rna8324, rna8324 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8324
Unique Name	rna8324
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1238
Alignment location	KK037248.1:374634..378184 -

Link to JBrowse

Properties


Property Name	Value
Product	tesmin tso1-like cxc domain-containing protein
Orig transcript id	gnl\|cribi\|Naga_100066g10.10336.mrna
Orig protein id	gnl\|cribi\|Naga_100066g10.10336
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:374634..378184 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100066g10	gene8063	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22379.1	cds8297	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8324	rna8324-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:374634..378184-
coding sequence from alignment at KK037248.1:374634..378184-

mRNA sequence

>rna8324 ID=rna8324|Name=rna8324|organism=Nannochloropsis gaditana|type=mRNA|length=1238bp
CTTGCGCGCTTGCGTTCGTTGTCCCTTGGGTACGAAGGCGATGCTGTTGT
AATGAACGTCGATACCCCGGTGGAGGGATGGGCGAAGTTTGTGAAAGCGA
GGAGAGGTCATATGCAGCAGGAAGAGAGAGCCAACCCGCCCTCTCCGATT
CGAGATGAACCCTTCTAAAGCTGTGTGTCACTCATGCTCATGCATTTCCC
TACAATGCCCATCTATAATGCGCGAATAGAGAAGAGATGGCCGCTACTCT
CCGAATGGCTGCCTCGCGTGCTGCTCGGCAAGCCATTATCCGAGTCGCGG
CTTCCCCTGCCTCTGTCAGCCCTGTGCGGTGCTTGGCGTCAGGCGGAGGG
GAATATAACCCTTTCACACACTCCTTGGACCGGTTAAACACGAAGAAGGT
GGCCCAAACTCTAGACTTGGGCGATGGGAAGACGCAGAAGATCTTCGAGC
GCATCAAGGTCGAATTCCCTCCTGAGCATTGCCCCCCCCATGAGGCTCTC
CGGCCCTGTAGGCAAGATCACTAGCAATCTGTACTCGTACGCCTCCATGA
ACGGCGTCTTGGACGCGGTGGAGAAAGACTTCCACCTGGTCGAGAAGGAT
TTGATCGGCACGAAGGAATGGCTCAACAGCAACGGCTGGACTACGACGCA
GAAGCTAGAGATGGTGAACAAGTTCATGAGCAAGGCGGGGAGCCTGACCC
CGTTCACAAAGGAGCTTTTGCCCTACTTCGTGGAACAGAAGATGCTCAAG
CACTTGCCCGAGATCAAAGACCTGTTTTTCAAGCTGGTCAAGGAGAAGCG
CGGCGAGATCGACGTGTTCGTTACCAGCGCCGACCCCCTTGATGCGGCAA
CGCTCAAGCAGCTAGAGGGCCTTATCATCAAGCAGATCGGATCGTCGGCG
GCTAGCAAAGTGAACTTCCACACGGACGTAGACAAGGACCTGGTGGCGGG
GCTACGCATCCGGTATAAGAGCACCTTGATCGACAACACCGTCACCCGCA
AGGTGTCTGCGACCAAGGACACGTGGGCAAAGGCCTATCAGGAGGCCATG
GCGTTGTAAGGAGGAAGCTTTTAGAGGTTCGAGGGGGAAGGTGGGGTGGG
GACTTCGACTGAATCGTGCGGGTGGAAGTGGGGCCTCGCGCGGCCCCGTG
CAGGACGTAAGGCACTGGAAAGGTTAAGGTGGCAGGGTAGAAAAGTGAAC
GACGCGAAAGAAGAATTTGTGAAGAAAACTGCCCCGAA

protein sequence of rna8324

>rna8324-protein ID=rna8324-protein|Name=rna8324|organism=Nannochloropsis gaditana|type=polypeptide|length=952bp
MSEARNGNDTPISSHFMSFAGESEENWGADVASRHMDAEAEHQQEEARQQ
LGQTTEQADDATVSDVATSDAIQGDHEGKSGEDDRGLGSYVGVEGEGDGR
PRDMDRYMEGTGGIGEGDGPRPQPEPARPEEREDGQRQVEYGASKMEKPP
AQGLPQLDGGGQQEEEAEARPDDQRAPFQEPGQGGSEAGAVVRQEGSEER
GERMQPYGQRQEAPPVVAYTGSDENDVEDSEVARATKKEDMGPGSDAEEG
HGEGVALDGSRGPGAGQGAAPPPSSLSVPRPISSTLSKGESMGPVNVLWD
AQQTQASVAPAAPPSLPARSATDDSAPPLQSVPGGRLLKPEVGLPVVPSQ
VASLPPSTSSQVTPSQPPTLPAYGSNVTTMDGVAPGCNCKRSRCLKLYCQ
CFAAQAFCIPSCNCQNCLNTAGQNHLRAEAIRQIMERNPNAFQTKFRPNG
EDAVHKMGCKCRKSACLKKYCECFNAGARCSDKCSCVGCQNVAGLGRPYE
EAVMAARRGATAARQAAQQVGQNPALATPQPHMMASMVAAALRQQQQQQV
LPEVTGEGVGGGGGVKERGSGGGGSSPSSKRRRSGSSGAVPALGSNQGLA
DQQMPFFHRSLMSPTPTSQRTSPLQGHPAQAGQPDFSAQGLFSLPPGLQP
HHSPHPGLLPFFSPGQPVPPGFFEQHALLASQNLQQHQQQQQHQQHQQQL
EFIQRQQAQAQAQFFQQLAAQQQQQQQQMQQHPLHQSLSPTQLLLLQAQQ
QQQLLQQQQAAGGGGGAGGRGQGKSGKKSSEVSGGDDLQEMVQAAEDLAF
LKGSSGPGSKNHAEVEAQFAQAQQQQQQQQGAQQPQPPQDQTQQPQQHYM
AFAAAAAASGGGGGGGGAGGGAGGGRPGQGQPFFGQQVAFPGNPFLSGSV
PSQQLVAPQFLDPAQAAHMAAMYAQMQQFQGGGGGEVADGKKSPGAGQHE
TV

mRNA from alignment at KK037248.1:374634..378184-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8324 ID=rna8324|Name=rna8324|organism=Nannochloropsis gaditana|type=mRNA|length=3551bp|location=Sequence derived from alignment at KK037248.1:374634..378184- (Nannochloropsis gaditana)
GAAGCAACCAGCTTTCTTGCCGCCGACGCCTCATCACTCCCCGCCCCCGC
GACTTTCTTCCATATCGTCACCTGCTTATCCCCAGGATGGACCCACATGC
AACATATATCCCTTTTGTCCACCCATTTTCGTCTCAACTACGTAGGTCGT
GTTAGCGCGCTTTCCCCTTATCACTACGTGTGGAAGAAACGCGGCTTGCT
CGGCGCGAAGACTCGAGAGTGGCGTTTGAAAACATTCAAACCTAAAGATC
ATGTCAGAGGCCCGAAATGGCAACGACACGCCCATCTCGTCCCACTTCAT
GTCATTTGCTGGAGAATCCGAGGAAAACTGGGGGGCAGACGTAGCTTCCC
GTCACATGGATGCAGAAGCGGAGCATCAGCAAGAGGAAGCAAGACAGCAG
CTAGGACAGACAACAGAGCAAGCGGACGATGCGACTGTCAGCGACGTCGC
GACAAGCGATGCCATCCAGGGAGACCACGAGGGCAAATCTGGTGAGGATG
ATCGTGGGCTGGGCTCCTATGTTGGCGTCGAGGGCGAGGGAGATGGCAGG
CCGAGAGACATGGACAGATATATGGAGGGGACGGGCGGGATAGGGGAAGG
CGACGGACCACGGCCGCAGCCGGAACCCGCACGGCCTGAAGAGAGGGAAG
ACGGGCAGCGCCAAGTAGAGTACGGGGCGTCAAAAATGGAGAAGCCGCCA
GCGCAGGGATTGCCCCAGCTCGATGGTGGAGGGCAGCAGGAGGAGGAGGC
GGAAGCACGCCCGGACGATCAACGTGCGCCATTCCAAGAGCCAGGACAAG
GGGGCTCGGAGGCAGGCGCCGTAGTCCGGCAAGAGGGGTCGGAGGAGAGG
GGGGAGAGGATGCAGCCCTACGGCCAGCGCCAAGAGGCACCCCCAGTGGT
CGCGTACACGGGCAGTGACGAGAATGACGTGGAGGACTCTGAGGTGGCGC
GGGCCACGAAAAAAGAGGACATGGGACCAGGAAGTGACGCCGAGGAAGGG
CATGGAGAAGGTGTGGCGCTGGATGGCTCGAGGGGGCCAGGAGCTGGGCA
AGGCGCGGCGCCTCCACCCTCCTCCCTCTCGGTCCCCCGGCCCATCAGCA
GCACGCTCAGCAAGGGGGAAAGCATGGGGCCCGTCAACGTGCTGTGGGAC
GCGCAGCAAACACAAGCGTCTGTGGCCCCCGCGGCCCCGCCTTCTCTGCC
CGCCCGCTCCGCCACCGATGACTCCGCCCCGCCCCTCCAAAGCGTACCCG
GAGGAAGGCTCCTCAAGCCCGAGGTCGGGCTCCCGGTCGTCCCGTCCCAG
GTGGCCTCCCTCCCGCCCTCAACATCCTCTCAGGTCACACCCTCCCAGCC
CCCCACCCTCCCCGCCTACGGCTCCAATGTGACCACCATGGACGGGGTGG
CCCCCGGGTGCAACTGCAAACGCAGCCGGTGCCTGAAATTGTACTGCCAG
TGCTTCGCCGCCCAGGCGTTCTGCATTCCCTCTTGCAATTGTCAGAACTG
TTTGAACACGGCAGGTCAGAACCATCTGAGGGCGGAGGCAATTCGGCAAA
TCATGGAGCGTAACCCCAACGCCTTCCAGACCAAGTTCCGGCCGAACGGA
GAGGACGCTGTGCATAAGATGGGCTGCAAATGCCGCAAGTCCGCCTGCCT
AAAGAAATACTGCGAGTGTTTCAACGCCGGGGCCCGGTGCTCCGACAAGT
GTTCCTGCGTAGGCTGTCAGAATGTGGCAGGCCTGGGGCGCCCCTACGAG
GAAGCAGTTATGGCGGCCCGTCGAGGGGCCACAGCGGCGCGGCAAGCGGC
CCAGCAAGTGGGACAAAACCCGGCTTTGGCCACGCCCCAGCCCCACATGA
TGGCTTCCATGGTAGCTGCTGCCCTGCGCCAGCAGCAACAGCAGCAGGTG
CTGCCGGAGGTGACGGGGGAGGGAGTCGGCGGAGGCGGGGGTGTGAAGGA
GCGTGGATCCGGGGGGGGGGGCTCCTCCCCGTCCTCCAAGCGCCGACGGA
GCGGCAGCAGCGGGGCGGTCCCGGCGTTGGGAAGCAACCAGGGGCTCGCC
GACCAACAAATGCCCTTCTTTCACCGGTCGCTCATGTCCCCAACCCCCAC
CAGTCAGCGGACGTCGCCCCTCCAAGGACATCCGGCCCAGGCAGGGCAGC
CGGACTTCTCCGCGCAGGGGCTCTTCTCCCTCCCTCCCGGCCTCCAACCC
CACCACAGCCCGCATCCAGGGCTCCTGCCCTTCTTCTCCCCTGGACAACC
CGTGCCCCCGGGCTTCTTTGAGCAGCACGCCTTACTGGCCTCGCAAAACC
TACAACAACACCAACAGCAACAACAGCATCAGCAGCATCAGCAGCAGCTG
GAATTCATTCAGCGGCAACAGGCGCAAGCACAAGCGCAATTTTTCCAGCA
ACTGGCTGCCCAACAGCAACAACAGCAGCAACAAATGCAACAACATCCCC
TTCACCAGTCCCTCTCGCCCACGCAGCTCCTGTTGTTGCAAGCTCAGCAA
CAGCAGCAGCTCCTACAGCAACAGCAAGCGGCCGGAGGAGGGGGAGGAGC
GGGAGGGAGGGGGCAAGGGAAATCGGGGAAGAAGTCGTCGGAAGTGTCCG
GCGGGGACGATCTGCAGGAGATGGTACAAGCCGCGGAAGATTTGGCGTTC
TTGAAGGGCTCGAGTGGGCCTGGGAGTAAAAATCACGCGGAGGTGGAAGC
ACAATTCGCGCAAGCCCAACAACAGCAGCAGCAACAACAAGGAGCACAAC
AGCCTCAGCCGCCACAAGATCAAACGCAGCAGCCGCAGCAACATTACATG
GCATTTGCCGCGGCGGCGGCGGCATCAGGAGGGGGTGGTGGAGGAGGAGG
TGCAGGGGGAGGAGCCGGGGGAGGTCGGCCAGGACAAGGGCAGCCCTTCT
TTGGCCAGCAAGTTGCGTTTCCCGGGAATCCATTCCTTTCGGGAAGCGTC
CCTTCCCAACAGCTGGTGGCGCCACAATTTTTGGATCCTGCGCAAGCCGC
GCATATGGCAGCCATGTATGCACAGATGCAACAGTTTCAAGGGGGGGGTG
GGGGGGAAGTGGCCGATGGGAAGAAGTCTCCAGGTGCTGGGCAGCACGAA
ACCGTGTGAGAATTCGTGTGAGAGAGGGATGGGTAAGAAACGGAGGGAAA
CACTTGCTGCCTGGAGGCCAGATGTCGCGGCGTTTGCGATCATGCGCGTT
CTTCTCCTCTGGACCCTTCCCTTGGACTGAGCAATACCGACGTGCACGGT
GGGAAGCGGAACGCTTATCTAATCAGCCACGCAGGACAGACTTCTTCTAG
AAGGCGCGAGCTTACCAAGTGGGAGAGGATGAGCTGTTGCGTGGGTGTGC
AACAAAGACCGGGCGCTAGCACGGACAGTGGGAGCAACACAGCCTACGGG
TCATTCAGAGTGGCTTAGAAGAACGCCACGAAGTTATATTGGCACACCGC
AGCGATGGTGGCCGCTCCCCTTTGGGGGTCATGCCAAGGCCAGATACACG
AATCAATGTGCTCACAGACATGGGTAAAAAAGAAACACAGAATCGATTCG
C

Coding sequence (CDS) from alignment at KK037248.1:374634..378184-

>rna8324 ID=rna8324|Name=rna8324|organism=Nannochloropsis gaditana|type=CDS|length=2859bp|location=Sequence derived from alignment at KK037248.1:374634..378184- (Nannochloropsis gaditana)
ATGTCAGAGGCCCGAAATGGCAACGACACGCCCATCTCGTCCCACTTCAT
GTCATTTGCTGGAGAATCCGAGGAAAACTGGGGGGCAGACGTAGCTTCCC
GTCACATGGATGCAGAAGCGGAGCATCAGCAAGAGGAAGCAAGACAGCAG
CTAGGACAGACAACAGAGCAAGCGGACGATGCGACTGTCAGCGACGTCGC
GACAAGCGATGCCATCCAGGGAGACCACGAGGGCAAATCTGGTGAGGATG
ATCGTGGGCTGGGCTCCTATGTTGGCGTCGAGGGCGAGGGAGATGGCAGG
CCGAGAGACATGGACAGATATATGGAGGGGACGGGCGGGATAGGGGAAGG
CGACGGACCACGGCCGCAGCCGGAACCCGCACGGCCTGAAGAGAGGGAAG
ACGGGCAGCGCCAAGTAGAGTACGGGGCGTCAAAAATGGAGAAGCCGCCA
GCGCAGGGATTGCCCCAGCTCGATGGTGGAGGGCAGCAGGAGGAGGAGGC
GGAAGCACGCCCGGACGATCAACGTGCGCCATTCCAAGAGCCAGGACAAG
GGGGCTCGGAGGCAGGCGCCGTAGTCCGGCAAGAGGGGTCGGAGGAGAGG
GGGGAGAGGATGCAGCCCTACGGCCAGCGCCAAGAGGCACCCCCAGTGGT
CGCGTACACGGGCAGTGACGAGAATGACGTGGAGGACTCTGAGGTGGCGC
GGGCCACGAAAAAAGAGGACATGGGACCAGGAAGTGACGCCGAGGAAGGG
CATGGAGAAGGTGTGGCGCTGGATGGCTCGAGGGGGCCAGGAGCTGGGCA
AGGCGCGGCGCCTCCACCCTCCTCCCTCTCGGTCCCCCGGCCCATCAGCA
GCACGCTCAGCAAGGGGGAAAGCATGGGGCCCGTCAACGTGCTGTGGGAC
GCGCAGCAAACACAAGCGTCTGTGGCCCCCGCGGCCCCGCCTTCTCTGCC
CGCCCGCTCCGCCACCGATGACTCCGCCCCGCCCCTCCAAAGCGTACCCG
GAGGAAGGCTCCTCAAGCCCGAGGTCGGGCTCCCGGTCGTCCCGTCCCAG
GTGGCCTCCCTCCCGCCCTCAACATCCTCTCAGGTCACACCCTCCCAGCC
CCCCACCCTCCCCGCCTACGGCTCCAATGTGACCACCATGGACGGGGTGG
CCCCCGGGTGCAACTGCAAACGCAGCCGGTGCCTGAAATTGTACTGCCAG
TGCTTCGCCGCCCAGGCGTTCTGCATTCCCTCTTGCAATTGTCAGAACTG
TTTGAACACGGCAGGTCAGAACCATCTGAGGGCGGAGGCAATTCGGCAAA
TCATGGAGCGTAACCCCAACGCCTTCCAGACCAAGTTCCGGCCGAACGGA
GAGGACGCTGTGCATAAGATGGGCTGCAAATGCCGCAAGTCCGCCTGCCT
AAAGAAATACTGCGAGTGTTTCAACGCCGGGGCCCGGTGCTCCGACAAGT
GTTCCTGCGTAGGCTGTCAGAATGTGGCAGGCCTGGGGCGCCCCTACGAG
GAAGCAGTTATGGCGGCCCGTCGAGGGGCCACAGCGGCGCGGCAAGCGGC
CCAGCAAGTGGGACAAAACCCGGCTTTGGCCACGCCCCAGCCCCACATGA
TGGCTTCCATGGTAGCTGCTGCCCTGCGCCAGCAGCAACAGCAGCAGGTG
CTGCCGGAGGTGACGGGGGAGGGAGTCGGCGGAGGCGGGGGTGTGAAGGA
GCGTGGATCCGGGGGGGGGGGCTCCTCCCCGTCCTCCAAGCGCCGACGGA
GCGGCAGCAGCGGGGCGGTCCCGGCGTTGGGAAGCAACCAGGGGCTCGCC
GACCAACAAATGCCCTTCTTTCACCGGTCGCTCATGTCCCCAACCCCCAC
CAGTCAGCGGACGTCGCCCCTCCAAGGACATCCGGCCCAGGCAGGGCAGC
CGGACTTCTCCGCGCAGGGGCTCTTCTCCCTCCCTCCCGGCCTCCAACCC
CACCACAGCCCGCATCCAGGGCTCCTGCCCTTCTTCTCCCCTGGACAACC
CGTGCCCCCGGGCTTCTTTGAGCAGCACGCCTTACTGGCCTCGCAAAACC
TACAACAACACCAACAGCAACAACAGCATCAGCAGCATCAGCAGCAGCTG
GAATTCATTCAGCGGCAACAGGCGCAAGCACAAGCGCAATTTTTCCAGCA
ACTGGCTGCCCAACAGCAACAACAGCAGCAACAAATGCAACAACATCCCC
TTCACCAGTCCCTCTCGCCCACGCAGCTCCTGTTGTTGCAAGCTCAGCAA
CAGCAGCAGCTCCTACAGCAACAGCAAGCGGCCGGAGGAGGGGGAGGAGC
GGGAGGGAGGGGGCAAGGGAAATCGGGGAAGAAGTCGTCGGAAGTGTCCG
GCGGGGACGATCTGCAGGAGATGGTACAAGCCGCGGAAGATTTGGCGTTC
TTGAAGGGCTCGAGTGGGCCTGGGAGTAAAAATCACGCGGAGGTGGAAGC
ACAATTCGCGCAAGCCCAACAACAGCAGCAGCAACAACAAGGAGCACAAC
AGCCTCAGCCGCCACAAGATCAAACGCAGCAGCCGCAGCAACATTACATG
GCATTTGCCGCGGCGGCGGCGGCATCAGGAGGGGGTGGTGGAGGAGGAGG
TGCAGGGGGAGGAGCCGGGGGAGGTCGGCCAGGACAAGGGCAGCCCTTCT
TTGGCCAGCAAGTTGCGTTTCCCGGGAATCCATTCCTTTCGGGAAGCGTC
CCTTCCCAACAGCTGGTGGCGCCACAATTTTTGGATCCTGCGCAAGCCGC
GCATATGGCAGCCATGTATGCACAGATGCAACAGTTTCAAGGGGGGGGTG
GGGGGGAAGTGGCCGATGGGAAGAAGTCTCCAGGTGCTGGGCAGCACGAA
ACCGTGTGA

Synonyms

Publications