EWM22362.1, cds8298 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM22362.1
Unique Name	cds8298
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037248.1:378839..379772 +
Alignment location	KK037248.1:379903..380120 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM22362.1
Product	immutans protein
Orig transcript id	gnl\|cribi\|Naga_100066g11.10319.mrna
Gene	PTOX
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:378839..379772 +
KK037248.1	supercontig	KK037248.1:379903..380120 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Cellular Component**
Term	Definition
GO:0009579	thylakoid
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0009987	cellular process
GO:0009058	biosynthetic process
GO:0006629	lipid metabolic process
GO:0055114	oxidation-reduction process

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity
GO:0009916	alternative oxidase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR002680	AOX

Homology

[Close]

BLAST of EWM22362.1 vs. NCBI_GenBank
Match: gi|585102863|gb|EWM22362.1| (immutans protein [Nannochloropsis gaditana])

HSP 1 Score: 794.653 bits (2051), Expect = 0.000e+0
Identity = 383/383 (100.00%), Postives = 383/383 (100.00%), Query Frame = 0

Query:    1 MQEPKHAYRGTPLLISLLMFSMLGLSLAKGPKSVSPPGLPGFLHFPSSASSSLGALRSPGPSASLSKCPSIVEHREGVVSAAGKDEDSQERKPQGLKMKNNGGSTSKGRLHELPIFKSMAANQDGELQRDNSDSSEQAKVSAASSYVPGGRVPAVVAEANKAIVSSIKDALVAVYGDRHYARFHALETIARVPYFAYTSVLHLYETLGWRRRADLMKIHFAESWNELHHLLIMEELGGNAEWLDRLVAVHLAFFYYWMAIALYMASPETAYNLNEMVERHAYDTYDKFLETHEEELKALPPPQIAKEYYQTGDLYMFDEFHTNSPAERRRPKIESLYDVFVNIRNDEREHFMTMAVMQGHSGDAGIVSPNTLDPLNNPRRGKD 383
            MQEPKHAYRGTPLLISLLMFSMLGLSLAKGPKSVSPPGLPGFLHFPSSASSSLGALRSPGPSASLSKCPSIVEHREGVVSAAGKDEDSQERKPQGLKMKNNGGSTSKGRLHELPIFKSMAANQDGELQRDNSDSSEQAKVSAASSYVPGGRVPAVVAEANKAIVSSIKDALVAVYGDRHYARFHALETIARVPYFAYTSVLHLYETLGWRRRADLMKIHFAESWNELHHLLIMEELGGNAEWLDRLVAVHLAFFYYWMAIALYMASPETAYNLNEMVERHAYDTYDKFLETHEEELKALPPPQIAKEYYQTGDLYMFDEFHTNSPAERRRPKIESLYDVFVNIRNDEREHFMTMAVMQGHSGDAGIVSPNTLDPLNNPRRGKD
Sbjct:    1 MQEPKHAYRGTPLLISLLMFSMLGLSLAKGPKSVSPPGLPGFLHFPSSASSSLGALRSPGPSASLSKCPSIVEHREGVVSAAGKDEDSQERKPQGLKMKNNGGSTSKGRLHELPIFKSMAANQDGELQRDNSDSSEQAKVSAASSYVPGGRVPAVVAEANKAIVSSIKDALVAVYGDRHYARFHALETIARVPYFAYTSVLHLYETLGWRRRADLMKIHFAESWNELHHLLIMEELGGNAEWLDRLVAVHLAFFYYWMAIALYMASPETAYNLNEMVERHAYDTYDKFLETHEEELKALPPPQIAKEYYQTGDLYMFDEFHTNSPAERRRPKIESLYDVFVNIRNDEREHFMTMAVMQGHSGDAGIVSPNTLDPLNNPRRGKD 383

[Close]

BLAST of EWM22362.1 vs. NCBI_GenBank
Match: gi|548834988|gb|ERM96920.1| (hypothetical protein AMTR_s00074p00121610 [Amborella trichopoda])

HSP 1 Score: 277.33 bits (708), Expect = 9.672e-88
Identity = 129/234 (55.13%), Postives = 162/234 (69.23%), Query Frame = 0

Query:  127 LQRDNSDSSEQAKVSAASSYVPGGRVPAVVAEANKAIVSSIKDALVAVYGDRHYARFHALETIARVPYFAYTSVLHLYETLGWRRRADLMKIHFAESWNELHHLLIMEELGGNAEWLDRLVAVHLAFFYYWMAIALYMASPETAYNLNEMVERHAYDTYDKFLETHEEELKALPPPQIAKEYYQTGDLYMFDEFHTNSPAERRRPKIESLYDVFVNIRNDEREHFMTMAVMQGH 360
            LQ    D  EQ  + + S  +    +  +    N  +   +   L A+Y DRHYARF+ LETIARVPYFA+ SVLH+YE+ GW RRAD +K+HFAESWNELHHLLIMEELGGN+ W DRL+A H+A FYY+M + +Y  S   AY+ +E VE+HAY TYDKF+    EELK+LP P++A +YY  GDLY+FDEF T+     RRPK+E+LYDVFVNIR+DE EH  TM   Q H
Sbjct:   50 LQDKEEDKVEQEPLESTSGTLEEWCI-KIEQSVNVLLTEVVIKILDALYRDRHYARFYVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAESWNELHHLLIMEELGGNSMWFDRLLAQHIAIFYYFMTVIMYAVSARMAYHFSECVEKHAYSTYDKFITLKGEELKSLPAPEVAIKYYTEGDLYLFDEFQTSRAPCTRRPKVENLYDVFVNIRDDEAEHCKTMKACQTH 282

[Close]

BLAST of EWM22362.1 vs. NCBI_GenBank
Match: gi|769822581|ref|XP_006829504.2| (ubiquinol oxidase 4, chloroplastic/chromoplastic [Amborella trichopoda])

HSP 1 Score: 277.715 bits (709), Expect = 1.083e-87
Identity = 129/234 (55.13%), Postives = 162/234 (69.23%), Query Frame = 0

Query:  127 LQRDNSDSSEQAKVSAASSYVPGGRVPAVVAEANKAIVSSIKDALVAVYGDRHYARFHALETIARVPYFAYTSVLHLYETLGWRRRADLMKIHFAESWNELHHLLIMEELGGNAEWLDRLVAVHLAFFYYWMAIALYMASPETAYNLNEMVERHAYDTYDKFLETHEEELKALPPPQIAKEYYQTGDLYMFDEFHTNSPAERRRPKIESLYDVFVNIRNDEREHFMTMAVMQGH 360
            LQ    D  EQ  + + S  +    +  +    N  +   +   L A+Y DRHYARF+ LETIARVPYFA+ SVLH+YE+ GW RRAD +K+HFAESWNELHHLLIMEELGGN+ W DRL+A H+A FYY+M + +Y  S   AY+ +E VE+HAY TYDKF+    EELK+LP P++A +YY  GDLY+FDEF T+     RRPK+E+LYDVFVNIR+DE EH  TM   Q H
Sbjct:   58 LQDKEEDKVEQEPLESTSGTLEEWCI-KIEQSVNVLLTEVVIKILDALYRDRHYARFYVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAESWNELHHLLIMEELGGNSMWFDRLLAQHIAIFYYFMTVIMYAVSARMAYHFSECVEKHAYSTYDKFITLKGEELKSLPAPEVAIKYYTEGDLYLFDEFQTSRAPCTRRPKVENLYDVFVNIRDDEAEHCKTMKACQTH 290

[Close]

BLAST of EWM22362.1 vs. NCBI_GenBank
Match: gi|659118179|ref|XP_008458984.1| (PREDICTED: ubiquinol oxidase 4, chloroplastic/chromoplastic [Cucumis melo])

HSP 1 Score: 277.33 bits (708), Expect = 2.640e-87
Identity = 135/238 (56.72%), Postives = 165/238 (69.33%), Query Frame = 0

Query:  123 QDGELQRDNSDSSEQAKVSAASSYVPGGRVPAVVAEANKAIVSSIKDALVAVYGDRHYARFHALETIARVPYFAYTSVLHLYETLGWRRRADLMKIHFAESWNELHHLLIMEELGGNAEWLDRLVAVHLAFFYYWMAIALYMASPETAYNLNEMVERHAYDTYDKFLETHEEELKALPPPQIAKEYYQTGDLYMFDEFHTNSPAERRRPKIESLYDVFVNIRNDEREHFMTMAVMQGH 360
            QDGE   DN+    Q   S +S++     +       N  +  S+   L A Y DR+YARF  LETIARVPYFA+ SVLHLYE+ GW RRAD +K+HFAESWNE+HHLLIMEELGGN  W DR +A H+A  YY+M + +YM SP  AY+L+E VE HA+ TYDKFL+   +ELK LP P++A +YY  GDLY+FDEF T+ P + RRPKIESLYDVFVNIR+DE EH  TM   Q H
Sbjct:   79 QDGE--GDNN----QGPQSLSSTHGFDNWIITFEQSINVFLTDSVIRILDAFYHDRYYARFFVLETIARVPYFAFLSVLHLYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNDWWFDRFLAQHIAVAYYFMTVFMYMISPRMAYHLSECVESHAFSTYDKFLKAQGDELKKLPAPEVAVKYYTEGDLYLFDEFQTSRPPKSRRPKIESLYDVFVNIRDDEGEHCKTMKACQSH 310

[Close]

BLAST of EWM22362.1 vs. NCBI_GenBank
Match: gi|731441018|ref|XP_002271078.3| (PREDICTED: ubiquinol oxidase 4, chloroplastic/chromoplastic [Vitis vinifera])

HSP 1 Score: 276.944 bits (707), Expect = 3.470e-87
Identity = 131/238 (55.04%), Postives = 162/238 (68.07%), Query Frame = 0

Query:  123 QDGELQRDNSDSSEQAKVSAASSYVPGGRVPAVVAEANKAIVSSIKDALVAVYGDRHYARFHALETIARVPYFAYTSVLHLYETLGWRRRADLMKIHFAESWNELHHLLIMEELGGNAEWLDRLVAVHLAFFYYWMAIALYMASPETAYNLNEMVERHAYDTYDKFLETHEEELKALPPPQIAKEYYQTGDLYMFDEFHTNSPAERRRPKIESLYDVFVNIRNDEREHFMTMAVMQGH 360
            Q      D+S     A   ++SS V    V       N  +  S+   L  +Y DR YARF  LETIARVPYFA+ SVLH+YE+ GW RRAD +K+HFAESWNE+HHLLIMEELGGNA W DR +A H+A FYY+M + +Y+ SP  AY+L+E VE HAY+TYDKF+++  +ELK LP P+IA  YY  GDLY+FDEF T    + RRPKIE+LYDVF+NIR+DE EH  TM   Q H
Sbjct:   71 QSNSFPEDDSKGCSGAPQDSSSSSVLNRWVIKFEQSFNVFLTESVIKILDTLYHDRDYARFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAIFYYFMTVFMYVLSPRMAYHLSECVESHAYETYDKFIKSQGDELKNLPAPEIAVRYYTEGDLYLFDEFQTARAPKSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTH 308

[Close]

BLAST of EWM22362.1 vs. NCBI_GenBank
Match: gi|1027857450|ref|NP_001311619.1| (ubiquinol oxidase 4, chloroplastic/chromoplastic [Capsicum annuum] >gi|9937103|gb|AAG02288.1|AF177981_1 plastid terminal oxidase [Capsicum annuum])

HSP 1 Score: 276.559 bits (706), Expect = 5.352e-87
Identity = 128/220 (58.18%), Postives = 157/220 (71.36%), Query Frame = 0

Query:  152 VPAVVAEANKAIVSSIKDALVAVYGDRHYARFHALETIARVPYFAYTSVLHLYETLGWRRRADLMKIHFAESWNELHHLLIMEELGGNAEWLDRLVAVHLAFFYYWMAIALYMASPETAYNLNEMVERHAYDTYDKFLETHEEELKALPPPQIAKEYYQTGDLYMFDEFHTNSPAERRRPKIESLYDVFVNIRNDEREHFMTMAVMQGHSGDAGIVSPNT 371
            V  +    N  +  S+   L  +Y DRHYARF  LETIARVPYFA+ SVLHLYE+ GW RRAD +K+HFAESWNE+HHLLIMEELGGNA W DR +A H+A FYY+M +++Y  SP  AY+ +E VE HAY+TYDKF++  E ELK LP P+IA  YY  GDLY+FDEF T+     RRPKI++LYDVF+NIR+DE EH  TM   Q H     + SP+T
Sbjct:  103 VIKIEQSVNIFLTDSVIKILDTLYHDRHYARFFVLETIARVPYFAFISVLHLYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVFYYFMTVSMYALSPRMAYHFSECVEHHAYETYDKFIKDQEAELKKLPAPKIAVSYYTGGDLYLFDEFQTSREPNTRRPKIDNLYDVFMNIRDDEAEHCKTMKACQTH---GSLRSPHT 319

[Close]

BLAST of EWM22362.1 vs. NCBI_GenBank
Match: gi|778664452|ref|XP_011660298.1| (PREDICTED: ubiquinol oxidase 4, chloroplastic/chromoplastic-like [Cucumis sativus] >gi|700211731|gb|KGN66827.1| Alternative oxidase [Cucumis sativus])

HSP 1 Score: 275.789 bits (704), Expect = 5.508e-87
Identity = 125/202 (61.88%), Postives = 151/202 (74.75%), Query Frame = 0

Query:  159 ANKAIVSSIKDALVAVYGDRHYARFHALETIARVPYFAYTSVLHLYETLGWRRRADLMKIHFAESWNELHHLLIMEELGGNAEWLDRLVAVHLAFFYYWMAIALYMASPETAYNLNEMVERHAYDTYDKFLETHEEELKALPPPQIAKEYYQTGDLYMFDEFHTNSPAERRRPKIESLYDVFVNIRNDEREHFMTMAVMQGH 360
             N  +  S+   L + Y DRHYARF  LETIARVPYFA+ SVLHLYE+ GW RRAD +K+HFAESWNE+HHLLIMEELGGN  W DR +A H+A  YY+M + +YM SP  AY+L+E VE HA+ TYDKFL+   +ELK LP P++A +YY  GDLY+FDEF T+ P + RRPKIE+LYDVFVNIR+DE EH  TM   Q H
Sbjct:  106 VNIFLTDSVIRILDSFYHDRHYARFFVLETIARVPYFAFLSVLHLYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNDGWFDRFLAQHIAVAYYFMTVFMYMISPRMAYHLSECVESHAFSTYDKFLKAQGDELKKLPAPEVAVKYYTEGDLYLFDEFQTSRPPKSRRPKIENLYDVFVNIRDDEGEHCKTMKACQSH 307

[Close]

BLAST of EWM22362.1 vs. NCBI_GenBank
Match: gi|1026105444|ref|XP_016551747.1| (PREDICTED: ubiquinol oxidase 4, chloroplastic/chromoplastic [Capsicum annuum])

HSP 1 Score: 276.559 bits (706), Expect = 5.589e-87
Identity = 128/220 (58.18%), Postives = 157/220 (71.36%), Query Frame = 0

Query:  152 VPAVVAEANKAIVSSIKDALVAVYGDRHYARFHALETIARVPYFAYTSVLHLYETLGWRRRADLMKIHFAESWNELHHLLIMEELGGNAEWLDRLVAVHLAFFYYWMAIALYMASPETAYNLNEMVERHAYDTYDKFLETHEEELKALPPPQIAKEYYQTGDLYMFDEFHTNSPAERRRPKIESLYDVFVNIRNDEREHFMTMAVMQGHSGDAGIVSPNT 371
            V  +    N  +  S+   L  +Y DRHYARF  LETIARVPYFA+ SVLHLYE+ GW RRAD +K+HFAESWNE+HHLLIMEELGGNA W DR +A H+A FYY+M +++Y  SP  AY+ +E VE HAY+TYDKF++  E ELK LP P+IA  YY  GDLY+FDEF T+     RRPKI++LYDVF+NIR+DE EH  TM   Q H     + SP+T
Sbjct:  103 VIKIEQSVNIFLTDSVIKILDTLYHDRHYARFFVLETIARVPYFAFISVLHLYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVFYYFMTVSMYALSPRMAYHFSECVEHHAYETYDKFIKDQEAELKKLPAPKIAVSYYTGGDLYLFDEFQTSREPNTRRPKIDNLYDVFMNIRDDEAEHCKTMKACQTH---GSLRSPHT 319

[Close]

BLAST of EWM22362.1 vs. NCBI_GenBank
Match: gi|1111072603|ref|XP_019241596.1| (PREDICTED: ubiquinol oxidase 4, chloroplastic/chromoplastic [Nicotiana attenuata] >gi|1102259633|gb|OIT19320.1| ubiquinol oxidase 4, chloroplasticchromoplastic [Nicotiana attenuata])

HSP 1 Score: 276.559 bits (706), Expect = 7.544e-87
Identity = 131/227 (57.71%), Postives = 161/227 (70.93%), Query Frame = 0

Query:  152 VPAVVAEANKAIVSSIKDALVAVYGDRHYARFHALETIARVPYFAYTSVLHLYETLGWRRRADLMKIHFAESWNELHHLLIMEELGGNAEWLDRLVAVHLAFFYYWMAIALYMASPETAYNLNEMVERHAYDTYDKFLETHEEELKALPPPQIAKEYYQTGDLYMFDEFHTNSPAERRRPKIESLYDVFVNIRNDEREHFMTMAVMQGHSGDAGIVSPNTLDPLNNP 378
            V  V    N  +  S+   L  +Y DR+YARF  LETIARVPYFA+ SVLHLYE+ GW RRAD +K+HFAESWNE+HHLLIMEELGGNA W DR +A H+A FYY+M + +Y  SP  AY+ +E VE HAY+TYDKF++   EELK LP P+IA  YY  GDLY+FDEF T+     RRPKI++LYDVF+NIR+DE EH  TM   Q H     + SP+T DP ++P
Sbjct:  112 VVKVEQSINIFLTDSVIKILDTLYHDRNYARFFVLETIARVPYFAFISVLHLYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHVAVFYYFMTVLMYALSPRMAYHFSECVENHAYETYDKFIKDQGEELKKLPAPKIAVSYYTGGDLYLFDEFQTSREPNTRRPKIDNLYDVFMNIRDDEAEHCKTMKACQTH---GSLRSPHT-DPCDDP 334

[Close]

BLAST of EWM22362.1 vs. NCBI_GenBank
Match: gi|1141989051|gb|ONK70272.1| (uncharacterized protein A4U43_C05F32020 [Asparagus officinalis])

HSP 1 Score: 274.633 bits (701), Expect = 7.978e-87
Identity = 141/272 (51.84%), Postives = 178/272 (65.44%), Query Frame = 0

Query:  101 NGGSTSKGRLHELPIFKSMAAN---QDGELQRDNSD------SSEQAKVSAASSYVPGGRVPAVVA---EANKAIVSSIKDALVAVYGDRHYARFHALETIARVPYFAYTSVLHLYETLGWRRRADLMKIHFAESWNELHHLLIMEELGGNAEWLDRLVAVHLAFFYYWMAIALYMASPETAYNLNEMVERHAYDTYDKFLETHEEELKALPPPQIAKEYYQTGDLYMFDEFHTNSPAERRRPKIESLYDVFVNIRNDEREHFMTMAVMQGH 360
            N  + SK +     I+K  AA+   +D E+  ++S        +E+ +V A  S  PG     V+      N  ++ S+   L A Y DRHYARF  LETIARVPYF++ SVLH+YE+ GW RRAD +K+HFAESWNELHHLLIMEELGGN+ W DR +A H+A FYY+M + +Y  SP  AY+ +E VE+HAY TYDKFL+   +ELK LP P+IA +YY   DLY+FDEF T      RRPKIE+LYDVFVNIR+DE EH  TM   Q H
Sbjct:    3 NETTISKRQADHRKIYKVRAASLKEKDEEVIAEDSFRARTPLDNERKEVDAEQS-EPGAVERWVIKFEQSVNVLLIDSVIKILDAFYRDRHYARFFVLETIARVPYFSFISVLHMYESFGWWRRADYLKVHFAESWNELHHLLIMEELGGNSLWFDRFLAQHIAIFYYFMIVFMYALSPRMAYHFSECVEKHAYSTYDKFLKLRGDELKKLPAPEIAVKYYMNEDLYLFDEFQTARTPNTRRPKIENLYDVFVNIRDDELEHCKTMKACQTH 273

The following BLAST results are available for this feature:

BLAST of EWM22362.1 vs. NCBI_GenBank

BLAST of EWM22362.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585102863\|gb\|EWM22362.1\|	0.000e+0	100.00	immutans protein [Nannochloropsis gaditana]	[more]
gi\|548834988\|gb\|ERM96920.1\|	9.672e-88	55.13	hypothetical protein AMTR_s00074p00121610 [Amborel...	[more]
gi\|769822581\|ref\|XP_006829504.2\|	1.083e-87	55.13	ubiquinol oxidase 4, chloroplastic/chromoplastic [...	[more]
gi\|659118179\|ref\|XP_008458984.1\|	2.640e-87	56.72	PREDICTED: ubiquinol oxidase 4, chloroplastic/chro...	[more]
gi\|731441018\|ref\|XP_002271078.3\|	3.470e-87	55.04	PREDICTED: ubiquinol oxidase 4, chloroplastic/chro...	[more]
gi\|1027857450\|ref\|NP_001311619.1\|	5.352e-87	58.18	ubiquinol oxidase 4, chloroplastic/chromoplastic [...	[more]
gi\|778664452\|ref\|XP_011660298.1\|	5.508e-87	61.88	PREDICTED: ubiquinol oxidase 4, chloroplastic/chro...	[more]
gi\|1026105444\|ref\|XP_016551747.1\|	5.589e-87	58.18	PREDICTED: ubiquinol oxidase 4, chloroplastic/chro...	[more]
gi\|1111072603\|ref\|XP_019241596.1\|	7.544e-87	57.71	PREDICTED: ubiquinol oxidase 4, chloroplastic/chro...	[more]
gi\|1141989051\|gb\|ONK70272.1\|	7.978e-87	51.84	uncharacterized protein A4U43_C05F32020 [Asparagus...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna8325	rna8325	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications