EWM29805.1, cds831 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29805.1 vs. NCBI_GenBank
Match: gi|585112386|gb|EWM29805.1| (proteasome subunit alpha [Nannochloropsis gaditana]) HSP 1 Score: 365.54 bits (937), Expect = 5.230e-128 Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0
Query: 1 MLSGDVVDVGKAEKTALSLTKQSKMTGPLRAAPMPVRGRKRYRFHASVTFGFLGFCCLVQRAQSSMGQEEARLYDRNLQHFSPEGRIYQVQYAELAARRGNPVVAVSNNQDALALCVERRRASALEEPGIAWEKVGEIQQAAWREGHCVFHRRFTAPEHFCTRSTALRRVLRGWGC 176
MLSGDVVDVGKAEKTALSLTKQSKMTGPLRAAPMPVRGRKRYRFHASVTFGFLGFCCLVQRAQSSMGQEEARLYDRNLQHFSPEGRIYQVQYAELAARRGNPVVAVSNNQDALALCVERRRASALEEPGIAWEKVGEIQQAAWREGHCVFHRRFTAPEHFCTRSTALRRVLRGWGC
Sbjct: 1 MLSGDVVDVGKAEKTALSLTKQSKMTGPLRAAPMPVRGRKRYRFHASVTFGFLGFCCLVQRAQSSMGQEEARLYDRNLQHFSPEGRIYQVQYAELAARRGNPVVAVSNNQDALALCVERRRASALEEPGIAWEKVGEIQQAAWREGHCVFHRRFTAPEHFCTRSTALRRVLRGWGC 176
BLAST of EWM29805.1 vs. NCBI_GenBank
Match: gi|968543741|ref|WP_058572264.1| (proteasome subunit alpha [Haloferax sp. SB29] >gi|966694677|gb|KTG27195.1| proteasome subunit alpha [Haloferax sp. SB29]) HSP 1 Score: 60.077 bits (144), Expect = 9.753e-8 Identity = 41/109 (37.61%), Postives = 56/109 (51.38%), Query Frame = 0
Query: 66 MGQEEARLYDRNLQHFSPEGRIYQVQYAELAARRGNPVVAVSNNQDALALCVERRRASALEEPGIAWEKVGEIQQ--AAWREGHCVFHRRFTAPEHFCTRSTALRRVLR 172
M + + + YDR FSP+GRIYQV+YA A +RG PVV V D + L +R S+L E + EK+ ++ A GH R+ F R+TA R LR
Sbjct: 1 MNRNDKQAYDRGTSLFSPDGRIYQVEYAREAVKRGAPVVGVRTT-DGVVLAAQRSSPSSLMETK-SIEKIHKLDDNLGAASAGHVADARKLV---DFA-RTTAQRERLR 103
BLAST of EWM29805.1 vs. NCBI_GenBank
Match: gi|1088883527|emb|SDY20162.1| (proteasome alpha subunit [Halobellus clavatus]) HSP 1 Score: 59.3066 bits (142), Expect = 1.658e-7 Identity = 41/109 (37.61%), Postives = 55/109 (50.46%), Query Frame = 0
Query: 66 MGQEEARLYDRNLQHFSPEGRIYQVQYAELAARRGNPVVAVSNNQDALALCVERRRASALEEPGIAWEKVGEIQQ--AAWREGHCVFHRRFTAPEHFCTRSTALRRVLR 172
M + + + YDR FSP+GRIYQV+YA A RG P + V N D + L +RR +S L E G + EK+ ++ A GH RR R+ A R LR
Sbjct: 1 MNRNDQQAYDRGTSLFSPDGRIYQVEYAREAVNRGAPSLGVRTN-DGVVLAAQRRTSSPLME-GDSIEKLHKLDDYLGAASAGHVADARRLID----GARTAAQRNRLR 103
BLAST of EWM29805.1 vs. NCBI_GenBank
Match: gi|1124512497|ref|WP_074796861.1| (proteasome endopeptidase complex, archaeal, alpha subunit [Haloferax larsenii] >gi|1094503640|emb|SEM05398.1| proteasome alpha subunit [Haloferax larsenii]) HSP 1 Score: 59.3066 bits (142), Expect = 1.953e-7 Identity = 43/109 (39.45%), Postives = 56/109 (51.38%), Query Frame = 0
Query: 66 MGQEEARLYDRNLQHFSPEGRIYQVQYAELAARRGNPVVAVSNNQDALALCVERRRASALEEPGIAWEKVGEIQQ--AAWREGHCVFHRRFTAPEHFCTRSTALRRVLR 172
M + + + YDR FSP+GRIYQV+YA A +RG PVV V +D + L R S L E G + EK+ +I + A GH R+ F R TA R LR
Sbjct: 1 MNRNDKQAYDRGTSLFSPDGRIYQVEYAREAVKRGAPVVGV-RTKDGIVLAARRSARSPLLEAG-SIEKLHKIDEGLGAASAGHVADARKLV---DFA-RETAQRERLR 103
BLAST of EWM29805.1 vs. NCBI_GenBank
Match: gi|494808386|ref|WP_007543794.1| (proteasome endopeptidase complex,subunit alpha [Haloferax larsenii] >gi|445725787|gb|ELZ77407.1| proteasome subunit alpha [Haloferax larsenii JCM 13917]) HSP 1 Score: 58.9214 bits (141), Expect = 2.686e-7 Identity = 43/109 (39.45%), Postives = 56/109 (51.38%), Query Frame = 0
Query: 66 MGQEEARLYDRNLQHFSPEGRIYQVQYAELAARRGNPVVAVSNNQDALALCVERRRASALEEPGIAWEKVGEIQQ--AAWREGHCVFHRRFTAPEHFCTRSTALRRVLR 172
M + + + YDR FSP+GRIYQV+YA A +RG PVV V +D + L R S L E G + EK+ +I + A GH R+ F R TA R LR
Sbjct: 1 MNRNDKQAYDRGTSLFSPDGRIYQVEYAREAVKRGAPVVGV-RTKDGVVLAARRSARSPLLEAG-SIEKLHKIDEGLGAASAGHVADARKLV---DFA-RETAQRERLR 103
BLAST of EWM29805.1 vs. NCBI_GenBank
Match: gi|1004820049|gb|KYC45674.1| (Proteasome subunit alpha [Arc I group archaeon B03fssc0709_Meth_Bin005] >gi|1004822592|gb|KYC47965.1| Proteasome subunit alpha [Arc I group archaeon B15fssc0709_Meth_Bin003] >gi|1004825412|gb|KYC50583.1| Proteasome subunit alpha [Arc I group archaeon BMIXfssc0709_Meth_Bin006]) HSP 1 Score: 57.7658 bits (138), Expect = 5.799e-7 Identity = 29/67 (43.28%), Postives = 43/67 (64.18%), Query Frame = 0
Query: 74 YDRNLQHFSPEGRIYQVQYAELAARRGNPVVAVSNNQDALALCVERRRASALEEPGIAWEKVGEIQQ 140
YDR + FSP+G +YQVQYA A RRG + + N+ + LCV++R S L EP +++EK+ +I
Sbjct: 10 YDRAITVFSPDGSLYQVQYAGEAVRRGATAIGIKCNE-GVVLCVDKRIPSRLVEP-VSFEKIFQIDD 74
BLAST of EWM29805.1 vs. NCBI_GenBank
Match: gi|495600450|ref|WP_008325029.1| (proteasome endopeptidase complex,subunit alpha [Haloferax elongans] >gi|445731350|gb|ELZ82934.1| proteasome subunit alpha [Haloferax elongans ATCC BAA-1513]) HSP 1 Score: 57.3806 bits (137), Expect = 9.578e-7 Identity = 36/91 (39.56%), Postives = 49/91 (53.85%), Query Frame = 0
Query: 66 MGQEEARLYDRNLQHFSPEGRIYQVQYAELAARRGNPVVAVSNNQDALALCVERRRASALEEPGIAWEKVGEIQQ--AAWREGHCVFHRRF 154
M + + + YDR FSP+GRIYQV+YA A +RG PVV V +D + L R S L E G + EK+ +I + A GH R+
Sbjct: 1 MNRNDKQAYDRGTSLFSPDGRIYQVEYAREAVKRGAPVVGV-RTKDGVVLAARRSARSPLLEAG-SIEKLHKIDEGLGAASAGHVADARKL 89 The following BLAST results are available for this feature:
BLAST of EWM29805.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 7
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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