rna8317, rna8317 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8317
Unique Name	rna8317
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1681
Alignment location	KK037248.1:359081..361987 -

Link to JBrowse

Properties


Property Name	Value
Product	programmed cell death protein 2
Orig transcript id	gnl\|cribi\|Naga_100066g4.10318.mrna
Orig protein id	gnl\|cribi\|Naga_100066g4.10318
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:359081..361987 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100066g4	gene8056	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22361.1	cds8290	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8317	rna8317-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:359081..361987-
coding sequence from alignment at KK037248.1:359081..361987-

mRNA sequence

>rna8317 ID=rna8317|Name=rna8317|organism=Nannochloropsis gaditana|type=mRNA|length=1681bp
CAGGGTACGCCGCCTCTTGTATGGCCTCCTTGACCAGGAGCTCGGGCGCT
ATGCTGTCCAAATGAAGGCCTACGATAGTCTTGGATTCTTCGATATCCTG
CGCGTCTGAGGGGGTACCAAGGAAAGCCAGAAGGATCAAAAACAGGAAAC
GAAATGAGTGCTTTCTTTATGCAGCGTAGGTTTCCTTGAACATGAATTCT
CGCCCACGCCCGTCGTAACTCCAATGCCCTCTACTTCCGTGTCGTGACCC
ACCTATTTTCGGATTGAGAACTGCGTCCCCGAACATCTCAAGGATTTTAG
AAAGTGTCAGCCGGAAAATTGCCCTGTCCAATTTAAGTTATATTTTCTGG
GACGGGGCTGCAATTGCCGAGAAGAGACCGGCAATTGAAGCACGCCTGAG
ATCGAGATGACTTGCTTGCTATTTCGCACGACTTGCAAAAGGAAACCGAA
CGGGAGGAATTGCATGCGATGTTTTATTACTTCGGTTATTTAGCGCTTTG
TATTGTGCGCTGTGTAATACTGATTAATGGGTTAAAATCAAACTTATTAA
GATGCTACTGTCGTACGCTCCGTCTTCGAGAAACAGATATATTCATTTGT
CTCCGTCGGACAGTCATGAGTGCCTCCGGATGCCGCCAAGAAGATGATGC
GTCAAGAAGAGGGGTTAGATGGGATGAGGAGACAATCGCGGAGCACGACA
AGCTGCGGGGAACGCGACAAAAAATCGATGAACCCCCCACGCCCTACCAC
ATGTCCTACGAACCAGCCGACGCCGAGGATGACAACATGAAGTTGGATGG
GACTGGAGAGGGCGAAGATGACAAGCCCCCCGGAAATAAGGGCAGTCCTG
TCACCCGAAATCGGGTCTCCCGCTCGAACTCCGTCTCCTCAGCACCTGGA
ACGCCCAGTCAAATTGCCAAGAAAAGTCAACCTGGCTACCTAGCGGAAAA
CTGGCAGGAACTGACGACAGCACTGGAACAAGCTGCCCAAAATCGAGAGG
CTCTTCGACAAGCGAGGGGTTCATCGTCGGCAGTGTCCGATGCAGGAGGG
AAAGGGGATGGACAGTCTCCGTCCATGTCTCGAAGCGGGAGCGGCAGCAG
CCAGCGCTCAGGCAAAGACAGATCGGCAAGTTTTTCCTCGGATTCAGGAC
ATGACCGTGCTTCAGACGACAAGCTGATGAAGAGCCCTCAGCACGCGGCC
TTTGCCAAAAAGCGAATGAGTCACTACGACGAATACAAACGCTTGCAAGA
ATGGCGGAAGGCGCATGAGGGCGAGGAAGAAAAAGACGAGGAAGAGGAAG
AAGAGAAAGGAAAAGGACACGAAGGTACTGGTAAGGGCAAAAATCAGGCA
GAAGCGGAGAAGACTGCCGAGAAATGACCTTCAAAAGGAGTTCAGCTCTG
ATTGAGACTCAAAAGAGTCGAGAGAAAGCGAGACTTTGAAAAATGTTAAT
ACGTTGATGCCTAGAACTAAGGGCCGATTTGAAAGTTTTGGTCTAGAGAG
TTCAGGCAAAAAGCTTTAGCCACATTTTGTGGCCACATTTCGACAAAAAT
GAATATCATTGGATTTACGATCTACAGCTGTATTCTTGATTCTATCAAAA
TTTTCTTCCGAAGGGTTTGGTGATATGCCCACCAGTCATGTGGGTTGTGT
GCCCAGAGAGACGTGTACCGCTACGCAAGGT

protein sequence of rna8317

>rna8317-protein ID=rna8317-protein|Name=rna8317|organism=Nannochloropsis gaditana|type=polypeptide|length=525bp
MVVEPTGIMDGDETQAGMTPSTIKIPVDCRRMLTKEEGWNSGTDSKYRCE
AKGSGRGKDVSPTSTSPLLVPVADTEIKRKVGCIGEDGRSSDDSSDDDGD
RGMQLGFVERLPEEMQNRLLFQDPDWRDWDGGKVGGKPIWLNPRDLPPQK
LLLCPSCQDPLSFVLQIYCPLDEPEEAFHRALYVFVCQKFRCQGPGCVKA
LRCQLPRQNLFYASDPRDIRKNGGRIKGRAALAVRTCDVCGLRADKVCAG
CKRVSYCTPKHQKEGWKTGHKLDCRKVEREKLATEGGGQERGANLTSGGV
PASSVNPPQANAPDLGRPADSGVKNALRSTFPEYEIVIEEERVQNDAVRD
AREQDADAALLEKYKHVIVSETDDDASLDQQHLNQATGAKLALTDALSLR
FLAVIGRYPAQILRYARWDDAAALWVSRDERPASSTDIPSCPLCGARRAF
EFQVMPQLLHHLRVDAQVQAPGHLQLGSLDWGTLAVYTCVKSCRTGEKVT
GIEEGTGGEEGRYVEEFVWRQKPMA

mRNA from alignment at KK037248.1:359081..361987-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8317 ID=rna8317|Name=rna8317|organism=Nannochloropsis gaditana|type=mRNA|length=2907bp|location=Sequence derived from alignment at KK037248.1:359081..361987- (Nannochloropsis gaditana)
GTACAGAAATGGAGCTGGCTTTGATAACATTTTCCAGATAAGCGGCGGCC
AGTCACTTGGAAAAGAAAATATCTTGCTGTTTGATAATGGTGGTCGAGCC
CACTGGCATTATGGACGGAGATGAGACACAAGCCGGTATGACTCCTTCAA
CGATCAAAATACCGGTAGATTGTAGAAGGATGCTGACGAAAGAAGAGGGT
TGGAATTCGGGTACCGATAGCAAATATCGATGTGAGGCTAAAGGATCAGG
ACGGGGCAAAGATGTTTCTCCTACGTCTACTTCTCCACTTCTTGTGCCGG
TGGCGGATACAGAAATCAAAAGGAAAGTTGGCTGTATAGGTGAAGATGGT
AGGAGTAGTGATGATTCATCAGACGACGACGGTGACCGGGGGATGCAGCT
TGGGTTTGTGGAGCGGCTCCCCGAGGAGATGCAAAATCGCTTGTTGTTCC
AAGACCCTGACTGGCGCGACTGGGACGGAGGGAAAGTGGGCGGGAAGCCC
ATATGGCTAAACCCTAGAGATCTACCCCCTCAAAAATTGTTGCTTTGTCC
CTCCTGCCAAGATCCTCTTAGCTTCGTCCTGCAGATTTATTGCCCTCTTG
ACGAGCCTGAGGAGGCCTTTCATCGCGCCCTATACGTCTTTGTCTGCCAA
AAGTTTCGATGCCAAGGACCGGGGTGCGTTAAAGCTCTGCGCTGTCAATT
ACCTCGTCAAAATTTATTTTATGCTTCAGATCCTCGGGATATTAGGAAAA
ACGGAGGCCGTATAAAGGGACGAGCAGCCCTTGCAGTGCGGACGTGTGAC
GTGTGCGGGCTGCGGGCAGACAAAGTCTGCGCGGGCTGTAAACGCGTTAG
CTACTGCACACCCAAACATCAAAAGGAAGGATGGAAAACAGGACATAAAT
TGGACTGCAGAAAAGTGGAGAGAGAAAAGCTCGCTACCGAGGGTGGCGGC
CAGGAAAGGGGTGCAAACCTTACCTCTGGGGGTGTCCCAGCGTCTTCGGT
CAATCCCCCTCAGGCGAATGCACCAGACCTTGGGAGACCTGCTGACTCGG
GAGTCAAAAACGCTCTGCGCTCTACATTTCCTGAATATGAGATCGTGATC
GAGGAGGAACGCGTACAGAACGATGCGGTCCGTGACGCTCGTGAGCAGGA
TGCAGACGCGGCGCTTTTAGAGAAATACAAACACGTCATCGTCTCAGAAA
CCGACGACGACGCCTCTCTTGATCAACAGCATTTGAATCAAGCCACGGGG
GCCAAGTTGGCCCTGACGGACGCTCTGAGCTTGCGGTTCCTGGCTGTGAT
CGGTCGCTACCCTGCACAGATTCTTCGCTACGCACGCTGGGATGACGCGG
CCGCCTTGTGGGTCTCCCGAGACGAACGTCCCGCCTCAAGCACCGACATT
CCTTCCTGCCCTCTCTGTGGAGCGAGGCGCGCCTTTGAGTTTCAGGTCAT
GCCGCAACTCCTCCACCACCTCCGGGTGGATGCACAGGTGCAAGCACCCG
GGCATCTCCAGCTCGGCTCCCTGGATTGGGGAACTTTGGCCGTGTATACA
TGCGTTAAAAGTTGTAGGACCGGTGAGAAAGTCACCGGGATCGAGGAGGG
GACGGGAGGGGAAGAGGGGAGGTATGTAGAGGAGTTTGTCTGGCGGCAAA
AGCCGATGGCGTGATCGGAGGCGGGAAAAATTCAAAGCAGTCACACAGCA
ATGAGGATGAGTCTTTCATATCAATGTTTGCTTCCTTCCATGAGTCCTGT
CATCCTTGAATTACGTCCACCCGATCAAAGACGGCTGAACCATCACCACC
ACATCCAATACCCGGACACGCAAGTTGCTTCAAAACATGGCTCCCTGGCG
GCATCTTTATACCACTCATGAAGACGTGGCGCTGCTGCTTCCACCAACTC
CGCGTGTCCATCGACTAACCGTTGCATGAAGGGAAGCAAGGTCGCATCTG
CTGCCGAGAAAGTCGCGCCCGCCAAGAAAGGGCATGGCCCAATAATCTCT
TTGTCGAGCTGATTCAACGATGAAAAAAGGCTAGTTATGTCTTTTCGTTC
GATGGCCGTGCGAGCGCTCCTCAGGAATGGATTCAGGAGCGAACGCAAGT
GAGTGTAAGCCTTAGGCGAGGCGGGAACCAGCGGATTGGGAAAGCCAAGC
TTTGGACCTGGAAGGCTTGTAAGATGGTCAAGAATATTGTCGGACTCCAC
AACACATCGCCCAGACGGCAGCCATAGCACTGGTACCTGTCCTTTAGGAC
TGATGTCCAGAAACCATTGCGGTTTGCCACTCCCTCCGTAGAGTCCTACC
TCCAACAAATCATAATCCTTGGACCCAGCATACAAGTATTCAAGCGCAAT
CCACGCTTTTTGCGCAAAAGGGCATTTTTTGTTCGTGACGAGTCGAAGCC
GTGAAGGGTTCGAAGGTTTGGAAGAAGAGGCAGAAATCATACTTAATGGT
GTCAAATAAGCCTGAGTGCCGAGGAGGAAGAGGCAGAGGGAGAAAAATAT
TGCGCACCACCCGCTGACGCCCGATGGAGTTGTTGCAACTCTTCGACTTC
TCATTCAGCTCACTTTTCCGGCAAAGTAGCTGAAGAAGCGTCGTAAACTC
TGTGCTGCAGAGGAGGAAAGGGGTGGGGAAGGGGGGGGGAGGTTACTTCG
TTTAAGACACATTGTACCACTTTTTTTCCTCATTTACGCGAGTTGCATGA
AAGTTTCACTCGTGAAAGCGAGACAATTAATTGAATTGCAAGTGAGTGTT
CATATTGAACAATCAGACAACCTTGCGTAGCGGTACACGTCTCTCTGGGC
ACACAACCCACATGACTGGTGGGCATATCACCAAACCCTTCGGAAGAAAA
TTTTGATAGAATCAAGAATACAGCTGTAGATCGTAAATCCAATGATATTC
ATTTTTG

Coding sequence (CDS) from alignment at KK037248.1:359081..361987-

>rna8317 ID=rna8317|Name=rna8317|organism=Nannochloropsis gaditana|type=CDS|length=1578bp|location=Sequence derived from alignment at KK037248.1:359081..361987- (Nannochloropsis gaditana)
ATGGTGGTCGAGCCCACTGGCATTATGGACGGAGATGAGACACAAGCCGG
TATGACTCCTTCAACGATCAAAATACCGGTAGATTGTAGAAGGATGCTGA
CGAAAGAAGAGGGTTGGAATTCGGGTACCGATAGCAAATATCGATGTGAG
GCTAAAGGATCAGGACGGGGCAAAGATGTTTCTCCTACGTCTACTTCTCC
ACTTCTTGTGCCGGTGGCGGATACAGAAATCAAAAGGAAAGTTGGCTGTA
TAGGTGAAGATGGTAGGAGTAGTGATGATTCATCAGACGACGACGGTGAC
CGGGGGATGCAGCTTGGGTTTGTGGAGCGGCTCCCCGAGGAGATGCAAAA
TCGCTTGTTGTTCCAAGACCCTGACTGGCGCGACTGGGACGGAGGGAAAG
TGGGCGGGAAGCCCATATGGCTAAACCCTAGAGATCTACCCCCTCAAAAA
TTGTTGCTTTGTCCCTCCTGCCAAGATCCTCTTAGCTTCGTCCTGCAGAT
TTATTGCCCTCTTGACGAGCCTGAGGAGGCCTTTCATCGCGCCCTATACG
TCTTTGTCTGCCAAAAGTTTCGATGCCAAGGACCGGGGTGCGTTAAAGCT
CTGCGCTGTCAATTACCTCGTCAAAATTTATTTTATGCTTCAGATCCTCG
GGATATTAGGAAAAACGGAGGCCGTATAAAGGGACGAGCAGCCCTTGCAG
TGCGGACGTGTGACGTGTGCGGGCTGCGGGCAGACAAAGTCTGCGCGGGC
TGTAAACGCGTTAGCTACTGCACACCCAAACATCAAAAGGAAGGATGGAA
AACAGGACATAAATTGGACTGCAGAAAAGTGGAGAGAGAAAAGCTCGCTA
CCGAGGGTGGCGGCCAGGAAAGGGGTGCAAACCTTACCTCTGGGGGTGTC
CCAGCGTCTTCGGTCAATCCCCCTCAGGCGAATGCACCAGACCTTGGGAG
ACCTGCTGACTCGGGAGTCAAAAACGCTCTGCGCTCTACATTTCCTGAAT
ATGAGATCGTGATCGAGGAGGAACGCGTACAGAACGATGCGGTCCGTGAC
GCTCGTGAGCAGGATGCAGACGCGGCGCTTTTAGAGAAATACAAACACGT
CATCGTCTCAGAAACCGACGACGACGCCTCTCTTGATCAACAGCATTTGA
ATCAAGCCACGGGGGCCAAGTTGGCCCTGACGGACGCTCTGAGCTTGCGG
TTCCTGGCTGTGATCGGTCGCTACCCTGCACAGATTCTTCGCTACGCACG
CTGGGATGACGCGGCCGCCTTGTGGGTCTCCCGAGACGAACGTCCCGCCT
CAAGCACCGACATTCCTTCCTGCCCTCTCTGTGGAGCGAGGCGCGCCTTT
GAGTTTCAGGTCATGCCGCAACTCCTCCACCACCTCCGGGTGGATGCACA
GGTGCAAGCACCCGGGCATCTCCAGCTCGGCTCCCTGGATTGGGGAACTT
TGGCCGTGTATACATGCGTTAAAAGTTGTAGGACCGGTGAGAAAGTCACC
GGGATCGAGGAGGGGACGGGAGGGGAAGAGGGGAGGTATGTAGAGGAGTT
TGTCTGGCGGCAAAAGCCGATGGCGTGA

Synonyms

Publications