EWM22370.1, cds8311 (CDS) Nannochloropsis gaditana

Overview
NameEWM22370.1
Unique Namecds8311
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:418345..419091 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22370.1
Productsignal recognition particle protein
Orig transcript idgnl|cribi|Naga_100066g27.10327.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:418345..419091 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006614SRP-dependent cotranslational protein targeting to membrane
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0048500signal recognition particle
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:00083127S RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR004125Signal_recog_particle_SRP54_M
Homology
BLAST of EWM22370.1 vs. NCBI_GenBank
Match: gi|585102871|gb|EWM22370.1| (signal recognition particle protein [Nannochloropsis gaditana])

HSP 1 Score: 515.768 bits (1327), Expect = 0.000e+0
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0
Query:    1 MLSRDVCPMLKHVCPSTFSSTQASHILVTQRQGRHMSLMLSFRCNIRTSLLFNRPHLSTQLATAPSLVRHSTVWRVVQNAIQERRASKEEEQFQAELARLASMTRYDLRNFKEAVDKPGNSWFSWVNKVPGVRSMPEVQVGERYRKILGAFTEEELAHPEKIKSREKQRVATQSGESIQEINLLLSLYENSQALHKWVRRRVADKKEMPKTQSECQVLMMGDPAGVSVGAMQQKQQKRALKKGNRLPF 248
            MLSRDVCPMLKHVCPSTFSSTQASHILVTQRQGRHMSLMLSFRCNIRTSLLFNRPHLSTQLATAPSLVRHSTVWRVVQNAIQERRASKEEEQFQAELARLASMTRYDLRNFKEAVDKPGNSWFSWVNKVPGVRSMPEVQVGERYRKILGAFTEEELAHPEKIKSREKQRVATQSGESIQEINLLLSLYENSQALHKWVRRRVADKKEMPKTQSECQVLMMGDPAGVSVGAMQQKQQKRALKKGNRLPF
Sbjct:    1 MLSRDVCPMLKHVCPSTFSSTQASHILVTQRQGRHMSLMLSFRCNIRTSLLFNRPHLSTQLATAPSLVRHSTVWRVVQNAIQERRASKEEEQFQAELARLASMTRYDLRNFKEAVDKPGNSWFSWVNKVPGVRSMPEVQVGERYRKILGAFTEEELAHPEKIKSREKQRVATQSGESIQEINLLLSLYENSQALHKWVRRRVADKKEMPKTQSECQVLMMGDPAGVSVGAMQQKQQKRALKKGNRLPF 248          
BLAST of EWM22370.1 vs. NCBI_GenBank
Match: gi|1032148382|gb|OAO12629.1| (signal recognition particle protein [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 87.4261 bits (215), Expect = 2.833e-17
Identity = 55/198 (27.78%), Postives = 104/198 (52.53%), Query Frame = 0
Query:   44 CNIRTSLLFNRPHLSTQLATAPSLVRH------STVWRVVQNAIQERRASKEEEQFQAELARLASMTRYDLRNFKEAV----DKPGNSWFSWVNKVPGVRSMPEVQVGERYRKILGAFTEEELAHPEKIKSREKQRVATQSGESIQEINLLLSLYENSQALHKWVRRRVADKKEMPKTQSECQVLMMGDPAGVSVGAM 231
            C   ++L    P    Q  ++PS V        S++   + N  +E++    +E F+  L +LAS   + ++ +KE      +K G +   W + +PGV  M EV+  ++Y  IL A T  +LA P+ IKS ++Q++A  +  +++ +N +L +Y+    ++KWV  R  + K +P T +E + +M  D +G+++  M
Sbjct:   10 CKRASALSLRLPSALAQ--SSPSFVPQRSFGVFSSIKENLANRAEEKKQKTMDEGFKEMLQKLASYDTFSMKEYKEVFIWLSEKSGAN--GWKSHIPGVGKMEEVKEMKKYVSILNAMTPLQLAKPQTIKSPDRQKLAQDTKLTVEYVNKVLRMYDQQLVMYKWVHMRKQNSKPIPTTVAEMKDMMSRDHSGITMKDM 203          
BLAST of EWM22370.1 vs. NCBI_GenBank
Match: gi|950897743|ref|XP_014529406.1| (glycoside hydrolase [Blastocystis sp. subtype 4] >gi|902864017|gb|KNB45963.1| glycoside hydrolase [Blastocystis sp. subtype 4])

HSP 1 Score: 87.8113 bits (216), Expect = 4.407e-16
Identity = 52/182 (28.57%), Postives = 98/182 (53.85%), Query Frame = 0
Query:   63 TAPSLVRH-------STVWRVVQNAIQERRASKEEEQFQAELARLASMTRYDLRNFKEAV----DKPGNSWFSWVNKVPGVRSMPEVQVGERYRKILGAFTEEELAHPEKIKSREKQRVATQSGESIQEINLLLSLYENSQALHKWVRRRVADKKEMPKTQSECQVLMMGDPAGVSVGAMQQ 233
            TAP LV         S++   V   ++E++    ++ F+  + R AS   Y ++ +K+      DK G +   W + +PGV  M EVQ  ++Y  IL A T  +LA P+ IK+ ++ ++A  +  +++ +N +L +Y+    ++KWV  R  + K +P+T SE + +M  D +G+++  M +
Sbjct:  635 TAPFLVTQQRSFGILSSIRDNVNEKMEEKKQKTADKGFKELMERFASYDTYGMKEYKDTFIWLADKSGAN--GWKSHIPGVGKMEEVQEMKKYVSILEAMTPLQLAKPQTIKAPDRIKLAEDTKLTVEYVNKVLRMYDQQFVMYKWVHLRKENNKPIPETMSEMKDMMSRDHSGITMKDMMK 814          
BLAST of EWM22370.1 vs. NCBI_GenBank
Match: gi|675168511|ref|XP_008893140.1| (hypothetical protein PPTG_01561 [Phytophthora parasitica INRA-310] >gi|566022440|gb|ETI45351.1| hypothetical protein F443_10078 [Phytophthora parasitica P1569] >gi|567959706|gb|ETK85274.1| hypothetical protein L915_09872 [Phytophthora parasitica] >gi|567988423|gb|ETL38701.1| hypothetical protein L916_09781 [Phytophthora parasitica] >gi|568017645|gb|ETL91822.1| hypothetical protein L917_09699 [Phytophthora parasitica] >gi|568048077|gb|ETM45144.1| hypothetical protein L914_09748 [Phytophthora parasitica] >gi|568106709|gb|ETN21339.1| hypothetical protein PPTG_01561 [Phytophthora parasitica INRA-310] >gi|570949910|gb|ETP15167.1| hypothetical protein F441_10021 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 81.2629 bits (199), Expect = 4.227e-15
Identity = 49/174 (28.16%), Postives = 90/174 (51.72%), Query Frame = 0
Query:   66 SLVRHSTVWRVVQNAIQERRASKEEEQFQAELARLASMTRYDLRNFKEAVDKPGNSWFS--WVNKVPGVRSMPEVQVGERYRKILGAFTEEELAHPEKIKSREKQRVATQSGESIQEINLLLSLYENSQALHKWVRRRVADKKEMPKTQSECQVLMMGDPAGVSVGAMQQKQQK 237
            S+   S + + V   ++ER   K+EE ++ ++  L+   ++DL  F + + K   +  +  W + +PGV SM  VQ  + +  IL +   E   +P  I  + K++++ ++G S ++IN +L  YE   ALH W+ +RV     +P+T  E   L+  DP G      + KQ++
Sbjct:   43 SMSVFSNIKKTVSGKLEERNQHKQEEAYKQQMIELSQKDKFDLNGFYDHLKKNAEASGASGWRSMIPGVSSMTAVQQMKTFMAILESMEPEYRENPRLINGKIKRKISEKAGHSPEDINNMLRNYEQLSALHIWLVKRVERGLSIPETLDETTELVRQDPTGFPARKFRMKQRR 216          
BLAST of EWM22370.1 vs. NCBI_GenBank
Match: gi|570983343|gb|ETP43192.1| (hypothetical protein F442_09990 [Phytophthora parasitica P10297])

HSP 1 Score: 81.2629 bits (199), Expect = 4.359e-15
Identity = 49/174 (28.16%), Postives = 90/174 (51.72%), Query Frame = 0
Query:   66 SLVRHSTVWRVVQNAIQERRASKEEEQFQAELARLASMTRYDLRNFKEAVDKPGNSWFS--WVNKVPGVRSMPEVQVGERYRKILGAFTEEELAHPEKIKSREKQRVATQSGESIQEINLLLSLYENSQALHKWVRRRVADKKEMPKTQSECQVLMMGDPAGVSVGAMQQKQQK 237
            S+   S + + V   ++ER   K+EE ++ ++  L+   ++DL  F + + K   +  +  W + +PGV SM  VQ  + +  IL +   E   +P  I  + K++++ ++G S ++IN +L  YE   ALH W+ +RV     +P+T  E   L+  DP G      + KQ++
Sbjct:   43 SMSVFSNIKKTVSGKLEERNQHKQEEAYKQQMIELSQKDKFDLNGFYDHLKKNAEASGASGWRSMIPGVSSMTAVQQMKTFMAILESMEPEYRENPRLINGKIKRKISEKAGHSPEDINNMLRNYEQLSALHIWLVKRVERGLSIPETLDETTELVRQDPTGFPARKFRMKQRR 216          
BLAST of EWM22370.1 vs. NCBI_GenBank
Match: gi|299472560|emb|CBN79862.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 81.2629 bits (199), Expect = 7.947e-15
Identity = 47/159 (29.56%), Postives = 89/159 (55.97%), Query Frame = 0
Query:   68 VRHSTVWRVVQNAIQERRASKEEEQFQAELARLASMTRYDLRNFKEAVDKPGNSWFSWVNKVPGVRSMPEVQVGERYRKILGAFTEEELAHPEKIKSREKQRVATQSGESIQEINLLLSLYENSQALHKWVRRRVADKKEMPKTQSECQVLMMGDPAGV 226
            VR   V   VQ+ I  R  +K+E+QF+ ++  L+    ++L +F + +++P + + +   K+P  +S  E+Q  +  +K+L   T  +  +PE I+   +QR+A ++G + +++N  L+ Y   +A+H W+  R   K+ +P TQ E  V M  DP+G 
Sbjct:   61 VRGFGVMDSVQDKIINRNTAKQEKQFKEQMEELSLKESFNLDDFAKIIEEPLDKFSA---KLPWNKSREELQAMKMQKKVLEGLTPLQRKNPESIRHGHRQRIADRAGVTTEDVNKALAAYRELKAMHGWLSTRRKRKERIPSTQEELHV-MATDPSGT 215          
BLAST of EWM22370.1 vs. NCBI_GenBank
Match: gi|301120384|ref|XP_002907919.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262102950|gb|EEY61002.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 80.8777 bits (198), Expect = 7.980e-15
Identity = 49/174 (28.16%), Postives = 89/174 (51.15%), Query Frame = 0
Query:   66 SLVRHSTVWRVVQNAIQERRASKEEEQFQAELARLASMTRYDLRNFKEAVDKPGNSWFS--WVNKVPGVRSMPEVQVGERYRKILGAFTEEELAHPEKIKSREKQRVATQSGESIQEINLLLSLYENSQALHKWVRRRVADKKEMPKTQSECQVLMMGDPAGVSVGAMQQKQQK 237
            S+   S + + V   ++ER   K+EE ++ ++  L+   ++DL  F + + K   +  +  W + +PGV SM  VQ  + +  IL +   E    P  I  + K++++ ++G S ++IN +L  YE   ALH W+ +RV     +P+T  E   L+  DP G      + KQ++
Sbjct:   44 SMSVFSNIKKTVSGKLEERNQHKQEEAYKQQMIELSQKDKFDLNGFYDHLKKNAEASGASGWRSMIPGVSSMTAVQQMKTFMDILESMEPEYRESPRLINGKIKRKISEKAGHSPEDINNMLRNYEQLSALHVWLVKRVERGLSIPETLDETTELVRQDPTGFPARKFRMKQRR 217          
BLAST of EWM22370.1 vs. NCBI_GenBank
Match: gi|570326045|gb|ETO73993.1| (hypothetical protein F444_10176 [Phytophthora parasitica P1976])

HSP 1 Score: 78.5666 bits (192), Expect = 4.716e-14
Identity = 48/174 (27.59%), Postives = 89/174 (51.15%), Query Frame = 0
Query:   66 SLVRHSTVWRVVQNAIQERRASKEEEQFQAELARLASMTRYDLRNFKEAVDKPGNSWFS--WVNKVPGVRSMPEVQVGERYRKILGAFTEEELAHPEKIKSREKQRVATQSGESIQEINLLLSLYENSQALHKWVRRRVADKKEMPKTQSECQVLMMGDPAGVSVGAMQQKQQK 237
            S+   S + + V   ++ER   K+EE ++ ++  L+   ++DL  F + + K   +  +  W + +PGV SM  VQ  + +  IL +   E   +P  I  + K++++ ++  S ++IN +L  YE   ALH W+ +RV     +P+T  E   L+  DP G      + KQ++
Sbjct:   43 SMSVFSNIKKTVSGKLEERNQHKQEEAYKQQMIELSQKDKFDLNGFYDHLKKNAEASGASGWRSMIPGVSSMTAVQQMKTFMAILESMEPEYRENPRLINGKIKRKISEKADHSPEDINNMLRNYEQLSALHIWLVKRVERGLSIPETLDETTELVRQDPTGFPARKFRMKQRR 216          
BLAST of EWM22370.1 vs. NCBI_GenBank
Match: gi|970619170|gb|KUF67209.1| (chorismate mutase [Phytophthora nicotianae])

HSP 1 Score: 80.8777 bits (198), Expect = 9.341e-14
Identity = 47/162 (29.01%), Postives = 84/162 (51.85%), Query Frame = 0
Query:   66 SLVRHSTVWRVVQNAIQERRASKEEEQFQAELARLASMTRYDLRNFKEAVDK--PGNSWFSWVNKVPGVRSMPEVQVGERYRKILGAFTEEELAHPEKIKSREKQRVATQSGESIQEINLLLSLYENSQALHKWVRRRVADKKEMPKTQSECQVLMMGDPAG 225
            S+   S + + V   ++ER   K+EE ++ ++  L+   ++DL  F + + K    +    W + +PGV SM  VQ  + +  IL +   E   +P  I  + K++++ ++G S ++IN +L  YE   ALH W+ +RV     +P+T  E   L+  DP G
Sbjct:   43 SMSVFSNIKKTVSGKLEERNQHKQEEAYKQQMIELSQKDKFDLNGFYDHLKKNAEASGASGWRSMIPGVSSMTAVQQMKTFMAILESMEPEYRENPRLINGKIKRKISEKAGHSPEDINNMLRNYEQLSALHIWLVKRVERGLSIPETLDETTELVRQDPTG 204          
BLAST of EWM22370.1 vs. NCBI_GenBank
Match: gi|855316161|ref|XP_012899085.1| (uncharacterized protein [Blastocystis hominis] >gi|300123765|emb|CBK25037.2| unnamed protein product [Blastocystis hominis])

HSP 1 Score: 76.2554 bits (186), Expect = 1.126e-13
Identity = 46/160 (28.75%), Postives = 88/160 (55.00%), Query Frame = 0
Query:   90 EEQFQAELARLASMTRYDLRNFKEAV----DKPGNSWFSWVNKVPGVRSMPEVQVGERYRKILGAFTEEELAHPEKIKSREKQRVATQSGESIQEINLLLSLYENSQALHKWVRRRVADKKEMPKTQSECQVLMMGDPAGVSVGAMQQKQQKRALKKGNR 245
            ++ F+  + RLAS  ++ L+ +KE      +K G +   W + +PG     EVQ  ++Y  IL A T  +LA P  IK+ ++ ++AT +  +++ +N +L +++    ++KWV  R    K +P T +E + +M  D +G++V  M +   +++  K NR
Sbjct:    2 DKGFKELMERLASYDKFGLKEYKETFMWLSEKSGVN--GWKSHIPG----EEVQEMKKYVSILNAMTPLQLAKPHTIKAPDRVKLATDTQLTVEYVNKVLRMFDQQLVIYKWVHMRKEGNKPIPTTMNEMRDMMSRDHSGITVKDMMKLNPQQSKYKNNR 155          
The following BLAST results are available for this feature:
BLAST of EWM22370.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102871|gb|EWM22370.1|0.000e+0100.00signal recognition particle protein [Nannochlorops... [more]
gi|1032148382|gb|OAO12629.1|2.833e-1727.78signal recognition particle protein [Blastocystis ... [more]
gi|950897743|ref|XP_014529406.1|4.407e-1628.57glycoside hydrolase [Blastocystis sp. subtype 4] >... [more]
gi|675168511|ref|XP_008893140.1|4.227e-1528.16hypothetical protein PPTG_01561 [Phytophthora para... [more]
gi|570983343|gb|ETP43192.1|4.359e-1528.16hypothetical protein F442_09990 [Phytophthora para... [more]
gi|299472560|emb|CBN79862.1|7.947e-1529.56conserved unknown protein [Ectocarpus siliculosus][more]
gi|301120384|ref|XP_002907919.1|7.980e-1528.16conserved hypothetical protein [Phytophthora infes... [more]
gi|570326045|gb|ETO73993.1|4.716e-1427.59hypothetical protein F444_10176 [Phytophthora para... [more]
gi|970619170|gb|KUF67209.1|9.341e-1429.01chorismate mutase [Phytophthora nicotianae][more]
gi|855316161|ref|XP_012899085.1|1.126e-1328.75uncharacterized protein [Blastocystis hominis] >gi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8338rna8338Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications