rna831, rna831 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna831
Unique Name	rna831
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1977
Alignment location	CM002456.1:522329..523342 +

Link to JBrowse

Properties


Property Name	Value
Product	proteasome subunit alpha
Orig transcript id	gnl\|cribi\|Naga_100017g22.303.mrna
Orig protein id	gnl\|cribi\|Naga_100017g22.303
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:522329..523342 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100017g22	gene795	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna831	rna831-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29805.1	cds831	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:522329..523342+
coding sequence from alignment at CM002456.1:522329..523342+

mRNA sequence

>rna831 ID=rna831|Name=rna831|organism=Nannochloropsis gaditana|type=mRNA|length=1977bp
ATGTCAGCTCCCAAGAAAGCAAAGCATGTGGACCAATTTACAGCTCTAGG
AGAGCTTACCACCTTGGTCTGCGACACGGGCGACGTGGAGGCGATCAAGC
GCCTCAAGCCGACGGATGCGACTACGAACCCGTCTCTCATCTTCAAAGCC
GCCTCGCTCCCGCAGTACCTTTCCCTTGTTAACGATGCCGTGGCTTATGG
GAAGGCCCTTCCCGCCTCGCATTCTGATAGCGAGCGTTTAGCAGCAACCA
TGGACCGCCTTGCTGTAAATTTCGGGGCAGAGATCACCAAAATCGTGCCC
GGGTATGTAAGCACAGAGGTAGACGCCCGCCTTAGTTACGACAAGGATGA
AACGTTGAAGCGAGCGCGGCGCATCATCGGCATGTACAAAGAGCTGGGCA
TCTCCAAGGAGAGGATCCTGATCAAGATCGCCTCCACTTGGGAAGGGATC
AAGGCCGCGGAGGCCCTGGAACAAGAGGGCGTCAAGACGAACCTCACCCT
CCTCTTCAGCCTCGCGCAAGCTGTGGCAGCGGCGGAAGCGGGCGCGACGT
TGGTCTCCCCCTTTGTAGGCCGTATCTTAGACTGGTGGAAGAAGGAAACG
GGGAAGACGTTCGCGGACGCGGAGGAGGACCCGGGCGTGCAGTCCGTGCG
TCAGATCTACGGGTACTACAAGAAGTACGGCTACGAGACGATCGTGATGG
GGGCGTCTTTCCGCAACAAGGGGGAGATCACGGCGTTGGCAGGCTGCGAC
CGGCTGACCATCAGCCCGGGCCTCTTGGACGAGCTGAAAGATTGCCACGA
CCCACTGCCGCGGGTGCTGGAGCCGGAGAATGGGAGCTCGTTTTATGACG
GCGAACGGATCCGTGTGGATGAAAAATCCTTTCGACTGGCCATGAACGCC
GATGCAATGGCCACCGCCAAGTTGGCGGAGGGCATTCGCGGCTTCGCGGC
TGATATTGAGAAGCTGGAGGCGATGATCGCGAAAATGCTGGTTCCGCCCT
CAGACCAGTTCTCTCAGTTGGCAGTTTTCACCACCTTGGTCTGCGACACG
GGCGACGTGGAGGCGATCAAGCGCCTCAAGCCGACGGATGCTACTACGAA
CCCGTCTCTCATCTTCAAAGCCGCCTCGCTCCCGCAGTACAAGCCTCTAG
TGGACTCCGCGATAGCCGCCGGGAAAGCAGTGGCGGATGCAGGAATGAGC
CTGAAAGAAAGGCTGGATCTAATATTGGACAGGCTGGCCGTAAATTTTGG
GGCAGAGATCACCAAAATCGTGCCCGGGTATGTAAGCACAGAGGTAGACG
CCCGCCTCTCCTTTGACACGGATCAAACTCTGGCCAGGGCCCGGCGCATC
ATCGGCATGTACAAAGAGCTGGGCATCTCCAAGGAGAGGATCCTGATCAA
GATCGCCTCCACTTGGGAAGGGATCAAGGCCGCGGAGGCCCTGGAACAAG
AGGGCGTCAAGACGAACCTCACCCTCCTCTTCAGCCTCGCGCAAGCTGTG
GCAGCGGCGGAAGCGGGCGCGACGTTGGTCTCCCCCTTTGTAGGCCGTAT
CTTAGACTGGTGGAAGAAGGAAACGGGGAAGACGTTCGCGGACGCGGAGG
AGGACCCGGGCGTGCAGTCCGTGCGTCAGATCTACGGGTACTACAAGAAG
TACGGCTACGAGACGATCGTGATGGGGGCGTCTTTCCGCAACAAGGGGGA
GATCACGGCGTTGGCAGGCTGCGACCGGCTGACCATCAGTCCGGGCCTCT
TGGACGAGCTGAAGGATTGCCACGACCCACTGCCGCGGGTGCTGGAGGCT
AGCAAGGCCGCCGCTGTTTACGGAGGTCCAAAGCTGCACATGAACGAAAA
AGCTTTTAGGTTTGCCATGAATGCCGATGCAATGGCCACAGATAAGCTTG
CGGAAGGAATAAGGGGCTTCGCGGCTGATATTGAGAAGCTGGAAGCTATG
ATCGCAAAGAGGCTGGGAGAGCATTGA

protein sequence of rna831

>rna831-protein ID=rna831-protein|Name=rna831|organism=Nannochloropsis gaditana|type=polypeptide|length=176bp
MLSGDVVDVGKAEKTALSLTKQSKMTGPLRAAPMPVRGRKRYRFHASVTF
GFLGFCCLVQRAQSSMGQEEARLYDRNLQHFSPEGRIYQVQYAELAARRG
NPVVAVSNNQDALALCVERRRASALEEPGIAWEKVGEIQQAAWREGHCVF
HRRFTAPEHFCTRSTALRRVLRGWGC

mRNA from alignment at CM002456.1:522329..523342+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna831 ID=rna831|Name=rna831|organism=Nannochloropsis gaditana|type=mRNA|length=1014bp|location=Sequence derived from alignment at CM002456.1:522329..523342+ (Nannochloropsis gaditana)
ATGCTGAGTGGGGATGTAGTTGATGTAGGAAAAGCAGAGAAAACAGCACT
GAGCCTTACGAAGCAAAGTGACGCCATCtacgttcctcttccttcctctt
cgcttgTTGTTATGAGGAAGCACGCTTTATTTTCACCGGTGCAGGCTCGA
TTTTTTTTTGCTGAGTTCGTTTTGCAAACAATACTTCACGTATGCGCGTC
CATCACCGTGACAGGCAAAATGACAGGGCCCCTGCGAGCCGCACCGATGC
CtgtccgagggaggaaacggtaCCGATTTCATGCTTCAGTGACCTTCGGG
TTCCTCGGCTTCTGCTGCCTTGTGCAACGTGCCCAGTCATCTATGGGTCA
GGAAGAAGCTCGTCTATATGACCGAAATCTGCAGCACTTTTCACCGGAGG
GCCGTATCTATCAGGTAAAAGGTTTTTCATTTTATGTCGTAAGCCTCAAC
ACAGGATTATGACTGCATGCTCAAGCAAGTGCCCATACGCTCCTTATTAT
TTATTACCTTTTACTATTATTACCTTGACTTGGGATCCTTTGGTCACGCA
ACTCATTACTAGGTGCAATATGCAGAACTTGCTGCTCGGCGTGGGAACCC
AGTGGTGGCCGTGAGCAATAATCAGGACGCCCTAGCCTTGTGTGTGGAGC
GACGGcgggcctccgccttggaGGAACCCGGTATTGCCTGGGAAAAAGTG
GGCGAAATTCAACAAGGTACATACATGGGATTTGCTGGGCTTGCGGCGGA
TGGACGACGGCTGTTGGACAGGACAAGGTTGTTTGCGGAAAACTATCGCT
TGAAATACGCGGAGCTGCCTGGCGTGAAGGACATTGCGTATTTCATCGGA
GGTACGAGGGAGTGACGACGGTACAGGGTAACGACTGGAGTAGCCGAATG
TTTTCCTTTGTGATGCTTATGTCCCAGGTTTCCGCCTCCAGATTTACAGC
ACCGGAACACTTTTGTACGCGCTCAACGGCCTTACGGCGTGTCCTGCGTG
GTTGGGGGTGTTGA

Coding sequence (CDS) from alignment at CM002456.1:522329..523342+

>rna831 ID=rna831|Name=rna831|organism=Nannochloropsis gaditana|type=CDS|length=2655bp|location=Sequence derived from alignment at CM002456.1:522329..523342+ (Nannochloropsis gaditana)
ATGCTGAGTGGGGATGTAGTTGATGTAGGAAAAGCAGAGAAAACAGCACT
GAGCCTTACGAAGCAAAGCAAAATGACAGGGCCCCTGCGAGCCGCACCGA
TGCCtgtccgagggaggaaacggtaCCGATTTCATGCTTCAGTGACCTTC
GGGTTCCTCGGCTTCTGCTGCCTTGTGCAACGTGCCCAGTCATCTATGGG
TCAGGAAGAAGCTCGTCTATATGACCGAAATCTGCAGCACTTTTCACCGG
AGGGCCGTATCTATCAGGTGCAATATGCAGAACTTGCTGCTCGGCGTGGG
AACCCAGTGGTGGCCGTGAGCAATAATCAGGACGCCCTAGCCTTGTGTGT
GGAGCGACGGcgggcctccgccttggaGGAACCCGGTATTGCCTGGGAAA
AAGTGGGCGAAATTCAACAAGCTGCCTGGCGTGAAGGACATTGCGTATTT
CATCGGAGATTTACAGCACCGGAACACTTTTGTACGCGCTCAACGGCCTT
ACGGCGTGTCCTGCGTGGTTGGGGGTGTTGAATGCTGAGTGGGGATGTAG
TTGATGTAGGAAAAGCAGAGAAAACAGCACTGAGCCTTACGAAGCAAAGC
AAAATGACAGGGCCCCTGCGAGCCGCACCGATGCCtgtccgagggaggaa
acggtaCCGATTTCATGCTTCAGTGACCTTCGGGTTCCTCGGCTTCTGCT
GCCTTGTGCAACGTGCCCAGTCATCTATGGGTCAGGAAGAAGCTCGTCTA
TATGACCGAAATCTGCAGCACTTTTCACCGGAGGGCCGTATCTATCAGGT
GCAATATGCAGAACTTGCTGCTCGGCGTGGGAACCCAGTGGTGGCCGTGA
GCAATAATCAGGACGCCCTAGCCTTGTGTGTGGAGCGACGGcgggcctcc
gccttggaGGAACCCGGTATTGCCTGGGAAAAAGTGGGCGAAATTCAACA
AGCTGCCTGGCGTGAAGGACATTGCGTATTTCATCGGAGATTTACAGCAC
CGGAACACTTTTGTACGCGCTCAACGGCCTTACGGCGTGTCCTGCGTGGT
TGGGGGTGTTGAATGCTGAGTGGGGATGTAGTTGATGTAGGAAAAGCAGA
GAAAACAGCACTGAGCCTTACGAAGCAAAGCAAAATGACAGGGCCCCTGC
GAGCCGCACCGATGCCtgtccgagggaggaaacggtaCCGATTTCATGCT
TCAGTGACCTTCGGGTTCCTCGGCTTCTGCTGCCTTGTGCAACGTGCCCA
GTCATCTATGGGTCAGGAAGAAGCTCGTCTATATGACCGAAATCTGCAGC
ACTTTTCACCGGAGGGCCGTATCTATCAGGTGCAATATGCAGAACTTGCT
GCTCGGCGTGGGAACCCAGTGGTGGCCGTGAGCAATAATCAGGACGCCCT
AGCCTTGTGTGTGGAGCGACGGcgggcctccgccttggaGGAACCCGGTA
TTGCCTGGGAAAAAGTGGGCGAAATTCAACAAGCTGCCTGGCGTGAAGGA
CATTGCGTATTTCATCGGAGATTTACAGCACCGGAACACTTTTGTACGCG
CTCAACGGCCTTACGGCGTGTCCTGCGTGGTTGGGGGTGTTGAATGCTGA
GTGGGGATGTAGTTGATGTAGGAAAAGCAGAGAAAACAGCACTGAGCCTT
ACGAAGCAAAGCAAAATGACAGGGCCCCTGCGAGCCGCACCGATGCCtgt
ccgagggaggaaacggtaCCGATTTCATGCTTCAGTGACCTTCGGGTTCC
TCGGCTTCTGCTGCCTTGTGCAACGTGCCCAGTCATCTATGGGTCAGGAA
GAAGCTCGTCTATATGACCGAAATCTGCAGCACTTTTCACCGGAGGGCCG
TATCTATCAGGTGCAATATGCAGAACTTGCTGCTCGGCGTGGGAACCCAG
TGGTGGCCGTGAGCAATAATCAGGACGCCCTAGCCTTGTGTGTGGAGCGA
CGGcgggcctccgccttggaGGAACCCGGTATTGCCTGGGAAAAAGTGGG
CGAAATTCAACAAGCTGCCTGGCGTGAAGGACATTGCGTATTTCATCGGA
GATTTACAGCACCGGAACACTTTTGTACGCGCTCAACGGCCTTACGGCGT
GTCCTGCGTGGTTGGGGGTGTTGAATGCTGAGTGGGGATGTAGTTGATGT
AGGAAAAGCAGAGAAAACAGCACTGAGCCTTACGAAGCAAAGCAAAATGA
CAGGGCCCCTGCGAGCCGCACCGATGCCtgtccgagggaggaaacggtaC
CGATTTCATGCTTCAGTGACCTTCGGGTTCCTCGGCTTCTGCTGCCTTGT
GCAACGTGCCCAGTCATCTATGGGTCAGGAAGAAGCTCGTCTATATGACC
GAAATCTGCAGCACTTTTCACCGGAGGGCCGTATCTATCAGGTGCAATAT
GCAGAACTTGCTGCTCGGCGTGGGAACCCAGTGGTGGCCGTGAGCAATAA
TCAGGACGCCCTAGCCTTGTGTGTGGAGCGACGGcgggcctccgccttgg
aGGAACCCGGTATTGCCTGGGAAAAAGTGGGCGAAATTCAACAAGCTGCC
TGGCGTGAAGGACATTGCGTATTTCATCGGAGATTTACAGCACCGGAACA
CTTTTGTACGCGCTCAACGGCCTTACGGCGTGTCCTGCGTGGTTGGGGGT
GTTGA

Synonyms

Publications