EWM22380.1, cds8307 (CDS) Nannochloropsis gaditana

Overview
NameEWM22380.1
Unique Namecds8307
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:402070..402251 +
Alignment locationKK037248.1:402549..403755 +
Alignment locationKK037248.1:403903..404256 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22380.1
ProductCCT domain protein
Orig transcript idgnl|cribi|Naga_100066g21.10337.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:402070..402251 +
KK037248.1supercontigKK037248.1:402549..403755 +
KK037248.1supercontigKK037248.1:403903..404256 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR010402CCT_domain
Homology
BLAST of EWM22380.1 vs. NCBI_GenBank
Match: gi|585102881|gb|EWM22380.1| (CCT domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1154.81 bits (2986), Expect = 0.000e+0
Identity = 580/580 (100.00%), Postives = 580/580 (100.00%), Query Frame = 0
Query:    1 MILASPAPAATPAAEKAAGAALTRDSSTTVPKAPVAGSSDAQNAPIPAAATPWEVKSVQEWGGLSDTSSNSTSAGSSVAGSVGSVGNSPRPHPPVDEEDLACASDLEMAAAVVLSPPTPGQPSLAPSAAPPGPVSAPAACTVKREASEEMETEDAEAASILSKVLPDMHKLTTTFADARGSIPKKASVQGHGGGSDRAASIGTSREAIGDAGRGSSPGSRRGGAKGYEDLLDCLASLASNRPPVVPAHCRASRMSVDDMDLEQHCRRPNKGSRGPSPFSPSLLAAARGMEDSDEEEEEDGEEAGRYYYATGGAGLGGGGLDGMEVGRGRRPRAASNPEGCDTWRRYGTSGVPVAMDRKGLAKGQPTHASGAAVHDKAGPAAGGSMITFHGGLASTADSLASEGHAAASTLQAGARAAAAASAAASAAAAEAGAGSGAGSILPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVKLPPKEAGEEEGGGGMSWSPSGQALAVIQEGVAETAKSVVDGEEEEEEGEEEEESEEMEKEGPVCRMRRHSICF 580
            MILASPAPAATPAAEKAAGAALTRDSSTTVPKAPVAGSSDAQNAPIPAAATPWEVKSVQEWGGLSDTSSNSTSAGSSVAGSVGSVGNSPRPHPPVDEEDLACASDLEMAAAVVLSPPTPGQPSLAPSAAPPGPVSAPAACTVKREASEEMETEDAEAASILSKVLPDMHKLTTTFADARGSIPKKASVQGHGGGSDRAASIGTSREAIGDAGRGSSPGSRRGGAKGYEDLLDCLASLASNRPPVVPAHCRASRMSVDDMDLEQHCRRPNKGSRGPSPFSPSLLAAARGMEDSDEEEEEDGEEAGRYYYATGGAGLGGGGLDGMEVGRGRRPRAASNPEGCDTWRRYGTSGVPVAMDRKGLAKGQPTHASGAAVHDKAGPAAGGSMITFHGGLASTADSLASEGHAAASTLQAGARAAAAASAAASAAAAEAGAGSGAGSILPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVKLPPKEAGEEEGGGGMSWSPSGQALAVIQEGVAETAKSVVDGEEEEEEGEEEEESEEMEKEGPVCRMRRHSICF
Sbjct:    1 MILASPAPAATPAAEKAAGAALTRDSSTTVPKAPVAGSSDAQNAPIPAAATPWEVKSVQEWGGLSDTSSNSTSAGSSVAGSVGSVGNSPRPHPPVDEEDLACASDLEMAAAVVLSPPTPGQPSLAPSAAPPGPVSAPAACTVKREASEEMETEDAEAASILSKVLPDMHKLTTTFADARGSIPKKASVQGHGGGSDRAASIGTSREAIGDAGRGSSPGSRRGGAKGYEDLLDCLASLASNRPPVVPAHCRASRMSVDDMDLEQHCRRPNKGSRGPSPFSPSLLAAARGMEDSDEEEEEDGEEAGRYYYATGGAGLGGGGLDGMEVGRGRRPRAASNPEGCDTWRRYGTSGVPVAMDRKGLAKGQPTHASGAAVHDKAGPAAGGSMITFHGGLASTADSLASEGHAAASTLQAGARAAAAASAAASAAAAEAGAGSGAGSILPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVKLPPKEAGEEEGGGGMSWSPSGQALAVIQEGVAETAKSVVDGEEEEEEGEEEEESEEMEKEGPVCRMRRHSICF 580          
BLAST of EWM22380.1 vs. NCBI_GenBank
Match: gi|553180920|ref|XP_005853481.1| (hypothetical protein NGA_0445710, partial [Nannochloropsis gaditana CCMP526] >gi|422295581|gb|EKU22880.1| hypothetical protein NGA_0445710, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1030.78 bits (2664), Expect = 0.000e+0
Identity = 520/520 (100.00%), Postives = 520/520 (100.00%), Query Frame = 0
Query:    1 MILASPAPAATPAAEKAAGAALTRDSSTTVPKAPVAGSSDAQNAPIPAAATPWEVKSVQEWGGLSDTSSNSTSAGSSVAGSVGSVGNSPRPHPPVDEEDLACASDLEMAAAVVLSPPTPGQPSLAPSAAPPGPVSAPAACTVKREASEEMETEDAEAASILSKVLPDMHKLTTTFADARGSIPKKASVQGHGGGSDRAASIGTSREAIGDAGRGSSPGSRRGGAKGYEDLLDCLASLASNRPPVVPAHCRASRMSVDDMDLEQHCRRPNKGSRGPSPFSPSLLAAARGMEDSDEEEEEDGEEAGRYYYATGGAGLGGGGLDGMEVGRGRRPRAASNPEGCDTWRRYGTSGVPVAMDRKGLAKGQPTHASGAAVHDKAGPAAGGSMITFHGGLASTADSLASEGHAAASTLQAGARAAAAASAAASAAAAEAGAGSGAGSILPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVKLPPKEAGEEEGGG 520
            MILASPAPAATPAAEKAAGAALTRDSSTTVPKAPVAGSSDAQNAPIPAAATPWEVKSVQEWGGLSDTSSNSTSAGSSVAGSVGSVGNSPRPHPPVDEEDLACASDLEMAAAVVLSPPTPGQPSLAPSAAPPGPVSAPAACTVKREASEEMETEDAEAASILSKVLPDMHKLTTTFADARGSIPKKASVQGHGGGSDRAASIGTSREAIGDAGRGSSPGSRRGGAKGYEDLLDCLASLASNRPPVVPAHCRASRMSVDDMDLEQHCRRPNKGSRGPSPFSPSLLAAARGMEDSDEEEEEDGEEAGRYYYATGGAGLGGGGLDGMEVGRGRRPRAASNPEGCDTWRRYGTSGVPVAMDRKGLAKGQPTHASGAAVHDKAGPAAGGSMITFHGGLASTADSLASEGHAAASTLQAGARAAAAASAAASAAAAEAGAGSGAGSILPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVKLPPKEAGEEEGGG
Sbjct:    1 MILASPAPAATPAAEKAAGAALTRDSSTTVPKAPVAGSSDAQNAPIPAAATPWEVKSVQEWGGLSDTSSNSTSAGSSVAGSVGSVGNSPRPHPPVDEEDLACASDLEMAAAVVLSPPTPGQPSLAPSAAPPGPVSAPAACTVKREASEEMETEDAEAASILSKVLPDMHKLTTTFADARGSIPKKASVQGHGGGSDRAASIGTSREAIGDAGRGSSPGSRRGGAKGYEDLLDCLASLASNRPPVVPAHCRASRMSVDDMDLEQHCRRPNKGSRGPSPFSPSLLAAARGMEDSDEEEEEDGEEAGRYYYATGGAGLGGGGLDGMEVGRGRRPRAASNPEGCDTWRRYGTSGVPVAMDRKGLAKGQPTHASGAAVHDKAGPAAGGSMITFHGGLASTADSLASEGHAAASTLQAGARAAAAASAAASAAAAEAGAGSGAGSILPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVKLPPKEAGEEEGGG 520          
BLAST of EWM22380.1 vs. NCBI_GenBank
Match: gi|299115164|emb|CBN75530.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 120.553 bits (301), Expect = 1.522e-25
Identity = 51/66 (77.27%), Postives = 62/66 (93.94%), Query Frame = 0
Query:  447 KYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVKLPPKE 512
            +Y+D+YNK+GRIGIYTR ER+AIIARF+ KR RRVWKKKIRY+CRKNLADKR+RVKGRFVK+ P++
Sbjct:  380 RYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQ 445          
BLAST of EWM22380.1 vs. NCBI_GenBank
Match: gi|223998708|ref|XP_002289027.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976135|gb|EED94463.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 118.242 bits (295), Expect = 1.751e-24
Identity = 53/78 (67.95%), Postives = 60/78 (76.92%), Query Frame = 0
Query:  434 GSGAGS----ILPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVK 507
            GSG G      LPH L+KY +VYNK+GRIGIYT  ER  II +F  KR RRVW KKIRY+CRKNLAD+R+RVKGRFVK
Sbjct:  369 GSGGGEKGVLTLPHSLSKYKEVYNKNGRIGIYTPAERAVIITKFNAKRARRVWNKKIRYNCRKNLADRRLRVKGRFVK 446          
BLAST of EWM22380.1 vs. NCBI_GenBank
Match: gi|1072223056|gb|OEU07813.1| (hypothetical protein FRACYDRAFT_250436 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 117.857 bits (294), Expect = 2.072e-24
Identity = 49/67 (73.13%), Postives = 60/67 (89.55%), Query Frame = 0
Query:  441 LPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVK 507
            LPH L KY ++YNK+GRIGIYT  ER AIIARF++KR+ R+WKKKIRY+CRKNLAD+R+R+KGRFVK
Sbjct:  355 LPHSLKKYKEIYNKNGRIGIYTPGERAAIIARFQKKRKSRMWKKKIRYNCRKNLADRRLRIKGRFVK 421          
BLAST of EWM22380.1 vs. NCBI_GenBank
Match: gi|397584688|gb|EJK53050.1| (hypothetical protein THAOC_27584 [Thalassiosira oceanica])

HSP 1 Score: 118.627 bits (296), Expect = 2.967e-24
Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = 0
Query:  441 LPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVK 507
            LPH LAKY ++YNK+GRIGIYT  ER AII +F EKR+RRVW KKIRY+CRK+LADKR+RVKGRFVK
Sbjct:  378 LPHSLAKYKEMYNKNGRIGIYTPSERAAIIQKFNEKRRRRVWNKKIRYNCRKSLADKRMRVKGRFVK 444          
BLAST of EWM22380.1 vs. NCBI_GenBank
Match: gi|1210516309|dbj|GAX24807.1| (hypothetical protein FisN_18Lh110 [Fistulifera solaris])

HSP 1 Score: 115.161 bits (287), Expect = 4.262e-24
Identity = 68/159 (42.77%), Postives = 90/159 (56.60%), Query Frame = 0
Query:  441 LPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVKLPPKEAGEEEGGGGMSWSPSGQALAVIQEGVAETAKSVVDGEEEE-----------EEGEEEEESEEME---------KEGPVCRMRRHSIC 579
            LPH L KY  VYNK+GRIGIYT  ER AII R+ +KR RRVW KKIRY+CRK+LAD+R+R+KGRFVK   +E                + LA  QEG  E A   +D +E++           E GE+E+  + +          ++ P  R+RRH+I 
Sbjct:  256 LPHSLGKYKQVYNKNGRIGIYTPAERAAIIDRYHQKRSRRVWNKKIRYNCRKSLADRRLRIKGRFVKRSEQEM-------------LAKQLAQ-QEGSDENA---MDDDEDDGGRSPGEHVSGESGEDEDMQDVLNDPEAGFVPTEDQPYRRLRRHTIT 397          
BLAST of EWM22380.1 vs. NCBI_GenBank
Match: gi|1210523267|dbj|GAX17904.1| (hypothetical protein FisN_18Hh110 [Fistulifera solaris])

HSP 1 Score: 112.849 bits (281), Expect = 2.159e-23
Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 0
Query:  441 LPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVK-----LPPKEAGEEEG 518
            LPH L KY  VYNK+GRIGIYT  ER AII R+ +KR RRVW KKIRY+CRK+LAD+R+R+KGRFVK     +  K+  ++EG
Sbjct:  251 LPHSLGKYKQVYNKNGRIGIYTPAERAAIIDRYHQKRSRRVWNKKIRYNCRKSLADRRLRIKGRFVKRSEQEMLAKQLAQQEG 333          
BLAST of EWM22380.1 vs. NCBI_GenBank
Match: gi|219112871|ref|XP_002186019.1| (CCT motif containing protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582869|gb|ACI65489.1| CCT motif containing protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 109.768 bits (273), Expect = 2.849e-22
Identity = 61/140 (43.57%), Postives = 86/140 (61.43%), Query Frame = 0
Query:  441 LPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVKLPPKEAGEEEGGGGMSWSPSGQ--ALAVIQEGVAETAKSVVDGEEEEEEGEEEEESEEMEKEGPVCRMRRHSI 578
            LPH L KY + YN +GRIGIYT +ER A+I R+++KR RRVW KKIRY CRKNLAD+R+RVKGRFV    K   +E+    +      Q   +A+ ++ VA       +G+E+  +  + E   +   + P  R+RRH+I
Sbjct:  282 LPHSLPKYKEFYN-NGRIGIYTPNERAAVIDRYKDKRCRRVWNKKIRYGCRKNLADRRLRVKGRFV----KRCEQEQLAKLLKLQAEEQESNVALSEDDVA------TNGDEDMPDVNDPEAGFDPTDDQPYRRVRRHTI 410          
BLAST of EWM22380.1 vs. NCBI_GenBank
Match: gi|1210517250|dbj|GAX23885.1| (hypothetical protein FisN_20Hh091 [Fistulifera solaris])

HSP 1 Score: 85.8853 bits (211), Expect = 5.149e-14
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 0
Query:  450 DVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVK 507
            ++ NK GRIGIY  D R A IARF  KR +R+W+K+I+Y CRK LAD R R+KGRFVK
Sbjct:  514 ELVNKDGRIGIYLPDARRARIARFHAKRAKRIWRKRIKYDCRKKLADSRPRIKGRFVK 571          
The following BLAST results are available for this feature:
BLAST of EWM22380.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102881|gb|EWM22380.1|0.000e+0100.00CCT domain protein [Nannochloropsis gaditana][more]
gi|553180920|ref|XP_005853481.1|0.000e+0100.00hypothetical protein NGA_0445710, partial [Nannoch... [more]
gi|299115164|emb|CBN75530.1|1.522e-2577.27conserved unknown protein [Ectocarpus siliculosus][more]
gi|223998708|ref|XP_002289027.1|1.751e-2467.95predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1072223056|gb|OEU07813.1|2.072e-2473.13hypothetical protein FRACYDRAFT_250436 [Fragilario... [more]
gi|397584688|gb|EJK53050.1|2.967e-2476.12hypothetical protein THAOC_27584 [Thalassiosira oc... [more]
gi|1210516309|dbj|GAX24807.1|4.262e-2442.77hypothetical protein FisN_18Lh110 [Fistulifera sol... [more]
gi|1210523267|dbj|GAX17904.1|2.159e-2361.45hypothetical protein FisN_18Hh110 [Fistulifera sol... [more]
gi|219112871|ref|XP_002186019.1|2.849e-2243.57CCT motif containing protein [Phaeodactylum tricor... [more]
gi|1210517250|dbj|GAX23885.1|5.149e-1462.07hypothetical protein FisN_20Hh091 [Fistulifera sol... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8334rna8334Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications