EWM22370.1, cds8311 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22370.1 vs. NCBI_GenBank
Match: gi|585102871|gb|EWM22370.1| (signal recognition particle protein [Nannochloropsis gaditana]) HSP 1 Score: 515.768 bits (1327), Expect = 0.000e+0 Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0
Query: 1 MLSRDVCPMLKHVCPSTFSSTQASHILVTQRQGRHMSLMLSFRCNIRTSLLFNRPHLSTQLATAPSLVRHSTVWRVVQNAIQERRASKEEEQFQAELARLASMTRYDLRNFKEAVDKPGNSWFSWVNKVPGVRSMPEVQVGERYRKILGAFTEEELAHPEKIKSREKQRVATQSGESIQEINLLLSLYENSQALHKWVRRRVADKKEMPKTQSECQVLMMGDPAGVSVGAMQQKQQKRALKKGNRLPF 248
MLSRDVCPMLKHVCPSTFSSTQASHILVTQRQGRHMSLMLSFRCNIRTSLLFNRPHLSTQLATAPSLVRHSTVWRVVQNAIQERRASKEEEQFQAELARLASMTRYDLRNFKEAVDKPGNSWFSWVNKVPGVRSMPEVQVGERYRKILGAFTEEELAHPEKIKSREKQRVATQSGESIQEINLLLSLYENSQALHKWVRRRVADKKEMPKTQSECQVLMMGDPAGVSVGAMQQKQQKRALKKGNRLPF
Sbjct: 1 MLSRDVCPMLKHVCPSTFSSTQASHILVTQRQGRHMSLMLSFRCNIRTSLLFNRPHLSTQLATAPSLVRHSTVWRVVQNAIQERRASKEEEQFQAELARLASMTRYDLRNFKEAVDKPGNSWFSWVNKVPGVRSMPEVQVGERYRKILGAFTEEELAHPEKIKSREKQRVATQSGESIQEINLLLSLYENSQALHKWVRRRVADKKEMPKTQSECQVLMMGDPAGVSVGAMQQKQQKRALKKGNRLPF 248
BLAST of EWM22370.1 vs. NCBI_GenBank
Match: gi|1032148382|gb|OAO12629.1| (signal recognition particle protein [Blastocystis sp. ATCC 50177/Nand II]) HSP 1 Score: 87.4261 bits (215), Expect = 2.833e-17 Identity = 55/198 (27.78%), Postives = 104/198 (52.53%), Query Frame = 0
Query: 44 CNIRTSLLFNRPHLSTQLATAPSLVRH------STVWRVVQNAIQERRASKEEEQFQAELARLASMTRYDLRNFKEAV----DKPGNSWFSWVNKVPGVRSMPEVQVGERYRKILGAFTEEELAHPEKIKSREKQRVATQSGESIQEINLLLSLYENSQALHKWVRRRVADKKEMPKTQSECQVLMMGDPAGVSVGAM 231
C ++L P Q ++PS V S++ + N +E++ +E F+ L +LAS + ++ +KE +K G + W + +PGV M EV+ ++Y IL A T +LA P+ IKS ++Q++A + +++ +N +L +Y+ ++KWV R + K +P T +E + +M D +G+++ M
Sbjct: 10 CKRASALSLRLPSALAQ--SSPSFVPQRSFGVFSSIKENLANRAEEKKQKTMDEGFKEMLQKLASYDTFSMKEYKEVFIWLSEKSGAN--GWKSHIPGVGKMEEVKEMKKYVSILNAMTPLQLAKPQTIKSPDRQKLAQDTKLTVEYVNKVLRMYDQQLVMYKWVHMRKQNSKPIPTTVAEMKDMMSRDHSGITMKDM 203
BLAST of EWM22370.1 vs. NCBI_GenBank
Match: gi|950897743|ref|XP_014529406.1| (glycoside hydrolase [Blastocystis sp. subtype 4] >gi|902864017|gb|KNB45963.1| glycoside hydrolase [Blastocystis sp. subtype 4]) HSP 1 Score: 87.8113 bits (216), Expect = 4.407e-16 Identity = 52/182 (28.57%), Postives = 98/182 (53.85%), Query Frame = 0
Query: 63 TAPSLVRH-------STVWRVVQNAIQERRASKEEEQFQAELARLASMTRYDLRNFKEAV----DKPGNSWFSWVNKVPGVRSMPEVQVGERYRKILGAFTEEELAHPEKIKSREKQRVATQSGESIQEINLLLSLYENSQALHKWVRRRVADKKEMPKTQSECQVLMMGDPAGVSVGAMQQ 233
TAP LV S++ V ++E++ ++ F+ + R AS Y ++ +K+ DK G + W + +PGV M EVQ ++Y IL A T +LA P+ IK+ ++ ++A + +++ +N +L +Y+ ++KWV R + K +P+T SE + +M D +G+++ M +
Sbjct: 635 TAPFLVTQQRSFGILSSIRDNVNEKMEEKKQKTADKGFKELMERFASYDTYGMKEYKDTFIWLADKSGAN--GWKSHIPGVGKMEEVQEMKKYVSILEAMTPLQLAKPQTIKAPDRIKLAEDTKLTVEYVNKVLRMYDQQFVMYKWVHLRKENNKPIPETMSEMKDMMSRDHSGITMKDMMK 814
BLAST of EWM22370.1 vs. NCBI_GenBank
Match: gi|675168511|ref|XP_008893140.1| (hypothetical protein PPTG_01561 [Phytophthora parasitica INRA-310] >gi|566022440|gb|ETI45351.1| hypothetical protein F443_10078 [Phytophthora parasitica P1569] >gi|567959706|gb|ETK85274.1| hypothetical protein L915_09872 [Phytophthora parasitica] >gi|567988423|gb|ETL38701.1| hypothetical protein L916_09781 [Phytophthora parasitica] >gi|568017645|gb|ETL91822.1| hypothetical protein L917_09699 [Phytophthora parasitica] >gi|568048077|gb|ETM45144.1| hypothetical protein L914_09748 [Phytophthora parasitica] >gi|568106709|gb|ETN21339.1| hypothetical protein PPTG_01561 [Phytophthora parasitica INRA-310] >gi|570949910|gb|ETP15167.1| hypothetical protein F441_10021 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 81.2629 bits (199), Expect = 4.227e-15 Identity = 49/174 (28.16%), Postives = 90/174 (51.72%), Query Frame = 0
Query: 66 SLVRHSTVWRVVQNAIQERRASKEEEQFQAELARLASMTRYDLRNFKEAVDKPGNSWFS--WVNKVPGVRSMPEVQVGERYRKILGAFTEEELAHPEKIKSREKQRVATQSGESIQEINLLLSLYENSQALHKWVRRRVADKKEMPKTQSECQVLMMGDPAGVSVGAMQQKQQK 237
S+ S + + V ++ER K+EE ++ ++ L+ ++DL F + + K + + W + +PGV SM VQ + + IL + E +P I + K++++ ++G S ++IN +L YE ALH W+ +RV +P+T E L+ DP G + KQ++
Sbjct: 43 SMSVFSNIKKTVSGKLEERNQHKQEEAYKQQMIELSQKDKFDLNGFYDHLKKNAEASGASGWRSMIPGVSSMTAVQQMKTFMAILESMEPEYRENPRLINGKIKRKISEKAGHSPEDINNMLRNYEQLSALHIWLVKRVERGLSIPETLDETTELVRQDPTGFPARKFRMKQRR 216
BLAST of EWM22370.1 vs. NCBI_GenBank
Match: gi|570983343|gb|ETP43192.1| (hypothetical protein F442_09990 [Phytophthora parasitica P10297]) HSP 1 Score: 81.2629 bits (199), Expect = 4.359e-15 Identity = 49/174 (28.16%), Postives = 90/174 (51.72%), Query Frame = 0
Query: 66 SLVRHSTVWRVVQNAIQERRASKEEEQFQAELARLASMTRYDLRNFKEAVDKPGNSWFS--WVNKVPGVRSMPEVQVGERYRKILGAFTEEELAHPEKIKSREKQRVATQSGESIQEINLLLSLYENSQALHKWVRRRVADKKEMPKTQSECQVLMMGDPAGVSVGAMQQKQQK 237
S+ S + + V ++ER K+EE ++ ++ L+ ++DL F + + K + + W + +PGV SM VQ + + IL + E +P I + K++++ ++G S ++IN +L YE ALH W+ +RV +P+T E L+ DP G + KQ++
Sbjct: 43 SMSVFSNIKKTVSGKLEERNQHKQEEAYKQQMIELSQKDKFDLNGFYDHLKKNAEASGASGWRSMIPGVSSMTAVQQMKTFMAILESMEPEYRENPRLINGKIKRKISEKAGHSPEDINNMLRNYEQLSALHIWLVKRVERGLSIPETLDETTELVRQDPTGFPARKFRMKQRR 216
BLAST of EWM22370.1 vs. NCBI_GenBank
Match: gi|299472560|emb|CBN79862.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 81.2629 bits (199), Expect = 7.947e-15 Identity = 47/159 (29.56%), Postives = 89/159 (55.97%), Query Frame = 0
Query: 68 VRHSTVWRVVQNAIQERRASKEEEQFQAELARLASMTRYDLRNFKEAVDKPGNSWFSWVNKVPGVRSMPEVQVGERYRKILGAFTEEELAHPEKIKSREKQRVATQSGESIQEINLLLSLYENSQALHKWVRRRVADKKEMPKTQSECQVLMMGDPAGV 226
VR V VQ+ I R +K+E+QF+ ++ L+ ++L +F + +++P + + + K+P +S E+Q + +K+L T + +PE I+ +QR+A ++G + +++N L+ Y +A+H W+ R K+ +P TQ E V M DP+G
Sbjct: 61 VRGFGVMDSVQDKIINRNTAKQEKQFKEQMEELSLKESFNLDDFAKIIEEPLDKFSA---KLPWNKSREELQAMKMQKKVLEGLTPLQRKNPESIRHGHRQRIADRAGVTTEDVNKALAAYRELKAMHGWLSTRRKRKERIPSTQEELHV-MATDPSGT 215
BLAST of EWM22370.1 vs. NCBI_GenBank
Match: gi|301120384|ref|XP_002907919.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262102950|gb|EEY61002.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 80.8777 bits (198), Expect = 7.980e-15 Identity = 49/174 (28.16%), Postives = 89/174 (51.15%), Query Frame = 0
Query: 66 SLVRHSTVWRVVQNAIQERRASKEEEQFQAELARLASMTRYDLRNFKEAVDKPGNSWFS--WVNKVPGVRSMPEVQVGERYRKILGAFTEEELAHPEKIKSREKQRVATQSGESIQEINLLLSLYENSQALHKWVRRRVADKKEMPKTQSECQVLMMGDPAGVSVGAMQQKQQK 237
S+ S + + V ++ER K+EE ++ ++ L+ ++DL F + + K + + W + +PGV SM VQ + + IL + E P I + K++++ ++G S ++IN +L YE ALH W+ +RV +P+T E L+ DP G + KQ++
Sbjct: 44 SMSVFSNIKKTVSGKLEERNQHKQEEAYKQQMIELSQKDKFDLNGFYDHLKKNAEASGASGWRSMIPGVSSMTAVQQMKTFMDILESMEPEYRESPRLINGKIKRKISEKAGHSPEDINNMLRNYEQLSALHVWLVKRVERGLSIPETLDETTELVRQDPTGFPARKFRMKQRR 217
BLAST of EWM22370.1 vs. NCBI_GenBank
Match: gi|570326045|gb|ETO73993.1| (hypothetical protein F444_10176 [Phytophthora parasitica P1976]) HSP 1 Score: 78.5666 bits (192), Expect = 4.716e-14 Identity = 48/174 (27.59%), Postives = 89/174 (51.15%), Query Frame = 0
Query: 66 SLVRHSTVWRVVQNAIQERRASKEEEQFQAELARLASMTRYDLRNFKEAVDKPGNSWFS--WVNKVPGVRSMPEVQVGERYRKILGAFTEEELAHPEKIKSREKQRVATQSGESIQEINLLLSLYENSQALHKWVRRRVADKKEMPKTQSECQVLMMGDPAGVSVGAMQQKQQK 237
S+ S + + V ++ER K+EE ++ ++ L+ ++DL F + + K + + W + +PGV SM VQ + + IL + E +P I + K++++ ++ S ++IN +L YE ALH W+ +RV +P+T E L+ DP G + KQ++
Sbjct: 43 SMSVFSNIKKTVSGKLEERNQHKQEEAYKQQMIELSQKDKFDLNGFYDHLKKNAEASGASGWRSMIPGVSSMTAVQQMKTFMAILESMEPEYRENPRLINGKIKRKISEKADHSPEDINNMLRNYEQLSALHIWLVKRVERGLSIPETLDETTELVRQDPTGFPARKFRMKQRR 216
BLAST of EWM22370.1 vs. NCBI_GenBank
Match: gi|970619170|gb|KUF67209.1| (chorismate mutase [Phytophthora nicotianae]) HSP 1 Score: 80.8777 bits (198), Expect = 9.341e-14 Identity = 47/162 (29.01%), Postives = 84/162 (51.85%), Query Frame = 0
Query: 66 SLVRHSTVWRVVQNAIQERRASKEEEQFQAELARLASMTRYDLRNFKEAVDK--PGNSWFSWVNKVPGVRSMPEVQVGERYRKILGAFTEEELAHPEKIKSREKQRVATQSGESIQEINLLLSLYENSQALHKWVRRRVADKKEMPKTQSECQVLMMGDPAG 225
S+ S + + V ++ER K+EE ++ ++ L+ ++DL F + + K + W + +PGV SM VQ + + IL + E +P I + K++++ ++G S ++IN +L YE ALH W+ +RV +P+T E L+ DP G
Sbjct: 43 SMSVFSNIKKTVSGKLEERNQHKQEEAYKQQMIELSQKDKFDLNGFYDHLKKNAEASGASGWRSMIPGVSSMTAVQQMKTFMAILESMEPEYRENPRLINGKIKRKISEKAGHSPEDINNMLRNYEQLSALHIWLVKRVERGLSIPETLDETTELVRQDPTG 204
BLAST of EWM22370.1 vs. NCBI_GenBank
Match: gi|855316161|ref|XP_012899085.1| (uncharacterized protein [Blastocystis hominis] >gi|300123765|emb|CBK25037.2| unnamed protein product [Blastocystis hominis]) HSP 1 Score: 76.2554 bits (186), Expect = 1.126e-13 Identity = 46/160 (28.75%), Postives = 88/160 (55.00%), Query Frame = 0
Query: 90 EEQFQAELARLASMTRYDLRNFKEAV----DKPGNSWFSWVNKVPGVRSMPEVQVGERYRKILGAFTEEELAHPEKIKSREKQRVATQSGESIQEINLLLSLYENSQALHKWVRRRVADKKEMPKTQSECQVLMMGDPAGVSVGAMQQKQQKRALKKGNR 245
++ F+ + RLAS ++ L+ +KE +K G + W + +PG EVQ ++Y IL A T +LA P IK+ ++ ++AT + +++ +N +L +++ ++KWV R K +P T +E + +M D +G++V M + +++ K NR
Sbjct: 2 DKGFKELMERLASYDKFGLKEYKETFMWLSEKSGVN--GWKSHIPG----EEVQEMKKYVSILNAMTPLQLAKPHTIKAPDRVKLATDTQLTVEYVNKVLRMFDQQLVIYKWVHMRKEGNKPIPTTMNEMRDMMSRDHSGITVKDMMKLNPQQSKYKNNR 155 The following BLAST results are available for this feature:
BLAST of EWM22370.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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