EWM22380.1, cds8307 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22380.1 vs. NCBI_GenBank
Match: gi|585102881|gb|EWM22380.1| (CCT domain protein [Nannochloropsis gaditana]) HSP 1 Score: 1154.81 bits (2986), Expect = 0.000e+0 Identity = 580/580 (100.00%), Postives = 580/580 (100.00%), Query Frame = 0
Query: 1 MILASPAPAATPAAEKAAGAALTRDSSTTVPKAPVAGSSDAQNAPIPAAATPWEVKSVQEWGGLSDTSSNSTSAGSSVAGSVGSVGNSPRPHPPVDEEDLACASDLEMAAAVVLSPPTPGQPSLAPSAAPPGPVSAPAACTVKREASEEMETEDAEAASILSKVLPDMHKLTTTFADARGSIPKKASVQGHGGGSDRAASIGTSREAIGDAGRGSSPGSRRGGAKGYEDLLDCLASLASNRPPVVPAHCRASRMSVDDMDLEQHCRRPNKGSRGPSPFSPSLLAAARGMEDSDEEEEEDGEEAGRYYYATGGAGLGGGGLDGMEVGRGRRPRAASNPEGCDTWRRYGTSGVPVAMDRKGLAKGQPTHASGAAVHDKAGPAAGGSMITFHGGLASTADSLASEGHAAASTLQAGARAAAAASAAASAAAAEAGAGSGAGSILPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVKLPPKEAGEEEGGGGMSWSPSGQALAVIQEGVAETAKSVVDGEEEEEEGEEEEESEEMEKEGPVCRMRRHSICF 580
MILASPAPAATPAAEKAAGAALTRDSSTTVPKAPVAGSSDAQNAPIPAAATPWEVKSVQEWGGLSDTSSNSTSAGSSVAGSVGSVGNSPRPHPPVDEEDLACASDLEMAAAVVLSPPTPGQPSLAPSAAPPGPVSAPAACTVKREASEEMETEDAEAASILSKVLPDMHKLTTTFADARGSIPKKASVQGHGGGSDRAASIGTSREAIGDAGRGSSPGSRRGGAKGYEDLLDCLASLASNRPPVVPAHCRASRMSVDDMDLEQHCRRPNKGSRGPSPFSPSLLAAARGMEDSDEEEEEDGEEAGRYYYATGGAGLGGGGLDGMEVGRGRRPRAASNPEGCDTWRRYGTSGVPVAMDRKGLAKGQPTHASGAAVHDKAGPAAGGSMITFHGGLASTADSLASEGHAAASTLQAGARAAAAASAAASAAAAEAGAGSGAGSILPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVKLPPKEAGEEEGGGGMSWSPSGQALAVIQEGVAETAKSVVDGEEEEEEGEEEEESEEMEKEGPVCRMRRHSICF
Sbjct: 1 MILASPAPAATPAAEKAAGAALTRDSSTTVPKAPVAGSSDAQNAPIPAAATPWEVKSVQEWGGLSDTSSNSTSAGSSVAGSVGSVGNSPRPHPPVDEEDLACASDLEMAAAVVLSPPTPGQPSLAPSAAPPGPVSAPAACTVKREASEEMETEDAEAASILSKVLPDMHKLTTTFADARGSIPKKASVQGHGGGSDRAASIGTSREAIGDAGRGSSPGSRRGGAKGYEDLLDCLASLASNRPPVVPAHCRASRMSVDDMDLEQHCRRPNKGSRGPSPFSPSLLAAARGMEDSDEEEEEDGEEAGRYYYATGGAGLGGGGLDGMEVGRGRRPRAASNPEGCDTWRRYGTSGVPVAMDRKGLAKGQPTHASGAAVHDKAGPAAGGSMITFHGGLASTADSLASEGHAAASTLQAGARAAAAASAAASAAAAEAGAGSGAGSILPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVKLPPKEAGEEEGGGGMSWSPSGQALAVIQEGVAETAKSVVDGEEEEEEGEEEEESEEMEKEGPVCRMRRHSICF 580
BLAST of EWM22380.1 vs. NCBI_GenBank
Match: gi|553180920|ref|XP_005853481.1| (hypothetical protein NGA_0445710, partial [Nannochloropsis gaditana CCMP526] >gi|422295581|gb|EKU22880.1| hypothetical protein NGA_0445710, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 1030.78 bits (2664), Expect = 0.000e+0 Identity = 520/520 (100.00%), Postives = 520/520 (100.00%), Query Frame = 0
Query: 1 MILASPAPAATPAAEKAAGAALTRDSSTTVPKAPVAGSSDAQNAPIPAAATPWEVKSVQEWGGLSDTSSNSTSAGSSVAGSVGSVGNSPRPHPPVDEEDLACASDLEMAAAVVLSPPTPGQPSLAPSAAPPGPVSAPAACTVKREASEEMETEDAEAASILSKVLPDMHKLTTTFADARGSIPKKASVQGHGGGSDRAASIGTSREAIGDAGRGSSPGSRRGGAKGYEDLLDCLASLASNRPPVVPAHCRASRMSVDDMDLEQHCRRPNKGSRGPSPFSPSLLAAARGMEDSDEEEEEDGEEAGRYYYATGGAGLGGGGLDGMEVGRGRRPRAASNPEGCDTWRRYGTSGVPVAMDRKGLAKGQPTHASGAAVHDKAGPAAGGSMITFHGGLASTADSLASEGHAAASTLQAGARAAAAASAAASAAAAEAGAGSGAGSILPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVKLPPKEAGEEEGGG 520
MILASPAPAATPAAEKAAGAALTRDSSTTVPKAPVAGSSDAQNAPIPAAATPWEVKSVQEWGGLSDTSSNSTSAGSSVAGSVGSVGNSPRPHPPVDEEDLACASDLEMAAAVVLSPPTPGQPSLAPSAAPPGPVSAPAACTVKREASEEMETEDAEAASILSKVLPDMHKLTTTFADARGSIPKKASVQGHGGGSDRAASIGTSREAIGDAGRGSSPGSRRGGAKGYEDLLDCLASLASNRPPVVPAHCRASRMSVDDMDLEQHCRRPNKGSRGPSPFSPSLLAAARGMEDSDEEEEEDGEEAGRYYYATGGAGLGGGGLDGMEVGRGRRPRAASNPEGCDTWRRYGTSGVPVAMDRKGLAKGQPTHASGAAVHDKAGPAAGGSMITFHGGLASTADSLASEGHAAASTLQAGARAAAAASAAASAAAAEAGAGSGAGSILPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVKLPPKEAGEEEGGG
Sbjct: 1 MILASPAPAATPAAEKAAGAALTRDSSTTVPKAPVAGSSDAQNAPIPAAATPWEVKSVQEWGGLSDTSSNSTSAGSSVAGSVGSVGNSPRPHPPVDEEDLACASDLEMAAAVVLSPPTPGQPSLAPSAAPPGPVSAPAACTVKREASEEMETEDAEAASILSKVLPDMHKLTTTFADARGSIPKKASVQGHGGGSDRAASIGTSREAIGDAGRGSSPGSRRGGAKGYEDLLDCLASLASNRPPVVPAHCRASRMSVDDMDLEQHCRRPNKGSRGPSPFSPSLLAAARGMEDSDEEEEEDGEEAGRYYYATGGAGLGGGGLDGMEVGRGRRPRAASNPEGCDTWRRYGTSGVPVAMDRKGLAKGQPTHASGAAVHDKAGPAAGGSMITFHGGLASTADSLASEGHAAASTLQAGARAAAAASAAASAAAAEAGAGSGAGSILPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVKLPPKEAGEEEGGG 520
BLAST of EWM22380.1 vs. NCBI_GenBank
Match: gi|299115164|emb|CBN75530.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 120.553 bits (301), Expect = 1.522e-25 Identity = 51/66 (77.27%), Postives = 62/66 (93.94%), Query Frame = 0
Query: 447 KYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVKLPPKE 512
+Y+D+YNK+GRIGIYTR ER+AIIARF+ KR RRVWKKKIRY+CRKNLADKR+RVKGRFVK+ P++
Sbjct: 380 RYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQ 445
BLAST of EWM22380.1 vs. NCBI_GenBank
Match: gi|223998708|ref|XP_002289027.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976135|gb|EED94463.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 118.242 bits (295), Expect = 1.751e-24 Identity = 53/78 (67.95%), Postives = 60/78 (76.92%), Query Frame = 0
Query: 434 GSGAGS----ILPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVK 507
GSG G LPH L+KY +VYNK+GRIGIYT ER II +F KR RRVW KKIRY+CRKNLAD+R+RVKGRFVK
Sbjct: 369 GSGGGEKGVLTLPHSLSKYKEVYNKNGRIGIYTPAERAVIITKFNAKRARRVWNKKIRYNCRKNLADRRLRVKGRFVK 446
BLAST of EWM22380.1 vs. NCBI_GenBank
Match: gi|1072223056|gb|OEU07813.1| (hypothetical protein FRACYDRAFT_250436 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 117.857 bits (294), Expect = 2.072e-24 Identity = 49/67 (73.13%), Postives = 60/67 (89.55%), Query Frame = 0
Query: 441 LPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVK 507
LPH L KY ++YNK+GRIGIYT ER AIIARF++KR+ R+WKKKIRY+CRKNLAD+R+R+KGRFVK
Sbjct: 355 LPHSLKKYKEIYNKNGRIGIYTPGERAAIIARFQKKRKSRMWKKKIRYNCRKNLADRRLRIKGRFVK 421
BLAST of EWM22380.1 vs. NCBI_GenBank
Match: gi|397584688|gb|EJK53050.1| (hypothetical protein THAOC_27584 [Thalassiosira oceanica]) HSP 1 Score: 118.627 bits (296), Expect = 2.967e-24 Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = 0
Query: 441 LPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVK 507
LPH LAKY ++YNK+GRIGIYT ER AII +F EKR+RRVW KKIRY+CRK+LADKR+RVKGRFVK
Sbjct: 378 LPHSLAKYKEMYNKNGRIGIYTPSERAAIIQKFNEKRRRRVWNKKIRYNCRKSLADKRMRVKGRFVK 444
BLAST of EWM22380.1 vs. NCBI_GenBank
Match: gi|1210516309|dbj|GAX24807.1| (hypothetical protein FisN_18Lh110 [Fistulifera solaris]) HSP 1 Score: 115.161 bits (287), Expect = 4.262e-24 Identity = 68/159 (42.77%), Postives = 90/159 (56.60%), Query Frame = 0
Query: 441 LPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVKLPPKEAGEEEGGGGMSWSPSGQALAVIQEGVAETAKSVVDGEEEE-----------EEGEEEEESEEME---------KEGPVCRMRRHSIC 579
LPH L KY VYNK+GRIGIYT ER AII R+ +KR RRVW KKIRY+CRK+LAD+R+R+KGRFVK +E + LA QEG E A +D +E++ E GE+E+ + + ++ P R+RRH+I
Sbjct: 256 LPHSLGKYKQVYNKNGRIGIYTPAERAAIIDRYHQKRSRRVWNKKIRYNCRKSLADRRLRIKGRFVKRSEQEM-------------LAKQLAQ-QEGSDENA---MDDDEDDGGRSPGEHVSGESGEDEDMQDVLNDPEAGFVPTEDQPYRRLRRHTIT 397
BLAST of EWM22380.1 vs. NCBI_GenBank
Match: gi|1210523267|dbj|GAX17904.1| (hypothetical protein FisN_18Hh110 [Fistulifera solaris]) HSP 1 Score: 112.849 bits (281), Expect = 2.159e-23 Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 0
Query: 441 LPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVK-----LPPKEAGEEEG 518
LPH L KY VYNK+GRIGIYT ER AII R+ +KR RRVW KKIRY+CRK+LAD+R+R+KGRFVK + K+ ++EG
Sbjct: 251 LPHSLGKYKQVYNKNGRIGIYTPAERAAIIDRYHQKRSRRVWNKKIRYNCRKSLADRRLRIKGRFVKRSEQEMLAKQLAQQEG 333
BLAST of EWM22380.1 vs. NCBI_GenBank
Match: gi|219112871|ref|XP_002186019.1| (CCT motif containing protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582869|gb|ACI65489.1| CCT motif containing protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 109.768 bits (273), Expect = 2.849e-22 Identity = 61/140 (43.57%), Postives = 86/140 (61.43%), Query Frame = 0
Query: 441 LPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVKLPPKEAGEEEGGGGMSWSPSGQ--ALAVIQEGVAETAKSVVDGEEEEEEGEEEEESEEMEKEGPVCRMRRHSI 578
LPH L KY + YN +GRIGIYT +ER A+I R+++KR RRVW KKIRY CRKNLAD+R+RVKGRFV K +E+ + Q +A+ ++ VA +G+E+ + + E + + P R+RRH+I
Sbjct: 282 LPHSLPKYKEFYN-NGRIGIYTPNERAAVIDRYKDKRCRRVWNKKIRYGCRKNLADRRLRVKGRFV----KRCEQEQLAKLLKLQAEEQESNVALSEDDVA------TNGDEDMPDVNDPEAGFDPTDDQPYRRVRRHTI 410
BLAST of EWM22380.1 vs. NCBI_GenBank
Match: gi|1210517250|dbj|GAX23885.1| (hypothetical protein FisN_20Hh091 [Fistulifera solaris]) HSP 1 Score: 85.8853 bits (211), Expect = 5.149e-14 Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 0
Query: 450 DVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVK 507
++ NK GRIGIY D R A IARF KR +R+W+K+I+Y CRK LAD R R+KGRFVK
Sbjct: 514 ELVNKDGRIGIYLPDARRARIARFHAKRAKRIWRKRIKYDCRKKLADSRPRIKGRFVK 571 The following BLAST results are available for this feature:
BLAST of EWM22380.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|