EWM29805.1, cds831 (CDS) Nannochloropsis gaditana

Overview
NameEWM29805.1
Unique Namecds831
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:522329..522395 +
Alignment locationCM002456.1:522543..522742 +
Alignment locationCM002456.1:522891..523044 +
Alignment locationCM002456.1:523143..523179 +
Alignment locationCM002456.1:523270..523342 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29805.1
Productproteasome subunit alpha
Orig transcript idgnl|cribi|Naga_100017g22.303.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:522329..522395 +
CM002456.1supercontigCM002456.1:522543..522742 +
CM002456.1supercontigCM002456.1:522891..523044 +
CM002456.1supercontigCM002456.1:523143..523179 +
CM002456.1supercontigCM002456.1:523270..523342 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004175endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0019773proteasome core complex, alpha-subunit complex
Vocabulary: INTERPRO
TermDefinition
IPR029055Ntn_hydrolases_N
IPR000426Proteasome_asu_N
Homology
BLAST of EWM29805.1 vs. NCBI_GenBank
Match: gi|585112386|gb|EWM29805.1| (proteasome subunit alpha [Nannochloropsis gaditana])

HSP 1 Score: 365.54 bits (937), Expect = 5.230e-128
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0
Query:    1 MLSGDVVDVGKAEKTALSLTKQSKMTGPLRAAPMPVRGRKRYRFHASVTFGFLGFCCLVQRAQSSMGQEEARLYDRNLQHFSPEGRIYQVQYAELAARRGNPVVAVSNNQDALALCVERRRASALEEPGIAWEKVGEIQQAAWREGHCVFHRRFTAPEHFCTRSTALRRVLRGWGC 176
            MLSGDVVDVGKAEKTALSLTKQSKMTGPLRAAPMPVRGRKRYRFHASVTFGFLGFCCLVQRAQSSMGQEEARLYDRNLQHFSPEGRIYQVQYAELAARRGNPVVAVSNNQDALALCVERRRASALEEPGIAWEKVGEIQQAAWREGHCVFHRRFTAPEHFCTRSTALRRVLRGWGC
Sbjct:    1 MLSGDVVDVGKAEKTALSLTKQSKMTGPLRAAPMPVRGRKRYRFHASVTFGFLGFCCLVQRAQSSMGQEEARLYDRNLQHFSPEGRIYQVQYAELAARRGNPVVAVSNNQDALALCVERRRASALEEPGIAWEKVGEIQQAAWREGHCVFHRRFTAPEHFCTRSTALRRVLRGWGC 176          
BLAST of EWM29805.1 vs. NCBI_GenBank
Match: gi|968543741|ref|WP_058572264.1| (proteasome subunit alpha [Haloferax sp. SB29] >gi|966694677|gb|KTG27195.1| proteasome subunit alpha [Haloferax sp. SB29])

HSP 1 Score: 60.077 bits (144), Expect = 9.753e-8
Identity = 41/109 (37.61%), Postives = 56/109 (51.38%), Query Frame = 0
Query:   66 MGQEEARLYDRNLQHFSPEGRIYQVQYAELAARRGNPVVAVSNNQDALALCVERRRASALEEPGIAWEKVGEIQQ--AAWREGHCVFHRRFTAPEHFCTRSTALRRVLR 172
            M + + + YDR    FSP+GRIYQV+YA  A +RG PVV V    D + L  +R   S+L E   + EK+ ++     A   GH    R+      F  R+TA R  LR
Sbjct:    1 MNRNDKQAYDRGTSLFSPDGRIYQVEYAREAVKRGAPVVGVRTT-DGVVLAAQRSSPSSLMETK-SIEKIHKLDDNLGAASAGHVADARKLV---DFA-RTTAQRERLR 103          
BLAST of EWM29805.1 vs. NCBI_GenBank
Match: gi|1088883527|emb|SDY20162.1| (proteasome alpha subunit [Halobellus clavatus])

HSP 1 Score: 59.3066 bits (142), Expect = 1.658e-7
Identity = 41/109 (37.61%), Postives = 55/109 (50.46%), Query Frame = 0
Query:   66 MGQEEARLYDRNLQHFSPEGRIYQVQYAELAARRGNPVVAVSNNQDALALCVERRRASALEEPGIAWEKVGEIQQ--AAWREGHCVFHRRFTAPEHFCTRSTALRRVLR 172
            M + + + YDR    FSP+GRIYQV+YA  A  RG P + V  N D + L  +RR +S L E G + EK+ ++     A   GH    RR         R+ A R  LR
Sbjct:    1 MNRNDQQAYDRGTSLFSPDGRIYQVEYAREAVNRGAPSLGVRTN-DGVVLAAQRRTSSPLME-GDSIEKLHKLDDYLGAASAGHVADARRLID----GARTAAQRNRLR 103          
BLAST of EWM29805.1 vs. NCBI_GenBank
Match: gi|1124512497|ref|WP_074796861.1| (proteasome endopeptidase complex, archaeal, alpha subunit [Haloferax larsenii] >gi|1094503640|emb|SEM05398.1| proteasome alpha subunit [Haloferax larsenii])

HSP 1 Score: 59.3066 bits (142), Expect = 1.953e-7
Identity = 43/109 (39.45%), Postives = 56/109 (51.38%), Query Frame = 0
Query:   66 MGQEEARLYDRNLQHFSPEGRIYQVQYAELAARRGNPVVAVSNNQDALALCVERRRASALEEPGIAWEKVGEIQQ--AAWREGHCVFHRRFTAPEHFCTRSTALRRVLR 172
            M + + + YDR    FSP+GRIYQV+YA  A +RG PVV V   +D + L   R   S L E G + EK+ +I +   A   GH    R+      F  R TA R  LR
Sbjct:    1 MNRNDKQAYDRGTSLFSPDGRIYQVEYAREAVKRGAPVVGV-RTKDGIVLAARRSARSPLLEAG-SIEKLHKIDEGLGAASAGHVADARKLV---DFA-RETAQRERLR 103          
BLAST of EWM29805.1 vs. NCBI_GenBank
Match: gi|494808386|ref|WP_007543794.1| (proteasome endopeptidase complex,subunit alpha [Haloferax larsenii] >gi|445725787|gb|ELZ77407.1| proteasome subunit alpha [Haloferax larsenii JCM 13917])

HSP 1 Score: 58.9214 bits (141), Expect = 2.686e-7
Identity = 43/109 (39.45%), Postives = 56/109 (51.38%), Query Frame = 0
Query:   66 MGQEEARLYDRNLQHFSPEGRIYQVQYAELAARRGNPVVAVSNNQDALALCVERRRASALEEPGIAWEKVGEIQQ--AAWREGHCVFHRRFTAPEHFCTRSTALRRVLR 172
            M + + + YDR    FSP+GRIYQV+YA  A +RG PVV V   +D + L   R   S L E G + EK+ +I +   A   GH    R+      F  R TA R  LR
Sbjct:    1 MNRNDKQAYDRGTSLFSPDGRIYQVEYAREAVKRGAPVVGV-RTKDGVVLAARRSARSPLLEAG-SIEKLHKIDEGLGAASAGHVADARKLV---DFA-RETAQRERLR 103          
BLAST of EWM29805.1 vs. NCBI_GenBank
Match: gi|1004820049|gb|KYC45674.1| (Proteasome subunit alpha [Arc I group archaeon B03fssc0709_Meth_Bin005] >gi|1004822592|gb|KYC47965.1| Proteasome subunit alpha [Arc I group archaeon B15fssc0709_Meth_Bin003] >gi|1004825412|gb|KYC50583.1| Proteasome subunit alpha [Arc I group archaeon BMIXfssc0709_Meth_Bin006])

HSP 1 Score: 57.7658 bits (138), Expect = 5.799e-7
Identity = 29/67 (43.28%), Postives = 43/67 (64.18%), Query Frame = 0
Query:   74 YDRNLQHFSPEGRIYQVQYAELAARRGNPVVAVSNNQDALALCVERRRASALEEPGIAWEKVGEIQQ 140
            YDR +  FSP+G +YQVQYA  A RRG   + +  N+  + LCV++R  S L EP +++EK+ +I  
Sbjct:   10 YDRAITVFSPDGSLYQVQYAGEAVRRGATAIGIKCNE-GVVLCVDKRIPSRLVEP-VSFEKIFQIDD 74          
BLAST of EWM29805.1 vs. NCBI_GenBank
Match: gi|495600450|ref|WP_008325029.1| (proteasome endopeptidase complex,subunit alpha [Haloferax elongans] >gi|445731350|gb|ELZ82934.1| proteasome subunit alpha [Haloferax elongans ATCC BAA-1513])

HSP 1 Score: 57.3806 bits (137), Expect = 9.578e-7
Identity = 36/91 (39.56%), Postives = 49/91 (53.85%), Query Frame = 0
Query:   66 MGQEEARLYDRNLQHFSPEGRIYQVQYAELAARRGNPVVAVSNNQDALALCVERRRASALEEPGIAWEKVGEIQQ--AAWREGHCVFHRRF 154
            M + + + YDR    FSP+GRIYQV+YA  A +RG PVV V   +D + L   R   S L E G + EK+ +I +   A   GH    R+ 
Sbjct:    1 MNRNDKQAYDRGTSLFSPDGRIYQVEYAREAVKRGAPVVGV-RTKDGVVLAARRSARSPLLEAG-SIEKLHKIDEGLGAASAGHVADARKL 89          
The following BLAST results are available for this feature:
BLAST of EWM29805.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585112386|gb|EWM29805.1|5.230e-128100.00proteasome subunit alpha [Nannochloropsis gaditana... [more]
gi|968543741|ref|WP_058572264.1|9.753e-837.61proteasome subunit alpha [Haloferax sp. SB29] >gi|... [more]
gi|1088883527|emb|SDY20162.1|1.658e-737.61proteasome alpha subunit [Halobellus clavatus][more]
gi|1124512497|ref|WP_074796861.1|1.953e-739.45proteasome endopeptidase complex, archaeal, alpha ... [more]
gi|494808386|ref|WP_007543794.1|2.686e-739.45proteasome endopeptidase complex,subunit alpha [Ha... [more]
gi|1004820049|gb|KYC45674.1|5.799e-743.28Proteasome subunit alpha [Arc I group archaeon B03... [more]
gi|495600450|ref|WP_008325029.1|9.578e-739.56proteasome endopeptidase complex,subunit alpha [Ha... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna831rna831Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications