rna8325, rna8325 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8325
Unique Name	rna8325
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3551
Alignment location	KK037248.1:378839..380120 +

Link to JBrowse

Properties


Property Name	Value
Product	immutans protein
Orig transcript id	gnl\|cribi\|Naga_100066g11.10319.mrna
Orig protein id	gnl\|cribi\|Naga_100066g11.10319
Gene	PTOX
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:378839..380120 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
PTOX	gene8064	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8325	rna8325-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22362.1	cds8298	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:378839..380120+
coding sequence from alignment at KK037248.1:378839..380120+

mRNA sequence

>rna8325 ID=rna8325|Name=rna8325|organism=Nannochloropsis gaditana|type=mRNA|length=3551bp
GAAGCAACCAGCTTTCTTGCCGCCGACGCCTCATCACTCCCCGCCCCCGC
GACTTTCTTCCATATCGTCACCTGCTTATCCCCAGGATGGACCCACATGC
AACATATATCCCTTTTGTCCACCCATTTTCGTCTCAACTACGTAGGTCGT
GTTAGCGCGCTTTCCCCTTATCACTACGTGTGGAAGAAACGCGGCTTGCT
CGGCGCGAAGACTCGAGAGTGGCGTTTGAAAACATTCAAACCTAAAGATC
ATGTCAGAGGCCCGAAATGGCAACGACACGCCCATCTCGTCCCACTTCAT
GTCATTTGCTGGAGAATCCGAGGAAAACTGGGGGGCAGACGTAGCTTCCC
GTCACATGGATGCAGAAGCGGAGCATCAGCAAGAGGAAGCAAGACAGCAG
CTAGGACAGACAACAGAGCAAGCGGACGATGCGACTGTCAGCGACGTCGC
GACAAGCGATGCCATCCAGGGAGACCACGAGGGCAAATCTGGTGAGGATG
ATCGTGGGCTGGGCTCCTATGTTGGCGTCGAGGGCGAGGGAGATGGCAGG
CCGAGAGACATGGACAGATATATGGAGGGGACGGGCGGGATAGGGGAAGG
CGACGGACCACGGCCGCAGCCGGAACCCGCACGGCCTGAAGAGAGGGAAG
ACGGGCAGCGCCAAGTAGAGTACGGGGCGTCAAAAATGGAGAAGCCGCCA
GCGCAGGGATTGCCCCAGCTCGATGGTGGAGGGCAGCAGGAGGAGGAGGC
GGAAGCACGCCCGGACGATCAACGTGCGCCATTCCAAGAGCCAGGACAAG
GGGGCTCGGAGGCAGGCGCCGTAGTCCGGCAAGAGGGGTCGGAGGAGAGG
GGGGAGAGGATGCAGCCCTACGGCCAGCGCCAAGAGGCACCCCCAGTGGT
CGCGTACACGGGCAGTGACGAGAATGACGTGGAGGACTCTGAGGTGGCGC
GGGCCACGAAAAAAGAGGACATGGGACCAGGAAGTGACGCCGAGGAAGGG
CATGGAGAAGGTGTGGCGCTGGATGGCTCGAGGGGGCCAGGAGCTGGGCA
AGGCGCGGCGCCTCCACCCTCCTCCCTCTCGGTCCCCCGGCCCATCAGCA
GCACGCTCAGCAAGGGGGAAAGCATGGGGCCCGTCAACGTGCTGTGGGAC
GCGCAGCAAACACAAGCGTCTGTGGCCCCCGCGGCCCCGCCTTCTCTGCC
CGCCCGCTCCGCCACCGATGACTCCGCCCCGCCCCTCCAAAGCGTACCCG
GAGGAAGGCTCCTCAAGCCCGAGGTCGGGCTCCCGGTCGTCCCGTCCCAG
GTGGCCTCCCTCCCGCCCTCAACATCCTCTCAGGTCACACCCTCCCAGCC
CCCCACCCTCCCCGCCTACGGCTCCAATGTGACCACCATGGACGGGGTGG
CCCCCGGGTGCAACTGCAAACGCAGCCGGTGCCTGAAATTGTACTGCCAG
TGCTTCGCCGCCCAGGCGTTCTGCATTCCCTCTTGCAATTGTCAGAACTG
TTTGAACACGGCAGGTCAGAACCATCTGAGGGCGGAGGCAATTCGGCAAA
TCATGGAGCGTAACCCCAACGCCTTCCAGACCAAGTTCCGGCCGAACGGA
GAGGACGCTGTGCATAAGATGGGCTGCAAATGCCGCAAGTCCGCCTGCCT
AAAGAAATACTGCGAGTGTTTCAACGCCGGGGCCCGGTGCTCCGACAAGT
GTTCCTGCGTAGGCTGTCAGAATGTGGCAGGCCTGGGGCGCCCCTACGAG
GAAGCAGTTATGGCGGCCCGTCGAGGGGCCACAGCGGCGCGGCAAGCGGC
CCAGCAAGTGGGACAAAACCCGGCTTTGGCCACGCCCCAGCCCCACATGA
TGGCTTCCATGGTAGCTGCTGCCCTGCGCCAGCAGCAACAGCAGCAGGTG
CTGCCGGAGGTGACGGGGGAGGGAGTCGGCGGAGGCGGGGGTGTGAAGGA
GCGTGGATCCGGGGGGGGGGGCTCCTCCCCGTCCTCCAAGCGCCGACGGA
GCGGCAGCAGCGGGGCGGTCCCGGCGTTGGGAAGCAACCAGGGGCTCGCC
GACCAACAAATGCCCTTCTTTCACCGGTCGCTCATGTCCCCAACCCCCAC
CAGTCAGCGGACGTCGCCCCTCCAAGGACATCCGGCCCAGGCAGGGCAGC
CGGACTTCTCCGCGCAGGGGCTCTTCTCCCTCCCTCCCGGCCTCCAACCC
CACCACAGCCCGCATCCAGGGCTCCTGCCCTTCTTCTCCCCTGGACAACC
CGTGCCCCCGGGCTTCTTTGAGCAGCACGCCTTACTGGCCTCGCAAAACC
TACAACAACACCAACAGCAACAACAGCATCAGCAGCATCAGCAGCAGCTG
GAATTCATTCAGCGGCAACAGGCGCAAGCACAAGCGCAATTTTTCCAGCA
ACTGGCTGCCCAACAGCAACAACAGCAGCAACAAATGCAACAACATCCCC
TTCACCAGTCCCTCTCGCCCACGCAGCTCCTGTTGTTGCAAGCTCAGCAA
CAGCAGCAGCTCCTACAGCAACAGCAAGCGGCCGGAGGAGGGGGAGGAGC
GGGAGGGAGGGGGCAAGGGAAATCGGGGAAGAAGTCGTCGGAAGTGTCCG
GCGGGGACGATCTGCAGGAGATGGTACAAGCCGCGGAAGATTTGGCGTTC
TTGAAGGGCTCGAGTGGGCCTGGGAGTAAAAATCACGCGGAGGTGGAAGC
ACAATTCGCGCAAGCCCAACAACAGCAGCAGCAACAACAAGGAGCACAAC
AGCCTCAGCCGCCACAAGATCAAACGCAGCAGCCGCAGCAACATTACATG
GCATTTGCCGCGGCGGCGGCGGCATCAGGAGGGGGTGGTGGAGGAGGAGG
TGCAGGGGGAGGAGCCGGGGGAGGTCGGCCAGGACAAGGGCAGCCCTTCT
TTGGCCAGCAAGTTGCGTTTCCCGGGAATCCATTCCTTTCGGGAAGCGTC
CCTTCCCAACAGCTGGTGGCGCCACAATTTTTGGATCCTGCGCAAGCCGC
GCATATGGCAGCCATGTATGCACAGATGCAACAGTTTCAAGGGGGGGGTG
GGGGGGAAGTGGCCGATGGGAAGAAGTCTCCAGGTGCTGGGCAGCACGAA
ACCGTGTGAGAATTCGTGTGAGAGAGGGATGGGTAAGAAACGGAGGGAAA
CACTTGCTGCCTGGAGGCCAGATGTCGCGGCGTTTGCGATCATGCGCGTT
CTTCTCCTCTGGACCCTTCCCTTGGACTGAGCAATACCGACGTGCACGGT
GGGAAGCGGAACGCTTATCTAATCAGCCACGCAGGACAGACTTCTTCTAG
AAGGCGCGAGCTTACCAAGTGGGAGAGGATGAGCTGTTGCGTGGGTGTGC
AACAAAGACCGGGCGCTAGCACGGACAGTGGGAGCAACACAGCCTACGGG
TCATTCAGAGTGGCTTAGAAGAACGCCACGAAGTTATATTGGCACACCGC
AGCGATGGTGGCCGCTCCCCTTTGGGGGTCATGCCAAGGCCAGATACACG
AATCAATGTGCTCACAGACATGGGTAAAAAAGAAACACAGAATCGATTCG
C

protein sequence of rna8325

>rna8325-protein ID=rna8325-protein|Name=rna8325|organism=Nannochloropsis gaditana|type=polypeptide|length=383bp
MQEPKHAYRGTPLLISLLMFSMLGLSLAKGPKSVSPPGLPGFLHFPSSAS
SSLGALRSPGPSASLSKCPSIVEHREGVVSAAGKDEDSQERKPQGLKMKN
NGGSTSKGRLHELPIFKSMAANQDGELQRDNSDSSEQAKVSAASSYVPGG
RVPAVVAEANKAIVSSIKDALVAVYGDRHYARFHALETIARVPYFAYTSV
LHLYETLGWRRRADLMKIHFAESWNELHHLLIMEELGGNAEWLDRLVAVH
LAFFYYWMAIALYMASPETAYNLNEMVERHAYDTYDKFLETHEEELKALP
PPQIAKEYYQTGDLYMFDEFHTNSPAERRRPKIESLYDVFVNIRNDEREH
FMTMAVMQGHSGDAGIVSPNTLDPLNNPRRGKD

mRNA from alignment at KK037248.1:378839..380120+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8325 ID=rna8325|Name=rna8325|organism=Nannochloropsis gaditana|type=mRNA|length=1282bp|location=Sequence derived from alignment at KK037248.1:378839..380120+ (Nannochloropsis gaditana)
ATGCAAGAACCCAAGCACGCTTACAGAGGCACTCCTCTTCTCATTTCACT
ACTAATGTTCTCGATGCTCGGTCTGTCCTTGGCAAAGGGCCCCAAGTCCG
tgtccccccccggcctcccgggcttcctccattttccctcctcggcaTCT
TCTTCTCTTGGCGCTCTTCGCTCTCCGGGGCCGTCCGCGTCGTTGTCGAA
ATGTCCTTCAATCGTGGAGCACCGCGAGGGGGTAGTTTCAGCGGCGGGAA
AGGACGAAGACAGCCAGGAAAGAAAGCCGCAGGGCTTGAAGATGAAGAAC
AACGGCGGCAGCACGTCCAAGGGCAGGCTGCACGAGCTTCCTATCTTCAA
AAGCATGGCTGCCAACCAGGACGGTGAGCTTCAGCGCGATAACAGCGACA
GCAGTGAGCAAGCAAAGGTCAGTGCAGCCTCCTCCTATGtcccgggggga
agggtccCCGCCGTCGTCGCGGAGGCCAACAAGGCCATCGTCAGCTCCAT
CAAAGACGCTCTCGTGGCCGTGTATGGGGACCGGCACTACGCCCGTTTCC
ACGCCCTCGAGACCATTGCTCGTGTGCCGTACTTCGCGTACACGTCCGTC
TTGCATTTGTACGAGACCCTGGGATGGCGGCGCCGGGCGGACTTGATGAA
AATTCACTTTGCGGAGTCTTGGAACGAGTTGCATCACCTTTTGATaatgg
aggagctgggcgGGAACGCGGAATGGCTGGACCGATTGGTCGCCGTGCAT
TTGGCATTCTTTTACTACTGGATGGCCATCGCGCTTTATATGGCGTCGCC
GGAAACCGCCTACAATTTGAACGAGATGGTCGAGCGACACGCGTACGATA
CTTACGACAAGTTTTTGGAAAcacacgaggaggagctgaaggcgTTGCCA
CCGCCTCAGATTGCGAAAGAGTACTATCAAACAGGTATGGCGAGGGTTCA
GGCTGTCACAAAGACTATTTATTCTCCGCGAGGCCCTGCTGAGATTTGTC
GCGTCTTTGTTAACCTGACGCTTCAAGTAACTTGTGTCCCCCCACCATTT
CTTTGATAATCTAGGAGATCTCTACATGTTCGACGAGTTCCACACCAACA
GCCCTGCTGAACGGCGCCGACCAAAAATCGAAAGCTTGTACGATGTTTTT
GTAAACATTCGCAACGATGAACGCGAACACTTTATGACAATGGCCGTCAT
GCAGGGGCATAGTGGAGACGCTGGCATTGTGTCGCCCAACACGCTGGACC
CCCTGAACAACCCCAGGCGCGGAAAGGACTGA

Coding sequence (CDS) from alignment at KK037248.1:378839..380120+

>rna8325 ID=rna8325|Name=rna8325|organism=Nannochloropsis gaditana|type=CDS|length=2304bp|location=Sequence derived from alignment at KK037248.1:378839..380120+ (Nannochloropsis gaditana)
ATGCAAGAACCCAAGCACGCTTACAGAGGCACTCCTCTTCTCATTTCACT
ACTAATGTTCTCGATGCTCGGTCTGTCCTTGGCAAAGGGCCCCAAGTCCG
tgtccccccccggcctcccgggcttcctccattttccctcctcggcaTCT
TCTTCTCTTGGCGCTCTTCGCTCTCCGGGGCCGTCCGCGTCGTTGTCGAA
ATGTCCTTCAATCGTGGAGCACCGCGAGGGGGTAGTTTCAGCGGCGGGAA
AGGACGAAGACAGCCAGGAAAGAAAGCCGCAGGGCTTGAAGATGAAGAAC
AACGGCGGCAGCACGTCCAAGGGCAGGCTGCACGAGCTTCCTATCTTCAA
AAGCATGGCTGCCAACCAGGACGGTGAGCTTCAGCGCGATAACAGCGACA
GCAGTGAGCAAGCAAAGGTCAGTGCAGCCTCCTCCTATGtcccgggggga
agggtccCCGCCGTCGTCGCGGAGGCCAACAAGGCCATCGTCAGCTCCAT
CAAAGACGCTCTCGTGGCCGTGTATGGGGACCGGCACTACGCCCGTTTCC
ACGCCCTCGAGACCATTGCTCGTGTGCCGTACTTCGCGTACACGTCCGTC
TTGCATTTGTACGAGACCCTGGGATGGCGGCGCCGGGCGGACTTGATGAA
AATTCACTTTGCGGAGTCTTGGAACGAGTTGCATCACCTTTTGATaatgg
aggagctgggcgGGAACGCGGAATGGCTGGACCGATTGGTCGCCGTGCAT
TTGGCATTCTTTTACTACTGGATGGCCATCGCGCTTTATATGGCGTCGCC
GGAAACCGCCTACAATTTGAACGAGATGGTCGAGCGACACGCGTACGATA
CTTACGACAAGTTTTTGGAAAcacacgaggaggagctgaaggcgTTGCCA
CCGCCTCAGATTGCGAAAGAGTACTATCAAACAGGAGATCTCTACATGTT
CGACGAGTTCCACACCAACAGCCCTGCTGAACGGCGCCGACCAAAAATCG
AAAGCTTGTACGATGTTTTTGTAAACATTCGCAACGATGAACGCGAACAC
TTTATGACAATGGCCGTCATGCAGGGGCATAGTGGAGACGCTGGCATTGT
GTCGCCCAACACGCTGGACCCCCTGAACAACCCCAGGCGCGGAAAGGACT
GAATGCAAGAACCCAAGCACGCTTACAGAGGCACTCCTCTTCTCATTTCA
CTACTAATGTTCTCGATGCTCGGTCTGTCCTTGGCAAAGGGCCCCAAGTC
CGtgtccccccccggcctcccgggcttcctccattttccctcctcggcaT
CTTCTTCTCTTGGCGCTCTTCGCTCTCCGGGGCCGTCCGCGTCGTTGTCG
AAATGTCCTTCAATCGTGGAGCACCGCGAGGGGGTAGTTTCAGCGGCGGG
AAAGGACGAAGACAGCCAGGAAAGAAAGCCGCAGGGCTTGAAGATGAAGA
ACAACGGCGGCAGCACGTCCAAGGGCAGGCTGCACGAGCTTCCTATCTTC
AAAAGCATGGCTGCCAACCAGGACGGTGAGCTTCAGCGCGATAACAGCGA
CAGCAGTGAGCAAGCAAAGGTCAGTGCAGCCTCCTCCTATGtcccggggg
gaagggtccCCGCCGTCGTCGCGGAGGCCAACAAGGCCATCGTCAGCTCC
ATCAAAGACGCTCTCGTGGCCGTGTATGGGGACCGGCACTACGCCCGTTT
CCACGCCCTCGAGACCATTGCTCGTGTGCCGTACTTCGCGTACACGTCCG
TCTTGCATTTGTACGAGACCCTGGGATGGCGGCGCCGGGCGGACTTGATG
AAAATTCACTTTGCGGAGTCTTGGAACGAGTTGCATCACCTTTTGATaat
ggaggagctgggcgGGAACGCGGAATGGCTGGACCGATTGGTCGCCGTGC
ATTTGGCATTCTTTTACTACTGGATGGCCATCGCGCTTTATATGGCGTCG
CCGGAAACCGCCTACAATTTGAACGAGATGGTCGAGCGACACGCGTACGA
TACTTACGACAAGTTTTTGGAAAcacacgaggaggagctgaaggcgTTGC
CACCGCCTCAGATTGCGAAAGAGTACTATCAAACAGGAGATCTCTACATG
TTCGACGAGTTCCACACCAACAGCCCTGCTGAACGGCGCCGACCAAAAAT
CGAAAGCTTGTACGATGTTTTTGTAAACATTCGCAACGATGAACGCGAAC
ACTTTATGACAATGGCCGTCATGCAGGGGCATAGTGGAGACGCTGGCATT
GTGTCGCCCAACACGCTGGACCCCCTGAACAACCCCAGGCGCGGAAAGGA
CTGA

Synonyms

Publications