EWM22379.1, cds8297 (CDS) Nannochloropsis gaditana

Overview
NameEWM22379.1
Unique Namecds8297
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:375076..377934 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22379.1
Producttesmin tso1-like cxc domain-containing protein
Orig transcript idgnl|cribi|Naga_100066g10.10336.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:375076..377934 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR028307Lin-54_fam
IPR005172CRC
Homology
BLAST of EWM22379.1 vs. NCBI_GenBank
Match: gi|585102880|gb|EWM22379.1| (tesmin tso1-like cxc domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 1891.7 bits (4899), Expect = 0.000e+0
Identity = 952/952 (100.00%), Postives = 952/952 (100.00%), Query Frame = 0
Query:    1 MSEARNGNDTPISSHFMSFAGESEENWGADVASRHMDAEAEHQQEEARQQLGQTTEQADDATVSDVATSDAIQGDHEGKSGEDDRGLGSYVGVEGEGDGRPRDMDRYMEGTGGIGEGDGPRPQPEPARPEEREDGQRQVEYGASKMEKPPAQGLPQLDGGGQQEEEAEARPDDQRAPFQEPGQGGSEAGAVVRQEGSEERGERMQPYGQRQEAPPVVAYTGSDENDVEDSEVARATKKEDMGPGSDAEEGHGEGVALDGSRGPGAGQGAAPPPSSLSVPRPISSTLSKGESMGPVNVLWDAQQTQASVAPAAPPSLPARSATDDSAPPLQSVPGGRLLKPEVGLPVVPSQVASLPPSTSSQVTPSQPPTLPAYGSNVTTMDGVAPGCNCKRSRCLKLYCQCFAAQAFCIPSCNCQNCLNTAGQNHLRAEAIRQIMERNPNAFQTKFRPNGEDAVHKMGCKCRKSACLKKYCECFNAGARCSDKCSCVGCQNVAGLGRPYEEAVMAARRGATAARQAAQQVGQNPALATPQPHMMASMVAAALRQQQQQQVLPEVTGEGVGGGGGVKERGSGGGGSSPSSKRRRSGSSGAVPALGSNQGLADQQMPFFHRSLMSPTPTSQRTSPLQGHPAQAGQPDFSAQGLFSLPPGLQPHHSPHPGLLPFFSPGQPVPPGFFEQHALLASQNLQQHQQQQQHQQHQQQLEFIQRQQAQAQAQFFQQLAAQQQQQQQQMQQHPLHQSLSPTQLLLLQAQQQQQLLQQQQAAGGGGGAGGRGQGKSGKKSSEVSGGDDLQEMVQAAEDLAFLKGSSGPGSKNHAEVEAQFAQAQQQQQQQQGAQQPQPPQDQTQQPQQHYMAFAAAAAASGGGGGGGGAGGGAGGGRPGQGQPFFGQQVAFPGNPFLSGSVPSQQLVAPQFLDPAQAAHMAAMYAQMQQFQGGGGGEVADGKKSPGAGQHETV 952
            MSEARNGNDTPISSHFMSFAGESEENWGADVASRHMDAEAEHQQEEARQQLGQTTEQADDATVSDVATSDAIQGDHEGKSGEDDRGLGSYVGVEGEGDGRPRDMDRYMEGTGGIGEGDGPRPQPEPARPEEREDGQRQVEYGASKMEKPPAQGLPQLDGGGQQEEEAEARPDDQRAPFQEPGQGGSEAGAVVRQEGSEERGERMQPYGQRQEAPPVVAYTGSDENDVEDSEVARATKKEDMGPGSDAEEGHGEGVALDGSRGPGAGQGAAPPPSSLSVPRPISSTLSKGESMGPVNVLWDAQQTQASVAPAAPPSLPARSATDDSAPPLQSVPGGRLLKPEVGLPVVPSQVASLPPSTSSQVTPSQPPTLPAYGSNVTTMDGVAPGCNCKRSRCLKLYCQCFAAQAFCIPSCNCQNCLNTAGQNHLRAEAIRQIMERNPNAFQTKFRPNGEDAVHKMGCKCRKSACLKKYCECFNAGARCSDKCSCVGCQNVAGLGRPYEEAVMAARRGATAARQAAQQVGQNPALATPQPHMMASMVAAALRQQQQQQVLPEVTGEGVGGGGGVKERGSGGGGSSPSSKRRRSGSSGAVPALGSNQGLADQQMPFFHRSLMSPTPTSQRTSPLQGHPAQAGQPDFSAQGLFSLPPGLQPHHSPHPGLLPFFSPGQPVPPGFFEQHALLASQNLQQHQQQQQHQQHQQQLEFIQRQQAQAQAQFFQQLAAQQQQQQQQMQQHPLHQSLSPTQLLLLQAQQQQQLLQQQQAAGGGGGAGGRGQGKSGKKSSEVSGGDDLQEMVQAAEDLAFLKGSSGPGSKNHAEVEAQFAQAQQQQQQQQGAQQPQPPQDQTQQPQQHYMAFAAAAAASGGGGGGGGAGGGAGGGRPGQGQPFFGQQVAFPGNPFLSGSVPSQQLVAPQFLDPAQAAHMAAMYAQMQQFQGGGGGEVADGKKSPGAGQHETV
Sbjct:    1 MSEARNGNDTPISSHFMSFAGESEENWGADVASRHMDAEAEHQQEEARQQLGQTTEQADDATVSDVATSDAIQGDHEGKSGEDDRGLGSYVGVEGEGDGRPRDMDRYMEGTGGIGEGDGPRPQPEPARPEEREDGQRQVEYGASKMEKPPAQGLPQLDGGGQQEEEAEARPDDQRAPFQEPGQGGSEAGAVVRQEGSEERGERMQPYGQRQEAPPVVAYTGSDENDVEDSEVARATKKEDMGPGSDAEEGHGEGVALDGSRGPGAGQGAAPPPSSLSVPRPISSTLSKGESMGPVNVLWDAQQTQASVAPAAPPSLPARSATDDSAPPLQSVPGGRLLKPEVGLPVVPSQVASLPPSTSSQVTPSQPPTLPAYGSNVTTMDGVAPGCNCKRSRCLKLYCQCFAAQAFCIPSCNCQNCLNTAGQNHLRAEAIRQIMERNPNAFQTKFRPNGEDAVHKMGCKCRKSACLKKYCECFNAGARCSDKCSCVGCQNVAGLGRPYEEAVMAARRGATAARQAAQQVGQNPALATPQPHMMASMVAAALRQQQQQQVLPEVTGEGVGGGGGVKERGSGGGGSSPSSKRRRSGSSGAVPALGSNQGLADQQMPFFHRSLMSPTPTSQRTSPLQGHPAQAGQPDFSAQGLFSLPPGLQPHHSPHPGLLPFFSPGQPVPPGFFEQHALLASQNLQQHQQQQQHQQHQQQLEFIQRQQAQAQAQFFQQLAAQQQQQQQQMQQHPLHQSLSPTQLLLLQAQQQQQLLQQQQAAGGGGGAGGRGQGKSGKKSSEVSGGDDLQEMVQAAEDLAFLKGSSGPGSKNHAEVEAQFAQAQQQQQQQQGAQQPQPPQDQTQQPQQHYMAFAAAAAASGGGGGGGGAGGGAGGGRPGQGQPFFGQQVAFPGNPFLSGSVPSQQLVAPQFLDPAQAAHMAAMYAQMQQFQGGGGGEVADGKKSPGAGQHETV 952          
BLAST of EWM22379.1 vs. NCBI_GenBank
Match: gi|553189382|ref|XP_005854991.1| (tesmin tso1-like cxc domain-containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294067|gb|EKU21367.1| tesmin tso1-like cxc domain-containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 733.406 bits (1892), Expect = 0.000e+0
Identity = 421/459 (91.72%), Postives = 427/459 (93.03%), Query Frame = 0
Query:  163 QEEEAEARPDDQRAPFQEPGQGGSEAGAVVRQEGSEERGERMQPYGQRQEAPPVVAYTGSDENDVEDSEVARATKKEDMGPGSDAEEGHGEGVALDGSRGPGAGQGAAPPPSSLSVPRPISSTLSKGESMGPVNVLWDAQQTQASVAPAAPPSLPARSATDDSAPPLQSVPGGRLLKPEVGLPVVPSQVASLPPSTSSQVTPSQPPTLPAYGSNVTTMDGVAPGCNCKRSRCLKLYCQCFAAQAFCIPSCNCQNCLNTAGQNHLRAEAIRQIMERNPNAFQTKFRPNGEDAVHKMGCKCRKSACLKKYCECFNAGARCSDKCSCVGCQNVAGLGRPYEEAVMAARRGATAARQAAQQVGQNPALATPQPHMMASMVAAALRQQQQQQVLPEVTGEGVGGGGGVKERGSGGGGSSPSSKRRRSGSSGAVPALGSNQGLADQQMPFFH-RSLMSPTPTSQR 620
            QEEEAEARPDDQRAPFQEPGQGGSEAGAVVRQEGSEERGERMQPYGQRQEAPPVVAYTGSDENDVEDSEVARATKKEDMGPGSDAEEGHGEGVALDGSRGPGAGQGAAPPPSSLSVPRPISSTLSKGESMGPVNVLWDAQQTQASVAPAAPPSLPARSATDDSAPPLQSVPGGRLLKPEVGLPVVPSQVASLPPSTSSQVTPSQPPTLPAYGSNVTTMDGVAPGCNCKRSRCLKLYCQCFAAQAFCIPSCNCQNCLNTAGQNHLRAEAIRQIMERNPNAFQTKFRPNGEDAVHKMGCKCRKSACLKKYCECFNAGARCSDKCSCVGCQNVAGLGRPYEEAVMAARRGATAARQAAQQVGQNPALATPQPHMMASMVAAALRQQQQQQVLPEVTGEGVGGGGGVKERGSGGG          + ++G      + +G    + P F  RS   P P S R
Sbjct:    1 QEEEAEARPDDQRAPFQEPGQGGSEAGAVVRQEGSEERGERMQPYGQRQEAPPVVAYTGSDENDVEDSEVARATKKEDMGPGSDAEEGHGEGVALDGSRGPGAGQGAAPPPSSLSVPRPISSTLSKGESMGPVNVLWDAQQTQASVAPAAPPSLPARSATDDSAPPLQSVPGGRLLKPEVGLPVVPSQVASLPPSTSSQVTPSQPPTLPAYGSNVTTMDGVAPGCNCKRSRCLKLYCQCFAAQAFCIPSCNCQNCLNTAGQNHLRAEAIRQIMERNPNAFQTKFRPNGEDAVHKMGCKCRKSACLKKYCECFNAGARCSDKCSCVGCQNVAGLGRPYEEAVMAARRGATAARQAAQQVGQNPALATPQPHMMASMVAAALRQQQQQQVLPEVTGEGVGGGGGVKERGSGGGAPPRPPSADGAAAAGRSRRWEATRGSPTNKCPSFTGRSCPQPPPVSGR 459          
BLAST of EWM22379.1 vs. NCBI_GenBank
Match: gi|299472731|emb|CBN80299.2| (TSO1; transcription factor (Partial) [Ectocarpus siliculosus])

HSP 1 Score: 173.326 bits (438), Expect = 5.744e-41
Identity = 75/125 (60.00%), Postives = 85/125 (68.00%), Query Frame = 0
Query:  386 GCNCKRSRCLKLYCQCFAAQAFCIPSCNCQNCLNTAGQNHLRAEAIRQIMERNPNAFQTKFRPN--GEDAVHKMGCKCRKSACLKKYCECFNAGARCSDKCSCVGCQNVAGLGRPYEEAVMAARR 508
            GCNCKRS+CLKLYCQCFA Q  C  SCNC +C N A Q  +R +AI  ++ERNP AF  KFR     +  VHK GCKCRKSACLKKYCECFN G  CS+KC+CVGC+N   L   Y     AA R
Sbjct:   25 GCNCKRSKCLKLYCQCFAMQVVCTASCNCHHCYNNANQESMRLQAINGVLERNPAAFDAKFRETEKHDAVVHKTGCKCRKSACLKKYCECFNKGVACSEKCNCVGCRNTVALYSEYRGGGAAAER 149          
BLAST of EWM22379.1 vs. NCBI_GenBank
Match: gi|1210530527|dbj|GAX10854.1| (hypothetical protein FisN_31Hh062 [Fistulifera solaris])

HSP 1 Score: 140.198 bits (352), Expect = 5.428e-32
Identity = 55/112 (49.11%), Postives = 76/112 (67.86%), Query Frame = 0
Query:  386 GCNCKRSRCLKLYCQCFAAQAFCIPSCNCQNCLNTAGQNHLRAEAIRQIMERNPNAFQTKFRPN------GEDAVHKMGCKCRKSACLKKYCECFNAGARCSDKCSCVGCQN 491
            GC CK++RCLKLYCQCF A+ +C  +C C NC N   ++  R EAI+ I+ RNP+AF +KF+ +        +  HK+GCKCRKS+C+KKYCEC+    +CS  C C+ C+N
Sbjct:  189 GCTCKKTRCLKLYCQCFQAELYCGSNCRCLNCYNVVAEDAKRKEAIQSILLRNPSAFDSKFKKDAATERAARELAHKLGCKCRKSSCMKKYCECYAGNVKCSANCRCINCKN 300          
BLAST of EWM22379.1 vs. NCBI_GenBank
Match: gi|703132136|ref|XP_010105053.1| (hypothetical protein L484_001930 [Morus notabilis] >gi|587916050|gb|EXC03774.1| hypothetical protein L484_001930 [Morus notabilis])

HSP 1 Score: 142.895 bits (359), Expect = 8.419e-32
Identity = 84/202 (41.58%), Postives = 107/202 (52.97%), Query Frame = 0
Query:  310 PAAPPSLPARSATDDSAPPLQSVPGGRLLKPEVGLPVVPSQVASLPPSTSSQVTPSQPPTLPAYGSNVTTMDGVAPG---CNCKRSRCLKLYCQCFAAQAFCIPSCNCQNCLNTAGQNHLRAEAIRQIMERNPNAFQTKF-------RPNGEDA-------VHKMGCKCRKSACLKKYCECFNAGARCSDKCSCVGCQNVAG 494
            P + P LPA+  T   APPLQS    +   PEV +PV  +Q +S+P  ++  V P  P    A   +    DG       CNC+ SRCLKLYC+CFA+  +C   CNC NC N       R EA+   +ERNPNAF+ K        R + ED+        H  GC C+KS CLKKYCECF A   CS+ C C+ C+N  G
Sbjct:   52 PQSQPVLPAQPVT---APPLQSEMQSQPQPPEVAMPVA-TQTSSIP--SARMVKPESPK---ARSRSSEAKDGTPKKQKQCNCRHSRCLKLYCECFASGIYC-DGCNCINCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREDSGEVMILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEG 243          
BLAST of EWM22379.1 vs. NCBI_GenBank
Match: gi|669146436|ref|XP_008608780.1| (hypothetical protein SDRG_04870 [Saprolegnia diclina VS20] >gi|530739605|gb|EQC37847.1| hypothetical protein SDRG_04870 [Saprolegnia diclina VS20])

HSP 1 Score: 142.895 bits (359), Expect = 1.111e-31
Identity = 67/149 (44.97%), Postives = 81/149 (54.36%), Query Frame = 0
Query:  387 CNCKRSRCLKLYCQCFAAQAFCIPSCNCQNCLNTAGQNHLRAEAIRQIMERNPNAFQTKFRPNGEDAVHKMGCKCRKSACLKKYCECFNAGARCSDKCSCVGCQN--------VAGLGRPYEEAVMAARRGATAARQAAQQVGQNPALA 527
            CNCK+S+CLKLYC+CFA+  FC  SC C  C NT     LR EAI   +ERNPNAF+ K +      +H  GC C+KS C KKYCECF AG  C D C C+ C+N         AG      +AV A  R  TA +     V    A+ 
Sbjct:  353 CNCKKSKCLKLYCECFASGGFCDESCKCVGCANTPASEPLRTEAITLTLERNPNAFRPKIKKEETTPIHHNGCHCKKSFCQKKYCECFQAGVPCGDNCKCIDCKNQPGGCAQHTAGRSAAKHKAVPALLRHVTAPKPGTNMVRTTSAVT 501          
BLAST of EWM22379.1 vs. NCBI_GenBank
Match: gi|219109951|ref|XP_002176728.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411263|gb|EEC51191.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 139.428 bits (350), Expect = 3.422e-31
Identity = 57/118 (48.31%), Postives = 73/118 (61.86%), Query Frame = 0
Query:  384 APGCNCKRSRCLKLYCQCFAAQAFCIPSCNCQNCLNTAGQNHLRAEAIRQIMERNPNAFQTKFRPNGEDA----------VHKMGCKCRKSACLKKYCECFNAGARCSDKCSCVGCQN 491
            A GC CK++RCLKLYCQCF  + +C P+C C +C N   Q   R  A++ I+ RNP+AF TKF+    D            HK+GCKCRKSAC+KKYCEC+     C+  C C GC+N
Sbjct:  214 AVGCTCKKTRCLKLYCQCFGVKIYCGPNCRCLDCHNVPAQEDARQNAMKVILSRNPHAFDTKFQKTPVDGATVETPSKLLTHKLGCKCRKSACMKKYCECYAGHVYCNTHCRCTGCKN 331          
BLAST of EWM22379.1 vs. NCBI_GenBank
Match: gi|1210519389|dbj|GAX21773.1| (hypothetical protein FisN_31Lh062 [Fistulifera solaris])

HSP 1 Score: 138.272 bits (347), Expect = 5.430e-31
Identity = 55/114 (48.25%), Postives = 74/114 (64.91%), Query Frame = 0
Query:  386 GCNCKRSRCLKLYCQCFAAQAFCIPSCNCQNCLNTAGQNHLRAEAIRQIMERNPNAFQTKFRPNG----------EDAVHKMGCKCRKSACLKKYCECFNAGARCSDKCSCVGC 489
            GC CK++RCLKLYCQCF A+ +C  +C C +C N   +   R EAI+ I+ RNP+AF +KF+ +G           +  HK+GCKCRKS+C+KKYCEC+    RCS  C C+ C
Sbjct:  217 GCTCKKTRCLKLYCQCFQAELYCGTNCRCLSCYNVVAEEAKRKEAIQSILLRNPSAFDSKFKKDGVTERSAHELARELAHKLGCKCRKSSCMKKYCECYAGNVRCSSNCRCINC 330          
BLAST of EWM22379.1 vs. NCBI_GenBank
Match: gi|1073000994|ref|XP_018451421.1| (PREDICTED: protein tesmin/TSO1-like CXC 5 [Raphanus sativus])

HSP 1 Score: 139.043 bits (349), Expect = 7.038e-31
Identity = 72/168 (42.86%), Postives = 96/168 (57.14%), Query Frame = 0
Query:  331 SVPGGRLLKPEVGLPVVPSQVASL-PPSTSSQVTP-SQPPTLPAYGSNVTTMDGVAPGCNCKRSRCLKLYCQCFAAQAFCIPSCNCQNCLNTAGQNHLRAEAIRQIMERNPNAFQTKF--RPNGEDAVHKMGCKCRKSACLKKYCECFNAGARCSDKCSCVGCQNVAG 494
            S P   L+ P V  PVV SQ   L  P+   + +P S+   +   G + T        CNCK SRCLKLYC+CFA+ ++C   CNC NCLN       R +A+   ++RNPNAF++K    P+G    +  GC+C+KS CLKKYCECF A   CS+ C C+ C+N  G
Sbjct:   45 SKPAPTLVTPSVSSPVVTSQSLILNAPTKQPEESPKSRARPVVEEGRDGTPQKKKKKHCNCKLSRCLKLYCECFASGSYCDDGCNCANCLNNVDNEPARRDAVEATLDRNPNAFRSKIASSPHGVMRDNNKGCRCKKSGCLKKYCECFQANVLCSENCGCLDCKNFEG 212          
BLAST of EWM22379.1 vs. NCBI_GenBank
Match: gi|1134897443|gb|OMJ94608.1| (hypothetical protein SteCoe_2258 [Stentor coeruleus])

HSP 1 Score: 132.494 bits (332), Expect = 1.008e-30
Identity = 59/115 (51.30%), Postives = 72/115 (62.61%), Query Frame = 0
Query:  382 GVAPGCNCKRSRCLKLYCQCFAAQAFCIPSCNCQNCLNTAGQNHLRAEAIRQIMERNPNAFQTK----FRPNGEDAVHKMGCKCRKSACLKKYCECFNAGARCSDKCSCVGCQNV 492
            G    C C +S+CLKLYC+CF+   +C   CNC NC NT    ++R EA+  ++ERNPNAF  K    F      AVH  GC C KSACLK YCECF +GA CSD C C GC+N+
Sbjct:  146 GTKISCTCPKSKCLKLYCECFSRGNYC-EDCNCVNCHNTLEFENVRREAMSSLLERNPNAFHPKISTVFGDGVTQAVHSKGCHCTKSACLKNYCECFQSGAVCSDMCQCTGCKNI 259          
The following BLAST results are available for this feature:
BLAST of EWM22379.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102880|gb|EWM22379.1|0.000e+0100.00tesmin tso1-like cxc domain-containing protein [Na... [more]
gi|553189382|ref|XP_005854991.1|0.000e+091.72tesmin tso1-like cxc domain-containing protein, pa... [more]
gi|299472731|emb|CBN80299.2|5.744e-4160.00TSO1; transcription factor (Partial) [Ectocarpus s... [more]
gi|1210530527|dbj|GAX10854.1|5.428e-3249.11hypothetical protein FisN_31Hh062 [Fistulifera sol... [more]
gi|703132136|ref|XP_010105053.1|8.419e-3241.58hypothetical protein L484_001930 [Morus notabilis]... [more]
gi|669146436|ref|XP_008608780.1|1.111e-3144.97hypothetical protein SDRG_04870 [Saprolegnia dicli... [more]
gi|219109951|ref|XP_002176728.1|3.422e-3148.31predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210519389|dbj|GAX21773.1|5.430e-3148.25hypothetical protein FisN_31Lh062 [Fistulifera sol... [more]
gi|1073000994|ref|XP_018451421.1|7.038e-3142.86PREDICTED: protein tesmin/TSO1-like CXC 5 [Raphanu... [more]
gi|1134897443|gb|OMJ94608.1|1.008e-3051.30hypothetical protein SteCoe_2258 [Stentor coeruleu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8324rna8324Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications