rna8329, rna8329 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8329
Unique Name	rna8329
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2205
Alignment location	KK037248.1:389524..390608 +

Link to JBrowse

Properties


Property Name	Value
Product	cdgsh iron sulfur domain-containing protein 1
Orig transcript id	gnl\|cribi\|Naga_100066g16.10328.mrna
Orig protein id	gnl\|cribi\|Naga_100066g16.10328
Gene	CISD1
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:389524..390608 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CISD1	gene8068	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8329	rna8329-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22371.1	cds8302	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:389524..390608+
coding sequence from alignment at KK037248.1:389524..390608+

mRNA sequence

>rna8329 ID=rna8329|Name=rna8329|organism=Nannochloropsis gaditana|type=mRNA|length=2205bp
ATGCGCCCTCCCATTATCACCATGCGACCTCCCCTTTCCGTCGTCGTCGC
CTTTCTGACCTACTGTGGCGCGTTTTGGTCTCTTACAAACGGATCAGCAT
TTGTGCATGCATTTGTGATGCCATCGTTTCCTTGTGGGCATTCACAGCTC
TTCACGGCTCGAGATTTGTCTCAGCCCAACTTGTATCTCTGGCAGCCACG
GCAGCGTCAGCAGGCACACTTTTCATCCTTCTGGCTTGACCCGACCAGAG
ATACCCCCTTAGAAGAGTGGAACATCTCTGAAGACCACCCAGGCGTCCCA
CCGACGGAAGCAGGGAACCAAGTTGAAGACGATTTTGAGGGAGGGGACGA
GGGAGAGCGCAGAAACGCTGAGTACGGCAGGGGAAGATCTATCGGTGGTG
TAGCCTCCTTGTGCACGGATACCGCGCCTGCAAACGAAATCTACAAGGCT
GCAAACCCTAGCGAAGAGACAAAATTAAGAGCCTCAGAGGACGGAGTTAG
TCGAGGGAAAAAGGACGGGTTCAACGTGTTCAAAACCATCAGCGGGGGCG
GCTTGGGCGGTCGTGGGCGCTTTCGACCGTCCTTCTTCACGCGCAGCAAA
GATACCTTCCCGTCCTGTATGCCCCGCTCTAATCACGTAGAGGGTAGTAG
GAGAGCAAAGGCGCCCAGAATTTCGGCGCCCGTGGGGCCCAGTGGCACGG
CCTCATCGACCTCCACCCAGTCCTCCGCCGGCTCCTCCGCCCCCCTCGTT
TCCATGCCCAATCTCCCTTCGGCGAAACCGGCTTCCTCCCAGAAGAGCAA
GGCACTACAAGGTAGTAGCAGTGCCAACGATTACCTTGACAGCGTTCAGG
CATCCACGTCCCCCGGGAACAACAGTAACATGCAAGTCTTGCTCAGCATG
GTGCAGTCGGACCCGTCCAAGCGCCTCTTGGTCTGGGCGGCCTTTTTGGG
CCTTGGGTGGACCCTCCGGTCCTTTTACGGCATCATCTTGGGCACATTTG
TCTTATCCTACATCGGCTCCTCCGCCGTGCGCTGGAGCGAGGAGAAAGGC
AACGAGCTGGGCGGGCGGCTCAAGCTGCCCCCCCTCCCCCGCCGGTTCTG
GGCCTTGGCCTATGTGGTCCTCGTCCTCAGCAGCTTCGTGAGCTTGACCG
TGGTCACCGTTCCTCGGGTTGTGGGGGAGACGAACTATTTGTCCCTCCTG
ATCGAAAGCGAGAATCCCTACGTCTTTGTCGCGGACGGCGTTCGACGGCT
TCTGGGGCCCGACTTCTCGGGAAAAGTGGAGGCCTTCCTCCTCTCTGTCA
CAGGGGAAGAGGGCCGTGCATTCGCCACGGGCGTGCTCTCTGCCACCTCT
CCCACCTCCTCCTTGTTCTCCGGTCCCTCCGCCTCGTCCTCGACCTCCTC
TGCCGCCGCCGCCGCCTCCGTGGCTCGGAAGCGCTTGAGCCAGCCCCTCA
ACGGCCTCCCCCTCGAAGCCTGGACCCCGGCTCGCTCCAGCCGCTTCGCC
AAGCTCATGGAGTATTCCTTGAAAGGTTACATCAAACAAGCCTATTTCGT
GACCCAGAAGCTCCTCACCTCCAGCACCAAGCTCGTCTACAAGGGCCTCC
TCTCCCTCCTCTTCTCCTTCATGATCATCTGGGACCTGCCCCGCCTGGCC
CGAGGCACCCAGCGACTGGCACGCTCCCGCTTCGGCTACGCCTACTCGGT
TCTAGCGCCTCAGCTTACCGCCTTTGGGCGCCTGGTGGGGCAGAGTTTCG
AGGTGCAATCCATCATCGCGCTAGTCAACACCCTGCTCACCACCCTGGGC
CTTGTCTTCCTGAAAATCCCGGGCTACGGCTTCATGAGCCTGGTCGTGCT
CATCACCTCCTTCATCCCCGTCTTCGGCGTCTTTCTCTCCACGCTGCCTA
TGGCCCTGGTCGCGGTGAGCGAGTACGGGGTGGGGAAGATGATCGACGTG
ATCCTGATGGTCATCGGCGTCCACGTGGTGGAGGCCTATTGCCTCTCCCC
CCTCATCTACTCCGCGACCGTGAAACTCCACCCGGTCCTGATCGTGGCTG
CCCTTTACATGATGGAGCACCTGGCGGGGCTGCAGGGGGTCTTTCTGGCG
GTGCCTGTCACCATGTTTGTGATCCGGCAAGTACTGGGTATCCCTGCGGA
CGGGCATGGGAAGGGGAGTCTGGAAGCGAGGGAGGGGCAGGTGGTGCAAG
CCTAG

protein sequence of rna8329

>rna8329-protein ID=rna8329-protein|Name=rna8329|organism=Nannochloropsis gaditana|type=polypeptide|length=210bp
MKCVLDTQRSSWLLLLIPHETPHTRTSFLLRFFFLRQVDSALTGKMAAEL
FKALQGHEVVMAAIVAFLVTAFMILTGRKGGQHVNPGIKKDQPKVVDSFT
MKDIEDLMKKDKNGVVAICRCWRSKNFPLCDGSHTAFNKTCGDNVGPADR
SLENEYGAEERRGLSSRAFDGKETGSHTLEDPSRGSVCREEGQRMRVREC
GPERWTGPGC

mRNA from alignment at KK037248.1:389524..390608+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8329 ID=rna8329|Name=rna8329|organism=Nannochloropsis gaditana|type=mRNA|length=1085bp|location=Sequence derived from alignment at KK037248.1:389524..390608+ (Nannochloropsis gaditana)
ATGAAATGTGTGCTTGACACGCAACGGAGTAGctggttgctgctgctgat
ccCACACGAGACTCCTCACACGCGTACGTCATTCCTTTTAAGGTTTTTTT
TTTTGCGACAGGTCGATTCTGCTTTGACAGGGAAAATGGCCGCAGAGCTC
TTTAAAGCCTTGCAAGGACATGAAGTTGTAATGGCAGCCATTGTTGCATT
CCTTGTGACGGCATTTATGATCTtgacgggaaggaagggaggccaACATG
TGAATCCGGGTGAGTTTCGAGACGCAAGAGGGTTTGCAATTGGTCCTTGA
TAATAATCCACACACTCATGTCTTGACAGGGATCAAGAAAGATCAGCCTA
AGGTTGTAGATTCCTTTACGATGAAAGGTGCGTGGGCGAGGGAACCAGCt
gtgaaaaaaaaatagaTATGTCCATAGCCTCCACGTGGATCATCAATCTG
GTCAGAGCATGGCTTGCGCTTCTCAAAAGATGCTGGGCTCAGTCGTCCCT
TTCCTCACGCGGGAAAAGCTATCAGATATTACAACTTTATTTTCAAGGCA
GACATAATGCATGCAAATGTCGAGGAGCGGCATGGAACATGACATGGCGC
ATCTCCCTGGGCAAGACTCGTACACGATCCTCACCAGTCTCTTTGGCAAC
TCTGCTCCCCATCCGATTTCCTTCCCGCAGACATCGAGGACCTGATGAAA
AAAGACAAGAACGGCGTCGTCGCGATTTGCCGGTGCTGGCGGAGCAAAAA
CTTCCCGCTCTGCGACGGCTCCCACACGGCTTTCAACAAGACTTGCGGGG
ACAACGTGGGGCCTGCTGTGCTTAAGAAATAGGAATCTAAGGAATCTGAA
AGAGCCCTAAGGGCATAGGTAACCTATGAAAATTGTCTGAATGAAGGATA
GAAGCCTGGAGAATGAGTATGGAGCGGAGGAGCGCCGAGGCCTGTCAAGT
AGGGCGTTCGACGGCAAGGAGACCGGGTCCCACACCCTCGAAGATCCCTC
CAGAGGGTCTGTGtgcagggaagaggggcaacGAATGAGAGTGCGAGAAT
GCGGTCCAGAGAGGTGGACAGGGCCAGGGTGTTAA

Coding sequence (CDS) from alignment at KK037248.1:389524..390608+

>rna8329 ID=rna8329|Name=rna8329|organism=Nannochloropsis gaditana|type=CDS|length=2532bp|location=Sequence derived from alignment at KK037248.1:389524..390608+ (Nannochloropsis gaditana)
ATGAAATGTGTGCTTGACACGCAACGGAGTAGctggttgctgctgctgat
ccCACACGAGACTCCTCACACGCGTACGTCATTCCTTTTAAGGTTTTTTT
TTTTGCGACAGGTCGATTCTGCTTTGACAGGGAAAATGGCCGCAGAGCTC
TTTAAAGCCTTGCAAGGACATGAAGTTGTAATGGCAGCCATTGTTGCATT
CCTTGTGACGGCATTTATGATCTtgacgggaaggaagggaggccaACATG
TGAATCCGGGGATCAAGAAAGATCAGCCTAAGGTTGTAGATTCCTTTACG
ATGAAAGACATCGAGGACCTGATGAAAAAAGACAAGAACGGCGTCGTCGC
GATTTGCCGGTGCTGGCGGAGCAAAAACTTCCCGCTCTGCGACGGCTCCC
ACACGGCTTTCAACAAGACTTGCGGGGACAACGTGGGGCCTGCTGATAGA
AGCCTGGAGAATGAGTATGGAGCGGAGGAGCGCCGAGGCCTGTCAAGTAG
GGCGTTCGACGGCAAGGAGACCGGGTCCCACACCCTCGAAGATCCCTCCA
GAGGGTCTGTGtgcagggaagaggggcaacGAATGAGAGTGCGAGAATGC
GGTCCAGAGAGGTGGACAGGGCCAGGGTGTTAAATGAAATGTGTGCTTGA
CACGCAACGGAGTAGctggttgctgctgctgatccCACACGAGACTCCTC
ACACGCGTACGTCATTCCTTTTAAGGTTTTTTTTTTTGCGACAGGTCGAT
TCTGCTTTGACAGGGAAAATGGCCGCAGAGCTCTTTAAAGCCTTGCAAGG
ACATGAAGTTGTAATGGCAGCCATTGTTGCATTCCTTGTGACGGCATTTA
TGATCTtgacgggaaggaagggaggccaACATGTGAATCCGGGGATCAAG
AAAGATCAGCCTAAGGTTGTAGATTCCTTTACGATGAAAGACATCGAGGA
CCTGATGAAAAAAGACAAGAACGGCGTCGTCGCGATTTGCCGGTGCTGGC
GGAGCAAAAACTTCCCGCTCTGCGACGGCTCCCACACGGCTTTCAACAAG
ACTTGCGGGGACAACGTGGGGCCTGCTGATAGAAGCCTGGAGAATGAGTA
TGGAGCGGAGGAGCGCCGAGGCCTGTCAAGTAGGGCGTTCGACGGCAAGG
AGACCGGGTCCCACACCCTCGAAGATCCCTCCAGAGGGTCTGTGtgcagg
gaagaggggcaacGAATGAGAGTGCGAGAATGCGGTCCAGAGAGGTGGAC
AGGGCCAGGGTGTTAAATGAAATGTGTGCTTGACACGCAACGGAGTAGct
ggttgctgctgctgatccCACACGAGACTCCTCACACGCGTACGTCATTC
CTTTTAAGGTTTTTTTTTTTGCGACAGGTCGATTCTGCTTTGACAGGGAA
AATGGCCGCAGAGCTCTTTAAAGCCTTGCAAGGACATGAAGTTGTAATGG
CAGCCATTGTTGCATTCCTTGTGACGGCATTTATGATCTtgacgggaagg
aagggaggccaACATGTGAATCCGGGGATCAAGAAAGATCAGCCTAAGGT
TGTAGATTCCTTTACGATGAAAGACATCGAGGACCTGATGAAAAAAGACA
AGAACGGCGTCGTCGCGATTTGCCGGTGCTGGCGGAGCAAAAACTTCCCG
CTCTGCGACGGCTCCCACACGGCTTTCAACAAGACTTGCGGGGACAACGT
GGGGCCTGCTGATAGAAGCCTGGAGAATGAGTATGGAGCGGAGGAGCGCC
GAGGCCTGTCAAGTAGGGCGTTCGACGGCAAGGAGACCGGGTCCCACACC
CTCGAAGATCCCTCCAGAGGGTCTGTGtgcagggaagaggggcaacGAAT
GAGAGTGCGAGAATGCGGTCCAGAGAGGTGGACAGGGCCAGGGTGTTAAA
TGAAATGTGTGCTTGACACGCAACGGAGTAGctggttgctgctgctgatc
cCACACGAGACTCCTCACACGCGTACGTCATTCCTTTTAAGGTTTTTTTT
TTTGCGACAGGTCGATTCTGCTTTGACAGGGAAAATGGCCGCAGAGCTCT
TTAAAGCCTTGCAAGGACATGAAGTTGTAATGGCAGCCATTGTTGCATTC
CTTGTGACGGCATTTATGATCTtgacgggaaggaagggaggccaACATGT
GAATCCGGGGATCAAGAAAGATCAGCCTAAGGTTGTAGATTCCTTTACGA
TGAAAGACATCGAGGACCTGATGAAAAAAGACAAGAACGGCGTCGTCGCG
ATTTGCCGGTGCTGGCGGAGCAAAAACTTCCCGCTCTGCGACGGCTCCCA
CACGGCTTTCAACAAGACTTGCGGGGACAACGTGGGGCCTGCTGATAGAA
GCCTGGAGAATGAGTATGGAGCGGAGGAGCGCCGAGGCCTGTCAAGTAGG
GCGTTCGACGGCAAGGAGACCGGGTCCCACACCCTCGAAGATCCCTCCAG
AGGGTCTGTGtgcagggaagaggggcaacGAATGAGAGTGCGAGAATGCG
GTCCAGAGAGGTGGACAGGGCCAGGGTGTTAA

Synonyms

Publications