rna8334, rna8334 (mRNA) Nannochloropsis gaditana

Overview
Namerna8334
Unique Namerna8334
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length840
Alignment locationKK037248.1:401807..405405 +

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Properties
Property NameValue
ProductCCT domain protein
Orig transcript idgnl|cribi|Naga_100066g21.10337.mrna
Orig protein idgnl|cribi|Naga_100066g21.10337
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:401807..405405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100066g21gene8073Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8334rna8334-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22380.1cds8307Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8334 ID=rna8334|Name=rna8334|organism=Nannochloropsis gaditana|type=mRNA|length=840bp
TTTGTCTCCGTCCCTTGTCTGAGCAGACTCCCTCCCTCTCCACTCCCTTT
CAGGCGGATGCAACTACGCGACTTGCTTTGTCTGTGGCAAGCGGGGCCAC
CTTTCTTCCCAGTGCGAGAGGAACGAAAAGGGCCTGTATCCCAAAGGGGG
AGGGTGCCATCGGTGCGGGGAGAAGGACCATTTTGCCGCCCGGTGCCCCA
CCAGGGAAGGAGGAAAGGAAACGGGGACGGAGGAGGATGGTGAGAGGGAA
AGGCAGGGGGGGCAGGAAGGGGCAGACGAAGCTGCAGTCAAAGAGAAGGA
GTACGGTGGCACCGATCCTTCAATTTTTAAGGCACGATATGTGAAAGAGA
AGCGGCCCTGGCAGGAGTCGATGACACAAGAGATCGTCTTTGATGAACAG
AGCTCACAAGGGGCCAAGGGCGTCTATGCAACGAACACAAATGCTGCCGC
TAGGACATTAGGGGGGGACGACCTTCATGAGCACGATTTCCTCTTGGAAT
CGCTCGACGATGAAGATGAGGAAGGACTCGACTCTCTGCGGGGCGAAGCT
GTTCGCAAGGCCGGAATGAGCGGAGGGAGGGGGAGAGGACGTGGCCGAGG
AAGGGGGGCTCGTGATTCCGGTAGGTATGGGCGTATGCGCAATAGTCACG
CTCCTTTGCAAGGCCCCACGAGTTCTAGGTCACCCGTGGAAGATAGGAAG
AAAGCGAACAAGACCAAACCGAAGACGGTTGTTTTCTAATGCTCTGTGGC
CTCGGAAAATTTCCCTGCATACTAAGCTCGTTTGCATGCACACCCAAACG
ATGAATAAAATTGTTTCACTGAATCAATCAGAGTTATCTG
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protein sequence of rna8334

>rna8334-protein ID=rna8334-protein|Name=rna8334|organism=Nannochloropsis gaditana|type=polypeptide|length=580bp
MILASPAPAATPAAEKAAGAALTRDSSTTVPKAPVAGSSDAQNAPIPAAA
TPWEVKSVQEWGGLSDTSSNSTSAGSSVAGSVGSVGNSPRPHPPVDEEDL
ACASDLEMAAAVVLSPPTPGQPSLAPSAAPPGPVSAPAACTVKREASEEM
ETEDAEAASILSKVLPDMHKLTTTFADARGSIPKKASVQGHGGGSDRAAS
IGTSREAIGDAGRGSSPGSRRGGAKGYEDLLDCLASLASNRPPVVPAHCR
ASRMSVDDMDLEQHCRRPNKGSRGPSPFSPSLLAAARGMEDSDEEEEEDG
EEAGRYYYATGGAGLGGGGLDGMEVGRGRRPRAASNPEGCDTWRRYGTSG
VPVAMDRKGLAKGQPTHASGAAVHDKAGPAAGGSMITFHGGLASTADSLA
SEGHAAASTLQAGARAAAAASAAASAAAAEAGAGSGAGSILPHMLAKYSD
VYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVR
VKGRFVKLPPKEAGEEEGGGGMSWSPSGQALAVIQEGVAETAKSVVDGEE
EEEEGEEEEESEEMEKEGPVCRMRRHSICF
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mRNA from alignment at KK037248.1:401807..405405+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8334 ID=rna8334|Name=rna8334|organism=Nannochloropsis gaditana|type=mRNA|length=3599bp|location=Sequence derived from alignment at KK037248.1:401807..405405+ (Nannochloropsis gaditana)
GCATGTCCCGGCGTGAAATGTTTGCTGAGCCCTGGAATGTGCATGTGAAG GGTATTATAGCTCGGAAGGATGGTTATACTTGTCCCTTAACGTATTTTTT ATCTTTTATGCCAAGACCAAGCAGACATCACGCCCAGAGCGGTCACCTGC GGTTGGAGTGAAACGCGCTGTGGTGCTAGCGCGGACCGTCCGTGCTATAC GACCGCATTCCGACCTTAAATTACCACACATAGGTAGTTAATCACATCCT CAACATCTTCTCTATGATTTTGGCATCACCTGCTCCGGCCGCGACCCCAG CGGCAGAAAAAGCAGCGGGCGCAGCACTCACGAGGGACAGCTCAACGACG GTACCTAAAGCGCCTGTAGCGGGGTCATCTGATGCTCAAAACGCTCCCAT TCCAGCCGCTGCGACACCTTGGGAAGTGAAATCGGTTCAAGAATGGTACG TAAATACTCAAGTAGGAGAGGACAGGAGAACTGGCTGTGGATACCCACGT CACTCGGGGTTGTGAAGGAGAACGCGTGTCAcatcggagggaggagattc CCTCTGTGCTGGAAAGGGTGTTTCCCACCCCTTGTGGGGCCTCACGAGAG GGCACGTCGTTCGCCACTCTTGAGTGGCAATTTAGGATCGGAAGAAGGGC CTTGAAAATAAATTGCCATCAACTTTGCTCGGAAAGCACTTTCCTTCGTA CGCTCAGCCCCGACATGCACcgactttctttccttctcccagggGAGGCT TAAGTGATACATCCAGCAATTCCACGTCAGCAGGGAGCTCCGTAGCAGGC AGCGTGGGAAGTGTGGGGAACAGCCCACGCCCGCACCCACCcgtcgacga ggaggacctggCGTGCGCGTCTGATCTCGAGATGGCTGCGGCCgttgtcc tctctcccccaaCCCCCGGACAGCCCTCTCTTGCACCTTCTGCGgctccc cctggccctgtctctgcccccgccgcgTGTACCGTCAAACGTGAGGCgtc ggaggagatggaaaccgaggatgcggaggcggcgagCATCCTGTCCAAGG TGCTGCCGGACATGCACAAACTGACCACCACCTTTGCGGACGCGCGCGGG AGCATCCCCAAGAAAGCGTCAGTGCAGGGACacggcggaggcagcgacCG TGCGGCCTCCATTGGAACCTCCCGCGAGGCCATCGGCGATGCAGGCAGGG GTTCGTCCCCCGGGAGCCGCAGGGGGGGCGCCAAGGGCTACGAGGACCTG TTGGATTGCCTGGCCTCCTTGGCGTCCAATCGCCCCCCTGTGGTGCCTGC GCACTGCCGGGCGTCTCGCATGTCGGTAGACGACATGGATTTGGAGCAGC ATTGCCGTCGGCCAAACAAGGGCAGCCGGGGCCCgagccctttctccccc tctttgctggcggcggcgagggggatggaggactcggacgaggaggagga ggaggacggggaggaagcagggcggTATTACTATGCAAcgggcggggcag gcctgggcgggggggggctggacgGCATGGAAGTGGGCCGGGGCCGGCGT CCCCGCGCCGCTTCGAACCCCGAGGGTTGTGACACTTGGCGCCGGTACGG GACCTCGGGAGTCCCCGTGGCGATGGACAGGAAAGGCCTCGCCAAGGGTC AGCCCACGCATGCATCAGGAGCCGCGGTCCACGACAAGGCGGGCCCTGCC GCGGGCGGTAGCATGATTACCTTCCACGGCGGCCTCGCGAGCACTGCGGA TAGCTTAGCGTCAGAGGGCCATGCGGCTGCTTCGACCCTGCAGGCCGGTG CTAGAGCGGCCGCCGCGGCGTCCGCTGCTGCCAGTGCTGCCGCTGCAGAA GCTGGGGCGGGGTCGGGTGCCGGGAGTATTCTGCCGCACATGTTGGCCAA GTACTCGGACGTTTACAACAAGCACGGACGGATCGGGATCTACACACGGG TacgtggaggggcggagCGACGCGACCATGTgggaacgggggggagggag tcgtTTTTTGTAGGGCGGTCCGACCTCGGGTGGGGCGTCGGTCTCCCGGG CCTTGTGGTCTTCTTCTCACCCCGGCTTCCCTTTCAACTGGTTTAGGACG AGCGGGATGCCATCATTGCTCGTTTTCGTGAAAAGCGCCAACGGCGcgtg tggaagaagaagatccGCTACTCGTGCCGCAAGAACTTGGCGGACAAGCG GGTGCGTGTGAAGGGACGCTTTGTCAAGCTGCCGCCcaaggaggccgggg aggaggaggggggggggggcatgtccTGGTCGCCCTCGggccaggcgctg gccgTGATCCAGGAGGGCGTTGCGGAAACGGCAAAAAGCGTcgtggatgg ggaggaagaggaggaagagggggaagaggaggaggagtccgaggagatgg agaaggagggccccGTCTGTCGCATGCGACGACACAGCATCTGCTTCTAA CGTTTGGATGTCAAGATGGTAGCTTTTGTAGATAGAAGGGTGTTGCAGCA CCTTCGAAAGATGCGCTTATGTGTACAGTTGTTTTTCATTGTATGGCTCA ATTGATTGTAGTTTTGAGTAGAATCACTGAAGTATAATGCGGAGAGCAGA GAAGACGTGTGAAACCCGGCCCATATGTCTCTTAAAAGAGGAAAGCAGCG ATCTGATTGAGAGGTTGGTGACAGTGACTTGCATCACACGCATCACTTAT TTGTCTGAGCAAGAAAGCGCCCATTCATGATATGGCTTGTGGAAAGGTGA ATGTTGTTCTTAttgagagcgaggagaagagtcCAGTGCGAGGAGTGGTG TGGCCTTTGTCCTCCACGGCAGTGTCAACAGCTCCACGGCCGGGATCGAC TACGATGGCGTaacaggaggagaaaggaaaactGCGAAGGCGAAAGAAGG AGTGCGATCGGGGCAGCACCAGCTGTGAATCTTGAGTGTAATGCTTGACA TGTGAAGCGAGAGGTTACGAGTAATGTGCCACGTGTCAGAGAAagtgagg gaaaaaggaCCGGATGATGCTCCCAGGAGAAGGATGGCTGAGCCGAAACA AGCTGAGACCTGTGCTGTACAGCTCAAAATTGAAATGAAAAAAACGTTGC GCATggtcggagggggaaaataaGTGAGGTGCAAAACCAGAGAGGAGAAT AGAAGAGGGATAACCGCCGTAAAAAGAGAACCATTTATGGACATGCGCAC ACACATGCGTCTTCTTGGCCATGACGCAACGTGTGCGTGGTATCTGATGC CTGCAGGACAAGTTGCCCCTTTTGAGAAGCTGAACATCAAGGAGCGGGGT ACAAATGGGGAATATGAGGGACTATCCACGCATTGCGTGAGGGCGAGACG GAATGTGTGCGTCCCCTCCACCATTACAGGCTGtcagaagaggaaaacgg aTTTAGCTCGTCATGTCTGTTGTGTTTATTTTGGGTGTAAGAGTCAAGAT AATTGAGTCAGCAAGGCGTCAGGCTTCCACTGCAGTGTCCGTTGGGATGC ACCAAAATAATTTAGTGTCATGAAAGTGTGATTGATGCCTCTCTGAGAGG ATTTAAAGAGAAGCGTTGCTTTGAAGAAGATGGCCTTATCCAGATGAAC
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Coding sequence (CDS) from alignment at KK037248.1:401807..405405+

>rna8334 ID=rna8334|Name=rna8334|organism=Nannochloropsis gaditana|type=CDS|length=5229bp|location=Sequence derived from alignment at KK037248.1:401807..405405+ (Nannochloropsis gaditana)
ATGATTTTGGCATCACCTGCTCCGGCCGCGACCCCAGCGGCAGAAAAAGC
AGCGGGCGCAGCACTCACGAGGGACAGCTCAACGACGGTACCTAAAGCGC
CTGTAGCGGGGTCATCTGATGCTCAAAACGCTCCCATTCCAGCCGCTGCG
ACACCTTGGGAAGTGAAATCGGTTCAAGAATGggGAGGCTTAAGTGATAC
ATCCAGCAATTCCACGTCAGCAGGGAGCTCCGTAGCAGGCAGCGTGGGAA
GTGTGGGGAACAGCCCACGCCCGCACCCACCcgtcgacgaggaggacctg
gCGTGCGCGTCTGATCTCGAGATGGCTGCGGCCgttgtcctctctccccc
aaCCCCCGGACAGCCCTCTCTTGCACCTTCTGCGgctccccctggccctg
tctctgcccccgccgcgTGTACCGTCAAACGTGAGGCgtcggaggagatg
gaaaccgaggatgcggaggcggcgagCATCCTGTCCAAGGTGCTGCCGGA
CATGCACAAACTGACCACCACCTTTGCGGACGCGCGCGGGAGCATCCCCA
AGAAAGCGTCAGTGCAGGGACacggcggaggcagcgacCGTGCGGCCTCC
ATTGGAACCTCCCGCGAGGCCATCGGCGATGCAGGCAGGGGTTCGTCCCC
CGGGAGCCGCAGGGGGGGCGCCAAGGGCTACGAGGACCTGTTGGATTGCC
TGGCCTCCTTGGCGTCCAATCGCCCCCCTGTGGTGCCTGCGCACTGCCGG
GCGTCTCGCATGTCGGTAGACGACATGGATTTGGAGCAGCATTGCCGTCG
GCCAAACAAGGGCAGCCGGGGCCCgagccctttctccccctctttgctgg
cggcggcgagggggatggaggactcggacgaggaggaggaggaggacggg
gaggaagcagggcggTATTACTATGCAAcgggcggggcaggcctgggcgg
gggggggctggacgGCATGGAAGTGGGCCGGGGCCGGCGTCCCCGCGCCG
CTTCGAACCCCGAGGGTTGTGACACTTGGCGCCGGTACGGGACCTCGGGA
GTCCCCGTGGCGATGGACAGGAAAGGCCTCGCCAAGGGTCAGCCCACGCA
TGCATCAGGAGCCGCGGTCCACGACAAGGCGGGCCCTGCCGCGGGCGGTA
GCATGATTACCTTCCACGGCGGCCTCGCGAGCACTGCGGATAGCTTAGCG
TCAGAGGGCCATGCGGCTGCTTCGACCCTGCAGGCCGGTGCTAGAGCGGC
CGCCGCGGCGTCCGCTGCTGCCAGTGCTGCCGCTGCAGAAGCTGGGGCGG
GGTCGGGTGCCGGGAGTATTCTGCCGCACATGTTGGCCAAGTACTCGGAC
GTTTACAACAAGCACGGACGGATCGGGATCTACACACGGGACGAGCGGGA
TGCCATCATTGCTCGTTTTCGTGAAAAGCGCCAACGGCGcgtgtggaaga
agaagatccGCTACTCGTGCCGCAAGAACTTGGCGGACAAGCGGGTGCGT
GTGAAGGGACGCTTTGTCAAGCTGCCGCCcaaggaggccggggaggagga
ggggggggggggcatgtccTGGTCGCCCTCGggccaggcgctggccgTGA
TCCAGGAGGGCGTTGCGGAAACGGCAAAAAGCGTcgtggatggggaggaa
gaggaggaagagggggaagaggaggaggagtccgaggagatggagaagga
gggccccGTCTGTCGCATGCGACGACACAGCATCTGCTTCTAAATGATTT
TGGCATCACCTGCTCCGGCCGCGACCCCAGCGGCAGAAAAAGCAGCGGGC
GCAGCACTCACGAGGGACAGCTCAACGACGGTACCTAAAGCGCCTGTAGC
GGGGTCATCTGATGCTCAAAACGCTCCCATTCCAGCCGCTGCGACACCTT
GGGAAGTGAAATCGGTTCAAGAATGggGAGGCTTAAGTGATACATCCAGC
AATTCCACGTCAGCAGGGAGCTCCGTAGCAGGCAGCGTGGGAAGTGTGGG
GAACAGCCCACGCCCGCACCCACCcgtcgacgaggaggacctggCGTGCG
CGTCTGATCTCGAGATGGCTGCGGCCgttgtcctctctcccccaaCCCCC
GGACAGCCCTCTCTTGCACCTTCTGCGgctccccctggccctgtctctgc
ccccgccgcgTGTACCGTCAAACGTGAGGCgtcggaggagatggaaaccg
aggatgcggaggcggcgagCATCCTGTCCAAGGTGCTGCCGGACATGCAC
AAACTGACCACCACCTTTGCGGACGCGCGCGGGAGCATCCCCAAGAAAGC
GTCAGTGCAGGGACacggcggaggcagcgacCGTGCGGCCTCCATTGGAA
CCTCCCGCGAGGCCATCGGCGATGCAGGCAGGGGTTCGTCCCCCGGGAGC
CGCAGGGGGGGCGCCAAGGGCTACGAGGACCTGTTGGATTGCCTGGCCTC
CTTGGCGTCCAATCGCCCCCCTGTGGTGCCTGCGCACTGCCGGGCGTCTC
GCATGTCGGTAGACGACATGGATTTGGAGCAGCATTGCCGTCGGCCAAAC
AAGGGCAGCCGGGGCCCgagccctttctccccctctttgctggcggcggc
gagggggatggaggactcggacgaggaggaggaggaggacggggaggaag
cagggcggTATTACTATGCAAcgggcggggcaggcctgggcggggggggg
ctggacgGCATGGAAGTGGGCCGGGGCCGGCGTCCCCGCGCCGCTTCGAA
CCCCGAGGGTTGTGACACTTGGCGCCGGTACGGGACCTCGGGAGTCCCCG
TGGCGATGGACAGGAAAGGCCTCGCCAAGGGTCAGCCCACGCATGCATCA
GGAGCCGCGGTCCACGACAAGGCGGGCCCTGCCGCGGGCGGTAGCATGAT
TACCTTCCACGGCGGCCTCGCGAGCACTGCGGATAGCTTAGCGTCAGAGG
GCCATGCGGCTGCTTCGACCCTGCAGGCCGGTGCTAGAGCGGCCGCCGCG
GCGTCCGCTGCTGCCAGTGCTGCCGCTGCAGAAGCTGGGGCGGGGTCGGG
TGCCGGGAGTATTCTGCCGCACATGTTGGCCAAGTACTCGGACGTTTACA
ACAAGCACGGACGGATCGGGATCTACACACGGGACGAGCGGGATGCCATC
ATTGCTCGTTTTCGTGAAAAGCGCCAACGGCGcgtgtggaagaagaagat
ccGCTACTCGTGCCGCAAGAACTTGGCGGACAAGCGGGTGCGTGTGAAGG
GACGCTTTGTCAAGCTGCCGCCcaaggaggccggggaggaggaggggggg
gggggcatgtccTGGTCGCCCTCGggccaggcgctggccgTGATCCAGGA
GGGCGTTGCGGAAACGGCAAAAAGCGTcgtggatggggaggaagaggagg
aagagggggaagaggaggaggagtccgaggagatggagaaggagggcccc
GTCTGTCGCATGCGACGACACAGCATCTGCTTCTAAATGATTTTGGCATC
ACCTGCTCCGGCCGCGACCCCAGCGGCAGAAAAAGCAGCGGGCGCAGCAC
TCACGAGGGACAGCTCAACGACGGTACCTAAAGCGCCTGTAGCGGGGTCA
TCTGATGCTCAAAACGCTCCCATTCCAGCCGCTGCGACACCTTGGGAAGT
GAAATCGGTTCAAGAATGggGAGGCTTAAGTGATACATCCAGCAATTCCA
CGTCAGCAGGGAGCTCCGTAGCAGGCAGCGTGGGAAGTGTGGGGAACAGC
CCACGCCCGCACCCACCcgtcgacgaggaggacctggCGTGCGCGTCTGA
TCTCGAGATGGCTGCGGCCgttgtcctctctcccccaaCCCCCGGACAGC
CCTCTCTTGCACCTTCTGCGgctccccctggccctgtctctgcccccgcc
gcgTGTACCGTCAAACGTGAGGCgtcggaggagatggaaaccgaggatgc
ggaggcggcgagCATCCTGTCCAAGGTGCTGCCGGACATGCACAAACTGA
CCACCACCTTTGCGGACGCGCGCGGGAGCATCCCCAAGAAAGCGTCAGTG
CAGGGACacggcggaggcagcgacCGTGCGGCCTCCATTGGAACCTCCCG
CGAGGCCATCGGCGATGCAGGCAGGGGTTCGTCCCCCGGGAGCCGCAGGG
GGGGCGCCAAGGGCTACGAGGACCTGTTGGATTGCCTGGCCTCCTTGGCG
TCCAATCGCCCCCCTGTGGTGCCTGCGCACTGCCGGGCGTCTCGCATGTC
GGTAGACGACATGGATTTGGAGCAGCATTGCCGTCGGCCAAACAAGGGCA
GCCGGGGCCCgagccctttctccccctctttgctggcggcggcgaggggg
atggaggactcggacgaggaggaggaggaggacggggaggaagcagggcg
gTATTACTATGCAAcgggcggggcaggcctgggcgggggggggctggacg
GCATGGAAGTGGGCCGGGGCCGGCGTCCCCGCGCCGCTTCGAACCCCGAG
GGTTGTGACACTTGGCGCCGGTACGGGACCTCGGGAGTCCCCGTGGCGAT
GGACAGGAAAGGCCTCGCCAAGGGTCAGCCCACGCATGCATCAGGAGCCG
CGGTCCACGACAAGGCGGGCCCTGCCGCGGGCGGTAGCATGATTACCTTC
CACGGCGGCCTCGCGAGCACTGCGGATAGCTTAGCGTCAGAGGGCCATGC
GGCTGCTTCGACCCTGCAGGCCGGTGCTAGAGCGGCCGCCGCGGCGTCCG
CTGCTGCCAGTGCTGCCGCTGCAGAAGCTGGGGCGGGGTCGGGTGCCGGG
AGTATTCTGCCGCACATGTTGGCCAAGTACTCGGACGTTTACAACAAGCA
CGGACGGATCGGGATCTACACACGGGACGAGCGGGATGCCATCATTGCTC
GTTTTCGTGAAAAGCGCCAACGGCGcgtgtggaagaagaagatccGCTAC
TCGTGCCGCAAGAACTTGGCGGACAAGCGGGTGCGTGTGAAGGGACGCTT
TGTCAAGCTGCCGCCcaaggaggccggggaggaggaggggggggggggca
tgtccTGGTCGCCCTCGggccaggcgctggccgTGATCCAGGAGGGCGTT
GCGGAAACGGCAAAAAGCGTcgtggatggggaggaagaggaggaagaggg
ggaagaggaggaggagtccgaggagatggagaaggagggccccGTCTGTC
GCATGCGACGACACAGCATCTGCTTCTAA
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