST P +TP + +V++ R ++AGRYLK R + QT WV++G R G++SVEE + + VL A S +GRED+DVRMLG GRPF+L + D + +P ++A +N+T + V + G +L+DK + AGA K K Y C VWV ++ +AT L +L VAQKTP+RVLHRR LLTRPKVIH T + Y L L TSAGTY+KEFVHGD+GRT P+V LL G +AD+L LDV +V
Sbjct: 28 CVRCILRYAAVTDHELYSLDSAELSATWDTFSAAQGQPVPDAPAAIAGVCTCCLDVFEGA----LGASNRADLVAKAKDCGYATTT----------------------------------FMIAIQIPSATLIRQHSLSHHV---------KFPSTPIDLKEVLKWCLTPILAT---ALNNATYVATSDVSIHLHF---------------------------------QHELSEQEAMQVPTIRDTIMQNKRRKLEIDAFGAVTRALQSMHDFPST-MPCPPTVAKTPCSLTVKMERAPTYVAGRYLKYQRGLSQTPWVLDG-ERLGESSVEEAIGDIVLPHFHAKSYKFHTAGREDVDVRMLGNGRPFILELIDAKVAALPSPAHYERIQAEVNET----NADRVEIRGFQLTDKKRFSVLQAGADSKRKTYCCVVWVAEKLTPDRVAT-LNSISDLAVAQKTPVRVLHRRTLLTRPKVIHSANVTVLN-----------------DHYMLLRLTTSAGTYVKEFVHGDLGRTLPNVSTLL-GCDADILQLDVEDLV 478
BLAST of EWM22347.1 vs. NCBI_GenBank
Match: gi|971541324|ref|XP_015161917.1| (PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Solanum tuberosum]) HSP 1 Score: 214.157 bits (544), Expect = 3.776e-58 Identity = 184/593 (31.03%), Postives = 262/593 (44.18%), Query Frame = 0
Query: 14 EDTWSLPAFSLLYPKINCIRCSLRLAGV---------------CDAEILRAPERQLRATLCSAQGAEISHATCRMCPLCLGILQSSGDRELGSALLDAILAQIKTKKYVLPTGGDSPDMTQHKSTTDPVGEMVAEHSKYLLERKVPFILGVSLPGSVAIRDRAALEWVACEQQTGRHQ------DPGRRLDVKEILKAVLESCLPKHYPCLYAASTPSPGALRVDLSFWHAGA----DEADYHQGVRILLPNATGKAFNRTRKRRRHEESNQENLCNATVVARVLQAATGDPNVRSGLAVFFARNLMPPSTHSPTAYAALETPAASSVQVTREAIFLAGRYLKLSREMPQTLWVVEGGRRKGKASVEEVVAEPVLDWTSATSAVLIGSGREDMDVRMLGTGRPFLLRVNDPRRIPGREEVAGLEAAINQTTGLNSGGDVRVHGLRLSDKHEVKAMHAGATEKVKMYSCRVWVGGRVDRALLATSLEGSKELVVAQKTPIRVLHRRALLTRPKVIHEMRCTDVKVVEGGEEGGEEGGEMAVGTYFTLHLRTSAGTYIKEFVHGDMGRTRPSVGDLLGGLEADLLALDVTGIVME 581
+D WS+ A C+RC RL G+ CD IL R+ E S T C +CLGILQ + G+ L KKY + D +++E K ++ F L VSLP SV D+A W+ + + RH+ + + K+ILK ++ + L + S + RV L++ H+ A D D + G + TG H ES+ ++ + + +V + D + NLM + P ++ R + ++ GRYLK SR + QT WV++ R G+ASVEE++ +L + +GRED+DVRMLGTGRPFL+ + + R++P + +E IN VRV LR M G EK K Y+ VW+ V L T + KEL VAQKTPIRVLHRR+ L R K+IH M+ + V G + YF LHL T AGTYIKEFVHGD GRT+PS+G +L G ++L LDVT + M+
Sbjct: 44 KDLWSIGA---------CVRCIFRLFGLHELMCSHPSLSISKWCD--ILEDVMRKKDGEFNEQSHQERSRET-NFCKICLGILQFLYYDDTGTLL----------KKY----------------SADDFAVVISELVKQQYQQIDSFSLEVSLPSSVTENDQAV--WLYMKNKF-RHELWFQEKAECQFISTKDILKLLVINPLQR-----LLGVKSSQSSFRVRLTYSHSDALTRDDVQDGNGGNKRRKTGFTGDLKTTGESVTPHVESSDNHIVDGDGLTKVCPKESQDLS---------CNNLMAQ-------LDKVGKPCCLTIHCCRSSTYIGGRYLKYSRNVSQTRWVIDD-ERMGEASVEEIIGGAILPIFQGDNYKFHAAGREDIDVRMLGTGRPFLVEIQNARQVPSEALIKEIERKINSL----ESHYVRVKNLRAVGIQGWDLMREGEAEKQKQYAALVWISRPVSDEDLQT-ISSLKELKVAQKTPIRVLHRRSPLEREKIIHWMQ---AERVSGSSQ------------YFLLHLCTQAGTYIKEFVHGDFGRTQPSIGSIL-GCRTEILQLDVTDVKMD 552
BLAST of EWM22347.1 vs. NCBI_GenBank
Match: gi|699669664|ref|XP_009884377.1| (PREDICTED: putative tRNA pseudouridine synthase Pus10 [Charadrius vociferus]) HSP 1 Score: 213.001 bits (541), Expect = 4.724e-58 Identity = 174/575 (30.26%), Postives = 260/575 (45.22%), Query Frame = 0
Query: 20 PAFSLLYPKINCIRCSLRLAGVCDAEILRAPERQL----RATLCSAQGAEISHATCRMCPLCLGILQSSGDRELGSALLDAILAQIKT--------KKYVLPTGGDSPDMTQHKSTTDPVGEMVAEHSKYLLERKVPFILGVSLPGSVAIRDRAALEWVACEQQTGRHQDPGRRLDV---KEILKAVLESCLPKHYPCLYAASTPSPGALRVDLSFWHAGADEADYHQGVRILLPNATGKAFNRTRKRRRHEESNQENLCNATVVARVLQAATGDPNVRSGLAVFFARNLMPPSTHSPTAYAALETPAASSVQVTREAIFLAGRYLKLSREMPQTLWVVEGGRRKGKASVEEVVAEPVLDWTSATSAVLIGSGREDMDVRMLGTGRPFLLRVNDPRRIPGR-EEVAGLEAAINQTTGLNSGGDVRVHGLRLSDKHEVKAMHAGATEKVKMYSCRVWVGGRVDRALLATSLEGSKELVVAQKTPIRVLHRRALLTRPKVIHEMRCTDVKVVEGGEEGGEEGGEMAVGTYFTLHLRTSAGTYIKEFVHGDMGRTRPSVGDLLGGLEADLLALDVTGI 578
P LL C RC LR V + R P + L + L + Q E + + + P C I +++ + L QI + + V+ + Q D V + V + + F+ VSLP +++R+RAA W+ +Q+ G+ + D+ KE K ++ L + L+ S + F H DE + L A F + N++++ V + L+ D F ++ P + ALE +Q A+F+AGRY K SR +PQT W+++G RK ++SVEE+++E ++ A S SGRED+DVR LG GRPF + + +PRRI EE+ GL+ IN NS ++V L+L + + M G EK K YS +W + + +A L+ KEL + QKTP+RVLHRR L R ++IH M+ E +F LHL+T AGTYIKEFVHGD GRT+PS+G LL AD+L LDV +
Sbjct: 10 PIVQLLLNTGTCPRCILRFCCVGSQTLYRCPYKDLMKDLKEFLKNNQEKEDTVCSDVVDPPCKRIRLEHTEKQPDDLNHNGALQQIPSVINENTAVENSVIEVCNVCLGILQEFCEIDFVKK-VCQKVNSADYQFTSFVFSVSLPPQLSVRERAA--WLLVKQEMGKLGLSLAKDDIVQLKEAYKWIIHPQLSEELGSLFEVS----------VVFAHPETDEECH------FLATACPDCFKPAK--------NKQSVFTRMAVIKALEKIKEDD---------FLKHFPCPPSSPKNLCVALE------IQCNNGAVFVAGRYNKYSRNLPQTPWIIDG-ERKLESSVEELISEHLMAKFKADSFNFSSSGREDVDVRTLGNGRPFAIELVNPRRIHFTAEEMKGLQQTIN-----NSSDKIQVRDLQLVTREAIGRMKEGEEEKTKTYSALIWTDKAIRKEDIAF-LDDIKELKLDQKTPLRVLHRRPLAVRCRIIHTMK-----------------SEYIDEHHFRLHLKTQAGTYIKEFVHGDFGRTKPSIGSLLNRT-ADILELDVESV 517
BLAST of EWM22347.1 vs. NCBI_GenBank
Match: gi|543264914|ref|XP_005422688.1| (PREDICTED: putative tRNA pseudouridine synthase Pus10 [Geospiza fortis]) HSP 1 Score: 213.001 bits (541), Expect = 5.157e-58 Identity = 155/438 (35.39%), Postives = 217/438 (49.54%), Query Frame = 0
Query: 145 FILGVSLPGSVAIRDRAALEWVACEQQTGRHQDPGRRLDVKEILKAVLESCLPKHYPCLYAASTPSPGA--LRVDLSFWHAGADEADYHQGVRILLPNATGKAFNRTRKRRRHEESNQENLCNATVVARVLQAATGDPNVRSGLAVFFARNLMPPSTHSPTAYA-ALETPAASSVQVTREAIFLAGRYLKLSREMPQTLWVVEGGRRKGKASVEEVVAEPVLDWTSATSAVLIGSGREDMDVRMLGTGRPFLLRVNDPRRIP-GREEVAGLEAAINQTTGLNSGGDVRVHGLRLSDKHEVKAMHAGATEKVKMYSCRVWVGGRVDRALLATSLEGSKELVVAQKTPIRVLHRRALLTRPKVIHEMRCTDVKVVEGGEEGGEEGGEMAVGTYFTLHLRTSAGTYIKEFVHGDMGRTRPSVGDLLGGLEADLLALDVTGI 578
F+ VSLP +++R+RAA W+ +QQ P + D+ ++ +A P+ A PS G V + F H DE + L A F + N++++ V + L+ R F PPS SP ALE +Q A+F+AGRY K SR +PQT W+++ G RK ++SVEE+++E ++ A S SGRED+DVR LG GRPF + + +PRRI EE+ L+ AIN +S ++V L+L + + M G EK K YS +W + R +A L+ KEL + QKTP+RVLHRR L R ++IH MR E +F LHLRT AGTYIKEFVHGD GRT+P++G LL AD+L LDV +
Sbjct: 150 FVFSVSLPPQLSVRERAA--WLGVKQQMRNLGLPLAKDDIVQLKEAYKWIIHPQ------LAEDPSDGKSLFEVSVVFAHPETDEECH------FLATACPDCFKPAK--------NKQSVFTRMAVIKALE--------RIKEEDFLKHFPCPPS--SPKNLCDALE------IQCNNGAVFVAGRYNKYSRNLPQTPWIID-GERKLESSVEELISEHLMAEFKADSFNFSSSGREDVDVRTLGNGRPFAMELVNPRRIHFSAEEMKRLQQAIN-----DSSDKIQVRDLQLVTREAIGRMKEGEEEKTKTYSALIWTDKAIQREDIAF-LDDIKELRLEQKTPLRVLHRRPLAVRCRLIHSMR-----------------SEYIDQHHFRLHLRTQAGTYIKEFVHGDFGRTKPNIGSLLNRT-ADILELDVESV 524
BLAST of EWM22347.1 vs. NCBI_GenBank
Match: gi|960952931|ref|XP_014821859.1| (PREDICTED: putative tRNA pseudouridine synthase Pus10 [Calidris pugnax] >gi|960952933|ref|XP_014821860.1| PREDICTED: putative tRNA pseudouridine synthase Pus10 [Calidris pugnax] >gi|960952935|ref|XP_014821861.1| PREDICTED: putative tRNA pseudouridine synthase Pus10 [Calidris pugnax]) HSP 1 Score: 212.616 bits (540), Expect = 7.309e-58 Identity = 151/440 (34.32%), Postives = 217/440 (49.32%), Query Frame = 0
Query: 145 FILGVSLPGSVAIRDRAALEWVACEQQTGRHQDPGRRLDV---KEILKAVLESCLPKHYPCLYAASTPSPGA--LRVDLSFWHAGADEADYHQGVRILLPNATGKAFNRTRKRRRHEESNQENLCNATVVARVLQAATGDPNVRSGLAVFFARNLMPPSTHSPTAYAALETPAASSVQVTREAIFLAGRYLKLSREMPQTLWVVEGGRRKGKASVEEVVAEPVLDWTSATSAVLIGSGREDMDVRMLGTGRPFLLRVNDPRRIPGR-EEVAGLEAAINQTTGLNSGGDVRVHGLRLSDKHEVKAMHAGATEKVKMYSCRVWVGGRVDRALLATSLEGSKELVVAQKTPIRVLHRRALLTRPKVIHEMRCTDVKVVEGGEEGGEEGGEMAVGTYFTLHLRTSAGTYIKEFVHGDMGRTRPSVGDLLGGLEADLLALDVTGI 578
F+ VSLP +++R+RAA W+ +Q+TG+ + D+ KE K ++ L + P+ G V + F H DE L A F + N++++ V + L+ + F PPS SP + A +Q A+F+AGRY K SR +PQT W+++G RK ++SVEE+++E ++ A S SGRED+DVR LG GRPF + + +PRRI EE+ GL+ IN NS ++V L+L + + M G EK K YS +W + R + T L+ KEL + QKTP+RVLHRR L R ++IH M+ E +F LHL+T AGTYIKEFVHGD GRT+P++G LL AD+L LDV +
Sbjct: 146 FVFSVSLPPQLSVRERAA--WLLVKQETGKLGLSLAKEDIVQLKEAYKWIIHPQLSEEL------GVPADGKSLFEVSVVFAHPETDEECR------FLATACPDCFKPAK--------NKQSVFTRMAVIKALEKIKEED--------FLKHFPCPPS--SPKNLSV-----ALEIQCNNGAVFVAGRYNKYSRNLPQTPWIIDG-ERKLESSVEELISEHLMAEFKADSFNFSSSGREDVDVRTLGNGRPFAIELVNPRRIHFTAEEMKGLQQTIN-----NSSDKIQVRDLQLVTREAIGRMKEGEEEKTKTYSALIWTDKAIQREDI-TFLDDIKELKLDQKTPLRVLHRRPLAVRCRIIHTMK-----------------SEYIDEHHFRLHLKTQAGTYIKEFVHGDFGRTKPNIGSLLNRT-ADILELDVESV 523
BLAST of EWM22347.1 vs. NCBI_GenBank
Match: gi|697457786|gb|KGL94142.1| (Putative tRNA pseudouridine synthase Pus10, partial [Charadrius vociferus]) HSP 1 Score: 212.231 bits (539), Expect = 8.450e-58 Identity = 175/575 (30.43%), Postives = 260/575 (45.22%), Query Frame = 0
Query: 20 PAFSLLYPKINCIRCSLRLAGVCDAEILRAPERQL----RATLCSAQGAEISHATCRMCPLCLGILQSSGDRELGSALLDAILAQIKT--------KKYVLPTGGDSPDMTQHKSTTDPVGEMVAEHSKYLLERKVPFILGVSLPGSVAIRDRAALEWVACEQQTGRHQDPGRRLDV---KEILKAVLESCLPKHYPCLYAASTPSPGALRVDLSFWHAGADEADYHQGVRILLPNATGKAFNRTRKRRRHEESNQENLCNATVVARVLQAATGDPNVRSGLAVFFARNLMPPSTHSPTAYAALETPAASSVQVTREAIFLAGRYLKLSREMPQTLWVVEGGRRKGKASVEEVVAEPVLDWTSATSAVLIGSGREDMDVRMLGTGRPFLLRVNDPRRIPGR-EEVAGLEAAINQTTGLNSGGDVRVHGLRLSDKHEVKAMHAGATEKVKMYSCRVWVGGRVDRALLATSLEGSKELVVAQKTPIRVLHRRALLTRPKVIHEMRCTDVKVVEGGEEGGEEGGEMAVGTYFTLHLRTSAGTYIKEFVHGDMGRTRPSVGDLLGGLEADLLALDVTGI 578
P LL C RC LR V + R P + L + L + Q E + + + P C I +++ + L QI + + V+ + Q D V + V + + F+ VSLP +++R+RAA W+ +Q+ G+ + D+ KE K ++ +P L S V + F H DE + L A F + N++++ V + L+ D F ++ P + ALE +Q A+F+AGRY K SR +PQT W+++G RK ++SVEE+++E ++ A S SGRED+DVR LG GRPF + + +PRRI EE+ GL+ IN NS ++V L+L + + M G EK K YS +W + + +A L+ KEL + QKTP+RVLHRR L R ++IH M+ E +F LHL+T AGTYIKEFVHGD GRT+PS+G LL AD+L LDV +
Sbjct: 10 PIVQLLLNTGTCPRCILRFCCVGSQTLYRCPYKDLMKDLKEFLKNNQEKEDTVCSDVVDPPCKRIRLEHTEKQPDDLNHNGALQQIPSVINENTAVENSVIEVCNVCLGILQEFCEIDFVKK-VCQKVNSADYQFTSFVFSVSLPPQLSVRERAA--WLLVKQEMGKLGLSLAKDDIVQLKEAYKWII-------HPQL------SEDLFEVSVVFAHPETDEECH------FLATACPDCFKPAK--------NKQSVFTRMAVIKALEKIKEDD---------FLKHFPCPPSSPKNLCVALE------IQCNNGAVFVAGRYNKYSRNLPQTPWIIDG-ERKLESSVEELISEHLMAKFKADSFNFSSSGREDVDVRTLGNGRPFAIELVNPRRIHFTAEEMKGLQQTIN-----NSSDKIQVRDLQLVTREAIGRMKEGEEEKTKTYSALIWTDKAIRKEDIAF-LDDIKELKLDQKTPLRVLHRRPLAVRCRIIHTMK-----------------SEYIDEHHFRLHLKTQAGTYIKEFVHGDFGRTKPSIGSLLNRT-ADILELDVESV 514
BLAST of EWM22347.1 vs. NCBI_GenBank
Match: gi|698412341|ref|XP_009811615.1| (PREDICTED: LOW QUALITY PROTEIN: putative tRNA pseudouridine synthase Pus10 [Gavia stellata]) HSP 1 Score: 212.616 bits (540), Expect = 8.982e-58 Identity = 147/435 (33.79%), Postives = 215/435 (49.43%), Query Frame = 0
Query: 145 FILGVSLPGSVAIRDRAALEWVACEQQTGRHQDPGRRLDVKEILKAVLESCLPKHYPCLYAASTPSPGALRVDLSFWHAGADEADYHQGVRILLPNATGKAFNRTRKRRRHEESNQENLCNATVVARVLQAATGDPNVRSGLAVFFARNLMPPSTHSPTAYAALETPAASSVQVTREAIFLAGRYLKLSREMPQTLWVVEGGRRKGKASVEEVVAEPVLDWTSATSAVLIGSGREDMDVRMLGTGRPFLLRVNDPRRIPGR-EEVAGLEAAINQTTGLNSGGDVRVHGLRLSDKHEVKAMHAGATEKVKMYSCRVWVGGRVDRALLATSLEGSKELVVAQKTPIRVLHRRALLTRPKVIHEMRCTDVKVVEGGEEGGEEGGEMAVGTYFTLHLRTSAGTYIKEFVHGDMGRTRPSVGDLLGGLEADLLALDVTGI 578
F+ VSLP +++R+RAA W+ +Q+TG+ + D+ ++ +A P+ V + F H DE + L A F + N++++ V + L+ + F PPS SP + A +Q A+F+AGRY K SR +PQT W+++G RK ++SVEE+++E ++ A S SGRED+DVR LG GRPF + + +PRRI EE+ GL+ IN NS ++V L+L + + M G EK K YS +W + + +A L+G KEL + QKTP+RVLHRR L R ++IH M+ E +F LHL+T AGTYIKEFVHGD GRT+P++G LL AD+L LDV +
Sbjct: 146 FVFSVSLPPQLSVRERAA--WLLIKQETGKLGLSLAKDDIVQLKEAYKWIIHPQLSEEXXXXXWKGVSLFEVSVVFAHPETDEECH------FLATACPDCFKPAK--------NKQSVFTRMAVIKALEKIKEED--------FLKHFPCPPS--SP-----MNLCVALEIQCNNGAVFVAGRYNKYSRNLPQTPWIIDG-ERKLESSVEELISEHLMAEFKADSFNFSSSGREDVDVRTLGNGRPFAIELVNPRRIHFTAEEMKGLQQTIN-----NSSDKIQVRDLQLVTREAIGRMKEGEEEKTKTYSALIWTDKAIQKEDIAF-LDGIKELKLDQKTPLRVLHRRPLAVRCRIIHTMQ-----------------SEYIDEHHFRLHLKTQAGTYIKEFVHGDFGRTKPNIGSLLNRT-ADILELDVESV 524 The following BLAST results are available for this feature:
BLAST of EWM22347.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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