EWM22371.1, cds8302 (CDS) Nannochloropsis gaditana

Overview
NameEWM22371.1
Unique Namecds8302
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:389524..389782 +
Alignment locationKK037248.1:389853..389900 +
Alignment locationKK037248.1:390204..390340 +
Alignment locationKK037248.1:390420..390608 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22371.1
Productcdgsh iron sulfur domain-containing protein 1
Orig transcript idgnl|cribi|Naga_100066g16.10328.mrna
GeneCISD1
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:389524..389782 +
KK037248.1supercontigKK037248.1:389853..389900 +
KK037248.1supercontigKK037248.1:390204..390340 +
KK037248.1supercontigKK037248.1:390420..390608 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0016020membrane
GO:0043231intracellular membrane-bounded organelle
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:00515372 iron, 2 sulfur cluster binding
Vocabulary: INTERPRO
TermDefinition
IPR018967FeS-contain_CDGSH-typ
IPR006622FeS-contain_CDGSH-typ_subfam
Homology
BLAST of EWM22371.1 vs. NCBI_GenBank
Match: gi|585102872|gb|EWM22371.1| (cdgsh iron sulfur domain-containing protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 438.343 bits (1126), Expect = 9.532e-156
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0
Query:    1 MKCVLDTQRSSWLLLLIPHETPHTRTSFLLRFFFLRQVDSALTGKMAAELFKALQGHEVVMAAIVAFLVTAFMILTGRKGGQHVNPGIKKDQPKVVDSFTMKDIEDLMKKDKNGVVAICRCWRSKNFPLCDGSHTAFNKTCGDNVGPADRSLENEYGAEERRGLSSRAFDGKETGSHTLEDPSRGSVCREEGQRMRVRECGPERWTGPGC 210
            MKCVLDTQRSSWLLLLIPHETPHTRTSFLLRFFFLRQVDSALTGKMAAELFKALQGHEVVMAAIVAFLVTAFMILTGRKGGQHVNPGIKKDQPKVVDSFTMKDIEDLMKKDKNGVVAICRCWRSKNFPLCDGSHTAFNKTCGDNVGPADRSLENEYGAEERRGLSSRAFDGKETGSHTLEDPSRGSVCREEGQRMRVRECGPERWTGPGC
Sbjct:    1 MKCVLDTQRSSWLLLLIPHETPHTRTSFLLRFFFLRQVDSALTGKMAAELFKALQGHEVVMAAIVAFLVTAFMILTGRKGGQHVNPGIKKDQPKVVDSFTMKDIEDLMKKDKNGVVAICRCWRSKNFPLCDGSHTAFNKTCGDNVGPADRSLENEYGAEERRGLSSRAFDGKETGSHTLEDPSRGSVCREEGQRMRVRECGPERWTGPGC 210          
BLAST of EWM22371.1 vs. NCBI_GenBank
Match: gi|1129212604|gb|OLQ13669.1| (Phospho-2-dehydro-3-deoxyheptonate aldolase [Symbiodinium microadriaticum])

HSP 1 Score: 94.7449 bits (234), Expect = 5.168e-19
Identity = 39/64 (60.94%), Postives = 45/64 (70.31%), Query Frame = 0
Query:   84 VNPGIKKDQPKVVDSFTMKDIEDLMKKDKNGVVAICRCWRSKNFPLCDGSHTAFNKTCGDNVGP 147
            VNPGI K  PKV    T+KDIED + K  +G VA+CRCWRS  FP CDGSH  +N+ CGDN GP
Sbjct:  767 VNPGIDKASPKVATVMTVKDIEDALSKSSSGKVALCRCWRSSKFPFCDGSHGKYNEACGDNTGP 830          
BLAST of EWM22371.1 vs. NCBI_GenBank
Match: gi|593721164|ref|XP_007106861.1| (PREDICTED: CDGSH iron-sulfur domain-containing protein 1 isoform X1 [Physeter catodon])

HSP 1 Score: 83.1889 bits (204), Expect = 4.940e-17
Identity = 40/85 (47.06%), Postives = 48/85 (56.47%), Query Frame = 0
Query:   63 AIVAFLVTAFMILTGRKGGQHVNPGIKKDQPKVVDSFTMKDIEDLMKKDKNGVVAICRCWRSKNFPLCDGSHTAFNKTCGDNVGP 147
            A V +L      +   +    VNP I+KD PKVV +F M+D+ D            CRCWRSK FPLCDGSHT  N+  GDNVGP
Sbjct:   47 AAVGYLAYKRFYVKDHRNKSMVNPHIQKDNPKVVHAFDMEDLGD--------KAVYCRCWRSKKFPLCDGSHTKHNEETGDNVGP 123          
BLAST of EWM22371.1 vs. NCBI_GenBank
Match: gi|593721171|ref|XP_007106864.1| (PREDICTED: CDGSH iron-sulfur domain-containing protein 1 isoform X4 [Physeter catodon])

HSP 1 Score: 82.4185 bits (202), Expect = 5.105e-17
Identity = 40/85 (47.06%), Postives = 48/85 (56.47%), Query Frame = 0
Query:   63 AIVAFLVTAFMILTGRKGGQHVNPGIKKDQPKVVDSFTMKDIEDLMKKDKNGVVAICRCWRSKNFPLCDGSHTAFNKTCGDNVGP 147
            A V +L      +   +    VNP I+KD PKVV +F M+D+ D            CRCWRSK FPLCDGSHT  N+  GDNVGP
Sbjct:   22 AAVGYLAYKRFYVKDHRNKSMVNPHIQKDNPKVVHAFDMEDLGDK--------AVYCRCWRSKKFPLCDGSHTKHNEETGDNVGP 98          
BLAST of EWM22371.1 vs. NCBI_GenBank
Match: gi|527271815|ref|XP_005153767.1| (PREDICTED: CDGSH iron-sulfur domain-containing protein 1 [Melopsittacus undulatus])

HSP 1 Score: 82.4185 bits (202), Expect = 5.834e-17
Identity = 44/87 (50.57%), Postives = 54/87 (62.07%), Query Frame = 0
Query:   62 AAIVAFLVTAFMILTGRKGGQH-VNPGIKKDQPKVVDSFTMKDIEDLMKKDKNGVVAICRCWRSKNFPLCDGSHTAFNKTCGDNVGP 147
            AA+V +L  A+  L+  K  +  VNP I+KD PKVV +F M+D+ D            CRCWRSK FPLCDGSHT  N+  GDNVGP
Sbjct:   23 AAVVGYL--AYRFLSKDKCSKAMVNPHIQKDNPKVVHAFDMEDLGDK--------AVYCRCWRSKKFPLCDGSHTKHNEETGDNVGP 99          
BLAST of EWM22371.1 vs. NCBI_GenBank
Match: gi|466075832|ref|XP_004283415.1| (PREDICTED: CDGSH iron-sulfur domain-containing protein 1 [Orcinus orca] >gi|470653983|ref|XP_004329753.1| PREDICTED: CDGSH iron-sulfur domain-containing protein 1 isoform X2 [Tursiops truncatus] >gi|548522264|ref|XP_005698204.1| PREDICTED: CDGSH iron-sulfur domain-containing protein 1 isoform X2 [Capra hircus] >gi|594656018|ref|XP_007176385.1| PREDICTED: CDGSH iron-sulfur domain-containing protein 1 [Balaenoptera acutorostrata scammoni] >gi|602730954|ref|XP_007450884.1| PREDICTED: CDGSH iron-sulfur domain-containing protein 1-like [Lipotes vexillifer])

HSP 1 Score: 82.4185 bits (202), Expect = 6.120e-17
Identity = 40/85 (47.06%), Postives = 48/85 (56.47%), Query Frame = 0
Query:   63 AIVAFLVTAFMILTGRKGGQHVNPGIKKDQPKVVDSFTMKDIEDLMKKDKNGVVAICRCWRSKNFPLCDGSHTAFNKTCGDNVGP 147
            A V +L      +   +    VNP I+KD PKVV +F M+D+ D            CRCWRSK FPLCDGSHT  N+  GDNVGP
Sbjct:   22 AAVGYLAYKRFYVKDHRNKSMVNPHIQKDNPKVVHAFDMEDLGDK--------AVYCRCWRSKKFPLCDGSHTKHNEETGDNVGP 98          
BLAST of EWM22371.1 vs. NCBI_GenBank
Match: gi|664719919|ref|XP_008517000.1| (PREDICTED: CDGSH iron-sulfur domain-containing protein 1 isoform X2 [Equus przewalskii])

HSP 1 Score: 82.0333 bits (201), Expect = 7.656e-17
Identity = 39/85 (45.88%), Postives = 48/85 (56.47%), Query Frame = 0
Query:   63 AIVAFLVTAFMILTGRKGGQHVNPGIKKDQPKVVDSFTMKDIEDLMKKDKNGVVAICRCWRSKNFPLCDGSHTAFNKTCGDNVGP 147
            A++ +L          +    VNP I+KD PKVV +F M+D+ D            CRCWRSK FPLCDGSHT  N+  GDNVGP
Sbjct:   22 AVIGYLAYKRFYSKDHRNKSMVNPHIQKDNPKVVHAFDMEDLGDK--------AVYCRCWRSKKFPLCDGSHTKHNEETGDNVGP 98          
BLAST of EWM22371.1 vs. NCBI_GenBank
Match: gi|556728963|ref|XP_005960207.1| (PREDICTED: CDGSH iron-sulfur domain-containing protein 1-like [Pantholops hodgsonii])

HSP 1 Score: 82.0333 bits (201), Expect = 7.656e-17
Identity = 39/85 (45.88%), Postives = 48/85 (56.47%), Query Frame = 0
Query:   63 AIVAFLVTAFMILTGRKGGQHVNPGIKKDQPKVVDSFTMKDIEDLMKKDKNGVVAICRCWRSKNFPLCDGSHTAFNKTCGDNVGP 147
            A + +L      +   +    VNP I+KD PKVV +F M+D+ D            CRCWRSK FPLCDGSHT  N+  GDNVGP
Sbjct:   22 AAIGYLAYKRFYVKDHRNKSMVNPHIQKDNPKVVHAFDMEDLGDK--------AVYCRCWRSKKFPLCDGSHTKHNEETGDNVGP 98          
BLAST of EWM22371.1 vs. NCBI_GenBank
Match: gi|593721167|ref|XP_007106862.1| (PREDICTED: CDGSH iron-sulfur domain-containing protein 1 isoform X2 [Physeter catodon] >gi|593721169|ref|XP_007106863.1| PREDICTED: CDGSH iron-sulfur domain-containing protein 1 isoform X3 [Physeter catodon])

HSP 1 Score: 82.0333 bits (201), Expect = 8.296e-17
Identity = 40/85 (47.06%), Postives = 48/85 (56.47%), Query Frame = 0
Query:   63 AIVAFLVTAFMILTGRKGGQHVNPGIKKDQPKVVDSFTMKDIEDLMKKDKNGVVAICRCWRSKNFPLCDGSHTAFNKTCGDNVGP 147
            A V +L      +   +    VNP I+KD PKVV +F M+D+ D            CRCWRSK FPLCDGSHT  N+  GDNVGP
Sbjct:   27 AAVGYLAYKRFYVKDHRNKSMVNPHIQKDNPKVVHAFDMEDLGDK--------AVYCRCWRSKKFPLCDGSHTKHNEETGDNVGP 103          
BLAST of EWM22371.1 vs. NCBI_GenBank
Match: gi|77404223|ref|NP_001029229.1| (CDGSH iron-sulfur domain-containing protein 1 [Bos taurus] >gi|555967735|ref|XP_005895912.1| PREDICTED: CDGSH iron-sulfur domain-containing protein 1 isoform X3 [Bos mutus] >gi|556733846|ref|XP_005962564.1| PREDICTED: CDGSH iron-sulfur domain-containing protein 1 isoform X4 [Pantholops hodgsonii] >gi|742116948|ref|XP_010837944.1| PREDICTED: CDGSH iron-sulfur domain-containing protein 1 [Bison bison bison] >gi|803327129|ref|XP_012021727.1| PREDICTED: CDGSH iron-sulfur domain-containing protein 1 isoform X2 [Ovis aries musimon] >gi|110825757|sp|Q3ZBU2.1|CISD1_BOVIN RecName: Full=CDGSH iron-sulfur domain-containing protein 1; AltName: Full=MitoNEET >gi|73587067|gb|AAI03106.1| CDGSH iron sulfur domain 1 [Bos taurus] >gi|296472891|tpg|DAA15006.1| TPA: CDGSH iron sulfur domain-containing protein 1 [Bos taurus])

HSP 1 Score: 82.0333 bits (201), Expect = 9.081e-17
Identity = 39/85 (45.88%), Postives = 48/85 (56.47%), Query Frame = 0
Query:   63 AIVAFLVTAFMILTGRKGGQHVNPGIKKDQPKVVDSFTMKDIEDLMKKDKNGVVAICRCWRSKNFPLCDGSHTAFNKTCGDNVGP 147
            A + +L      +   +    VNP I+KD PKVV +F M+D+ D            CRCWRSK FPLCDGSHT  N+  GDNVGP
Sbjct:   22 AAIGYLAYKRFYVKDHRNKSMVNPHIQKDNPKVVHAFDMEDLGDK--------AVYCRCWRSKKFPLCDGSHTKHNEETGDNVGP 98          
The following BLAST results are available for this feature:
BLAST of EWM22371.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102872|gb|EWM22371.1|9.532e-156100.00cdgsh iron sulfur domain-containing protein 1 [Nan... [more]
gi|1129212604|gb|OLQ13669.1|5.168e-1960.94Phospho-2-dehydro-3-deoxyheptonate aldolase [Symbi... [more]
gi|593721164|ref|XP_007106861.1|4.940e-1747.06PREDICTED: CDGSH iron-sulfur domain-containing pro... [more]
gi|593721171|ref|XP_007106864.1|5.105e-1747.06PREDICTED: CDGSH iron-sulfur domain-containing pro... [more]
gi|527271815|ref|XP_005153767.1|5.834e-1750.57PREDICTED: CDGSH iron-sulfur domain-containing pro... [more]
gi|466075832|ref|XP_004283415.1|6.120e-1747.06PREDICTED: CDGSH iron-sulfur domain-containing pro... [more]
gi|664719919|ref|XP_008517000.1|7.656e-1745.88PREDICTED: CDGSH iron-sulfur domain-containing pro... [more]
gi|556728963|ref|XP_005960207.1|7.656e-1745.88PREDICTED: CDGSH iron-sulfur domain-containing pro... [more]
gi|593721167|ref|XP_007106862.1|8.296e-1747.06PREDICTED: CDGSH iron-sulfur domain-containing pro... [more]
gi|77404223|ref|NP_001029229.1|9.081e-1745.88CDGSH iron-sulfur domain-containing protein 1 [Bos... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8329rna8329Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications