rna8338, rna8338 (mRNA) Nannochloropsis gaditana

Overview
Namerna8338
Unique Namerna8338
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1482
Alignment locationKK037248.1:418345..419091 +

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Properties
Property NameValue
Productsignal recognition particle protein
Orig transcript idgnl|cribi|Naga_100066g27.10327.mrna
Orig protein idgnl|cribi|Naga_100066g27.10327
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:418345..419091 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100066g27gene8077Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8338rna8338-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22370.1cds8311Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8338 ID=rna8338|Name=rna8338|organism=Nannochloropsis gaditana|type=mRNA|length=1482bp
ATGAAACCAGTAGATCATATTCGCGCATTTTTGTCCCGTAGTCCAGCTCC
TCGAACACTCCTGATCCTATTCTCATCGCTTGTTGGTGGGGTTGTGGCAA
GAGTGTTTCTCAAGCACTTTCGTTCCTTGGCGTTGCCTGCCTCACTGCGA
TGTCTTTTGAGAGGGAATCGAGGGGGAGAGAGATTGCCACCTGAGGTAGC
TGAACGAATCATTGCCCACATGAATAAAGACCACGGAGCCCAACTCGTCC
TATACGCAAAGCATTACGCTGGTCTCGCCTCGACCATCGCGGCCACCCTG
ACCTACATAGATTCGACTGGTGTCGAACTTTCGGTCACGCTCAGCTCATC
CAATGCTCCACGTCGGGTCTATATCGCGTTTCCACACGGATCTCTTCCGT
CAGTCCACGATGCACGAGCGGTATTGGTGGCGATGGCTGAAACAGCCGCG
CAGGCCCTGGGCTCCGAGGTGAAAGCGGGCGAATCGGACGAGAATAAGTC
AGATCCCTTGACGGACACCGAACACGGCTTTGCCCGCGCAGAAATGGGCA
GCAAGAAATGCCTGGCAGGTACAGTGAAGAAGTACGACACGCACATGTTT
GTCTTGTGGAAACGGGCGCAGGAATGGCCCAAGCACGTTGAGGCGGGCGC
CGCGGGAAATGACCCGCCCACGCTCCCCCAAGCGCTCCATGCCGCTCTCA
AGGATTGTGCCGGCTCGATCTCCTGTGGAACAGTGAAGTTGAACGTGGCA
GAATGCAGGGATGGGTCGGAGGACAAGGACGGGACCCTCTTGCTCTTCCC
TCAGGAGCTTTGCGTGACGGGGGTGACTGAGGCCAATGCGAAGGCCGTGG
TGGAGGCGTTGTTGGCGGGCGAGGTGGAGGAAGGGGAGGACGGACGGTGG
GGGAACCGCACAAGGGTGGCGGCTGAGAAGGTCGGGCGTCTGAAGGGGGT
GGCGGTGAAAAGCCTTCCGGGCCAGCATCTCTTTGTCTGCTGCCATGGGA
ACCGGGACAAGCGCCACCCGTCCTCCGCCTCCCATCCCGCCCCTCACGCC
TTCTACGACGCGGACGCGCTTTTTCGCCTTCCCCCGGAGGTGGTTCGGGG
ATTTTCGGCCCTTTTGGCCTCCCCCGAAGCCGACCCCACGGTCGCCTACT
ACGCCGTCATCGACGGGAATGTGCTTGCCATGTGCCTCGGAGCCTCCACG
CCCTTTCCTCCTTCCCACCTTCCCTCCTTGGCGCGGACCCGGGCCTTGCT
GGTCCGAGTCCAAGGGGACAGTCGGAAGGAGAGGGAGGTGGTGTACGCGT
ATGCCACCGTCTTCCGCACCCTGGAGGAGTATCACCGCGAACGTGAGGGC
CGCTGCTGCTTGTGTCTGCCGCCCTGCCGGCATGCTCTCCACCGGTGGTG
TTGTGAGAGGAGGATGAGAAAGGAGACCTTGCGGGTGGTGGAGGGGGCCT
TTAGGACCATGAAGCGGGAGCTGGGGGCGTGA
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protein sequence of rna8338

>rna8338-protein ID=rna8338-protein|Name=rna8338|organism=Nannochloropsis gaditana|type=polypeptide|length=248bp
MLSRDVCPMLKHVCPSTFSSTQASHILVTQRQGRHMSLMLSFRCNIRTSL
LFNRPHLSTQLATAPSLVRHSTVWRVVQNAIQERRASKEEEQFQAELARL
ASMTRYDLRNFKEAVDKPGNSWFSWVNKVPGVRSMPEVQVGERYRKILGA
FTEEELAHPEKIKSREKQRVATQSGESIQEINLLLSLYENSQALHKWVRR
RVADKKEMPKTQSECQVLMMGDPAGVSVGAMQQKQQKRALKKGNRLPF
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mRNA from alignment at KK037248.1:418345..419091+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8338 ID=rna8338|Name=rna8338|organism=Nannochloropsis gaditana|type=mRNA|length=747bp|location=Sequence derived from alignment at KK037248.1:418345..419091+ (Nannochloropsis gaditana)
ATGCTGAGCAGGGATGTATGTCCGATGCTGAAACATGTGTGTCCATCCAC
ATTCTCCTCAACGCAGGCTTCGCATATTCTCGTCACGCAACGACAGGGGC
GTCATATGAGTCTCATGCTATCCTTCCGGTGCAACATACGCACGTCGCTG
CTTTTCAATCGACCACACCTTTCGACACAGCTTGCGACGGCTCCGTCACT
TGTGCGCCATTCCACCGTGTGGCGCGTAGTGCAGAATGCGATTCAAGAAC
GGCGGGCctcgaaggaagaggagcaatTTCAGGCAGAACTGGCAAGACTA
GCGAGCATGACGCGCTACGATTTGCGTAATTTCAAAGAGGCAGTGGATAA
ACCGGGGAATTCGTGGTTTTCCTGGGTCAACAAAGTACCGGGAGTTCGGA
GCATGCCAGAAGTGCAGGTGGGGGAGCGGTACAGGAAGATCCTAGGCGCg
ttcacggaggaggagttggcCCACCCTGAGAAGATCAAGTCGAGGGAGAA
GCAACGTGTGGCCACACAGAGTGGTGAGTCGATCCAAGAAATCAATTTGC
TCCTTAGCTTGTACGAAAACTCTCAGGCCTTGCACAAGTGGGTACGTCGG
CGGGTggcggacaagaaggaaatgccCAAGACGCAGAGTGAGTGCCAAGT
ACTGATGATGGGGGATCCGGCGGGCGTATCTGTGGGAGCCATGCAGCAGA
AACAACAGAAAAGGGCGTTGAAGAAAGGAAACCGGTTGCCATTTTAA
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Coding sequence (CDS) from alignment at KK037248.1:418345..419091+

>rna8338 ID=rna8338|Name=rna8338|organism=Nannochloropsis gaditana|type=CDS|length=747bp|location=Sequence derived from alignment at KK037248.1:418345..419091+ (Nannochloropsis gaditana)
ATGCTGAGCAGGGATGTATGTCCGATGCTGAAACATGTGTGTCCATCCAC
ATTCTCCTCAACGCAGGCTTCGCATATTCTCGTCACGCAACGACAGGGGC
GTCATATGAGTCTCATGCTATCCTTCCGGTGCAACATACGCACGTCGCTG
CTTTTCAATCGACCACACCTTTCGACACAGCTTGCGACGGCTCCGTCACT
TGTGCGCCATTCCACCGTGTGGCGCGTAGTGCAGAATGCGATTCAAGAAC
GGCGGGCctcgaaggaagaggagcaatTTCAGGCAGAACTGGCAAGACTA
GCGAGCATGACGCGCTACGATTTGCGTAATTTCAAAGAGGCAGTGGATAA
ACCGGGGAATTCGTGGTTTTCCTGGGTCAACAAAGTACCGGGAGTTCGGA
GCATGCCAGAAGTGCAGGTGGGGGAGCGGTACAGGAAGATCCTAGGCGCg
ttcacggaggaggagttggcCCACCCTGAGAAGATCAAGTCGAGGGAGAA
GCAACGTGTGGCCACACAGAGTGGTGAGTCGATCCAAGAAATCAATTTGC
TCCTTAGCTTGTACGAAAACTCTCAGGCCTTGCACAAGTGGGTACGTCGG
CGGGTggcggacaagaaggaaatgccCAAGACGCAGAGTGAGTGCCAAGT
ACTGATGATGGGGGATCCGGCGGGCGTATCTGTGGGAGCCATGCAGCAGA
AACAACAGAAAAGGGCGTTGAAGAAAGGAAACCGGTTGCCATTTTAA
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Synonyms
Publications