rna8307, rna8307 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8307
Unique Name	rna8307
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3147
Alignment location	KK037248.1:334451..336455 -

Link to JBrowse

Properties


Property Name	Value
Product	beta-hydroxylase
Orig transcript id	gnl\|cribi\|Naga_100067g26.2697.mrna
Orig protein id	gnl\|cribi\|Naga_100067g26.2697
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:334451..336455 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100067g26	gene8046	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22409.1	cds8283	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8307	rna8307-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:334451..336455-
coding sequence from alignment at KK037248.1:334451..336455-

mRNA sequence

>rna8307 ID=rna8307|Name=rna8307|organism=Nannochloropsis gaditana|type=mRNA|length=3147bp
GGCTTGACTCAAGCCTGGTCGACTTCTCGATCCGTCGCTTCCATCATTTC
CCTCTCAGCTGACGCACCTGCCAGTGCCGCCAGACTGCTGTACGCCCCGC
CTCGCCTCGACCCTGATGAAAGCTCAGAAGAACACAAATAAATTTACTTT
TTTTAGAGTTAGATCGGCATGATAATTTATTATGTCGTTTGCATTGAAGA
ATCGGGACCCAAGATCGAAGGCGCCGAAGGTCTTATTACAAGCACCCCAG
CAGCGGCACACGTCTTTCAAGAGTGGGCAGGTGTAAAGGAGTTTCTTGCC
ACAAAGACCCGCAGTACTTTTTCCATTCGCCCCTTCTCCAACCTCGAAGA
TGCTCAGATATATGTACGCACTTTGGGATACCGGAAATGCGCCTCGACGG
TTGTTGGAGAGGAAAATATCGCCACTGCAACCCTGGCGGCGCCATGTGAG
GGTAGCATGAACATGTCTGCCGGTTGGATGCATTCACAGCTCGACAATAT
GTGCGCTGGAATAAATCTTGATGCATTACAATACAACGCCCTGGAGGAAG
TCCTCCTGCGGCGAAGGAACGTCTTTCTGTCGGGGTCTGGCGGCGTAGGA
AAAAGCTTCGTGACCAATTTAATCATCAACCTTTTGCGAAGACATCACGG
ACGTGCCTTTAGTAGAAAGGTGTGTATCACGGCAAGCACAGGAATCGCTA
GCACGCACGTGGACGGAACGACTTTGCACGCGGCGACAGGCGTGGGCGTG
CCCCGGTGTTGGGATCATTTCGGGCGCATGTTCTACCAGGATAAGGTGGT
GGAGAGGCGGTGGAGCAGGCACTACGAGGTGTTGTTCGTGGATGAAATCT
CCATGCTGAGTGGAGAGATGCTGGACGCATTAAATCGCATCATCCAAAAG
CTGCGTAGGAGCAAGGAGCCTTTTGGAGGGCTGCAGGTAGTATTTGTGGG
GGACTTCGCCCAGCTGCCACCGGTCCCTGAGGACCCCAGCTACACCACCA
GTGACTTTGTGAGGCGGCAAGACTGGGCCTTCGAAGGCCACGAAGATTTT
TGGCACATGCCTGTGATTAGCAGGGGCGCTCTCTTGTGCGATGCAGAGAC
ACAGGGTCCAGGTCTGGAGCGAGGGCGTGTAGCCCCCCGACGGGGAGCCC
GGCAAGAAGTGCTTTTCTCCAACCGGGGGCTGGCATTCCAGTCTGACGCA
TGGTGGGATCTAGACATGCGCGTGATTGAGTTGAAAAAGGTGTTCCGACA
GGACGACGCTCGCTTTATCGCTACCTTGAATCGAGTGCGAACCGGGCACA
CGACAGCCGAGGACTTCGACTGGCTCAATCAGGAGTTCTACCACGCCCCG
CTTCGACGGGAGCAGGCCCTCCAAGAAAGCGAACGGAAGTCAAGAGAACG
GCCGCAGTTGAAGGACGGAGGAGGGCGCGAAGAGGAGAGCGACCAGAAGA
AGAGGAAGCTGGCTTGGAAAACGGAAGGGGAGGACGGGCATGGCGTGTCC
GCGAGTGGCGGCGGGCCGGCCTCGACGAGTTTAGGAGAGGCTGCCCAGGC
TAGCTTGAGGCAGTTAGGCTCACTGGAAATGACACGGCCCGCTCCAGCCT
GCCAAATAGCAGAGGAGCCTCTGCACCTGTACCCCGTAAACGCGCTGGTG
GAGCGCCGGAACCGGGTGATGCTGGACAGGTTGCCCACCCGGCTGGAAGA
GTACGAGGCTCAGGACTTCGTCTGGCACGAGGACAGCGGGGTCATCCTCC
GTCGCCAGGAGACCGCACAAGGTTACGATGGGCGGCAACGGCGGGATCTG
GAATTATTGCTGGGAAATCACTTGTACTACAAGACGTGCCTAGCTGCAGA
GAGGGTCAAGCTGAAGTTAGGAGCCAAGATCTTGCTATTAAAAAACGTAG
ATTTATTGGGGCCGCAGAAGCTAGTCAATGGAAGCGTTGGCATGGTGGTG
GAGTGGGCACCGGAAGGAAATCCTTTTTTTGACCAGGACACATCGGGCGT
CGGGGCGGGAGCTGCCGGAGGGGAATCAGAGGAAAACTTGAGGGAGCCTA
GCCCGGCCCCGCACGCTGTCGAGACACGTCCTCCCTCCTCCGAAAATGGG
ACGGATAATAAAAGGAGCCTTCATTGCTACAAAGAGAGGCTCGTAGAGGC
GTGGTACACAGCCAACAAGAGCCGCATTCCGGTGGTTCTCTTTAGCAACG
GCCGCAAGAAGGCCATCTTCCCCGAGCTTTTTTCGGAGACAATCGTCGGC
GTCGGATGTACGTGCCGCCTGCAGCTCCCTTTGATGATCGGTTTCGCTAT
TTCTATTCACAAGTCTCAGGGAATGACCCTGCAAGAGGCTTTGGTGGACG
TCGAGCGGTGCTTTGACGGAGGCCAAACATATGTGGCGCTCAGTCGGGTT
GGACCCCGCGCGGGCCTTCGATTAGCCCAGCGTCTGAGCTACTCCAATGT
AAAAGTGAATCCTACTTTCCTCCTCTGGCACAATCTGCACAAAACAATGG
TGACGCGTCGCAGGGAAGTTCTGGCGATGCTTGAAGCGGAGGGCGATTCC
GGAGCGGTCACGCACGCGGAAGGTTTGGGCCTTAAAGGGCTGCATCAGGA
AGCAGTGGCCGTCTTGATGGATTCGACCAAGCGCGCAGAGACGCCAGTCG
CCTTGAAGCGGGCGTGGGCATCCTTGAAGAAGACGTTGGACCAGCTAAAG
CCTGGGAAGAATCTGCAAAGGCAGGACGTGGACATCCTGCACTGGCAGAT
GTTGGACTGGTGGAGGCCAGGAAATGCCCGGACTATGGAAGCAATTTATA
ATGTCAGACACTCCTTATAGATATCCCCATGTATCTATTAAGATGTGCGG
TGCGTCCGAAAACACATTAGAATAAAGGTTTCGCATGTAAAAACAAAATT
ATATTGCGTGGGATTTCCGCGGTTTCTGTAGACAACACGGCGATAAATCC
TAATCACGCGCCAACTTTTGCTTATTCTAGTCGAGACCGTAGGTCGTGTT
TTTGTGTGTCTTCAATAGACGTTTTAGGATGTACATGAGTCACATTTATG
TTATGTATGATGCTTTTCCGCAATAAGAGGCTGCTAGTGCCTTGAATAAG
CACGGATAAAACAGAGTAATCAAATGAAACGACCAAATTTCCATTCT

protein sequence of rna8307

>rna8307-protein ID=rna8307-protein|Name=rna8307|organism=Nannochloropsis gaditana|type=polypeptide|length=522bp
MPQLAWHLLPVSDIKEFLSLCRPCVGWLPLKHASSLFTLFVVDSEDTCRS
THDRKNAAVAACVRLGIHIHPLYTSEITMGSTGLLKPTSCETMLYCNDSA
TLPLRPGALDCVVFRVKDSSVGALHSSVTQLASYLTADKLTPSLFCVVIP
GYLTVDVLVAIEETFNLLLAPSFSSSPLRKDAGLRIVTLRQLTPDKVWQC
GPCVLGSVGNSPDSNGGTFGLVQLQRHSLAASSTEPEATTSPSNNPTLDS
RMRLLHLLETSLYLDLHAPGVSGSHASHSPAVSRVPASGAPVLSAEDWDY
LLPPTPSTCSLHLPNYYDDWRRHYPALRLLLENFDILRAEAAGVSSWTPW
PEYHFRDGGVENDWRVVPFLHTFPATDPGASKWIPSTCARCPAIVQVLQS
LRPALRTALLSRLGPDTRLSAHTGWEDLANHVLRVHLTLVAPPLGPNGVG
SCGTWVEGEVRCHRERDFIVFDDSKVHKAFNLHPTESRIVLIMDLVRPKY
VEAGVAVGGHTEELDKFISAFQ

mRNA from alignment at KK037248.1:334451..336455-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8307 ID=rna8307|Name=rna8307|organism=Nannochloropsis gaditana|type=mRNA|length=2005bp|location=Sequence derived from alignment at KK037248.1:334451..336455- (Nannochloropsis gaditana)
TCATGAGAGCTTTTTCCTGGCCACAACGGGGTTCAAATGCTCCCAATTGC
ACTTCTCTCAAAACCTCGAGGAATGCGATTCATCTTAATTGCCCAAAGTG
GTTTGTTGACCCTGTCTTCTCCAATTCTAGCATTCCCTTCACAGGGGCTT
GCATTTGACTCTCCCCTTTCAACAGCAAGCAAATGCCACAATTGGCGTGG
CACTTGCTACCTGTCTCCGACATCAAGGAATTTCTCTCTCTCTGTCGACC
TTGTGTGGGATGGTTACCTTTGAAGCACGCATCCAGCCTCTTTACTCTCT
TTGTCGTGGACAGCGAGGATACCTGTAGGTCCACCCACGATCGGAAGAAC
GCCGCCGTTGCCGCTTGTGTCCGACTAGGCATACATATCCACCCTCTCTA
TACCAGTGAAATTACCATGGGGAGCACTGGCCTATTAAAACCGACATCAT
GCGAGACCATGCTATACTGCAATGATAGTGCCACCCTGCCCCTGCGTCCC
GGAGCTCTGGATTGTGTTGTCTTTCGAGTGAAGGATTCGTCGGTTGGAGC
TCTGCATTCTTCTGTCACTCAGCTCGCGTCCTATCTGACAGCCGACAAAT
TGACGCCGTCCTTGTTCTGCGTCGTGATTCCAGGGTACCTGACTGTAGAC
GTCTTGGTCGCCATAGAGGAGACCTTTAACCTCTTGCTGGCTCCCTCCTT
CTCCTCCTCCCCCTTGCGTAAAGATGCAGGCTTGCGAATCGTTACACTAC
GGCAGTTGACACCGGACAAAGTGTGGCAATGTGGGCCGTGTGTCTTGGGG
AGCGTGGGCAACTCACCCGACAGCAATGGCGGCACATTCGGTCTAGTCCA
GCTACAGCGCCACAGCCTAGCTGCGAGCTCCACTGAACCTGAGGCAACCA
CAAGCCCGTCGAACAACCCCACGCTAGACAGTCGGATGCGTCTCCTTCAT
CTCCTCGAGACATCATTGTACCTGGACTTGCATGCCCCGGGCGTCTCAGG
GAGCCATGCTTCCCACAGCCCTGCCGTCTCCCGGGTCCCCGCTTCTGGCG
CCCCCGTCCTGTCCGCCGAGGACTGGGATTACCTCCTACCCCCGACTCCC
AGTACTTGTTCCTTGCACCTCCCTAATTATTACGATGACTGGCGCCGGCA
CTACCCTGCTCTCCGCCTTTTGCTCGAGAATTTTGACATCTTGAGGGCCG
AAGCCGCGGGCGTCTCCTCCTGGACCCCGTGGCCAGAGTACCACTTCCGG
GACGGGGGGGTGGAGAACGACTGGCGCGTCGTTCCATTCTTGCACACCTT
CCCCGCGACGGACCCGGGCGCCTCCAAATGGATCCCTAGCACCTGCGCCC
GGTGTCCGGCCATCGTGCAGGTCCTTCAGAGTCTGAGGCCCGCCCTGCGC
ACCGCCTTGCTCTCTCGCCTCGGCCCCGACACGCGGCTTTCCGCCCACAC
AGGCTGGGAAGATCTGGCCAATCACGTCCTGCGCGTGCATTTGACTTTGG
TGGCCCCTCCTCTAGGCCCAAACGGTGTTGGTTCCTGCGGGACATGGGTG
GAGGGAGAAGTGCGGTGTCATCGTGAGAGGGACTTCATCGTCTTCGACGA
CTCCAAAGTACACAAGGCCTTTAATCTACACCCGACAGAATCAAGAATAG
TACTTATCATGGATCTGGTTCGACCGAAGTATGTCGAGGCCGGTGTGGCT
GTAGGAGGGCACACTGAGGAGTTGGACAAGTTTATAAGTGCGTTTCAGTG
ACCCATTGGAAAGCGAGCGTAGAGTTTATCATGACCAACTTATTCAAGGC
ACTGACCAGAAATCCTAAATGAAACATTGTAGCATTAGAATGGAAATTTG
GTCGTTTCATTTGATTACTCTGTTTTATCCGTGCTTATTCAAGGCACTAG
CAGCCTCTTATTGCGGAAAAGCATCATACATAACATAAATGTGACTCATG
TACATCCTAAAACGTCTATTGAAGACACACAAAAACACGACCTACGGTCT
CGACT

Coding sequence (CDS) from alignment at KK037248.1:334451..336455-

>rna8307 ID=rna8307|Name=rna8307|organism=Nannochloropsis gaditana|type=CDS|length=1569bp|location=Sequence derived from alignment at KK037248.1:334451..336455- (Nannochloropsis gaditana)
ATGCCACAATTGGCGTGGCACTTGCTACCTGTCTCCGACATCAAGGAATT
TCTCTCTCTCTGTCGACCTTGTGTGGGATGGTTACCTTTGAAGCACGCAT
CCAGCCTCTTTACTCTCTTTGTCGTGGACAGCGAGGATACCTGTAGGTCC
ACCCACGATCGGAAGAACGCCGCCGTTGCCGCTTGTGTCCGACTAGGCAT
ACATATCCACCCTCTCTATACCAGTGAAATTACCATGGGGAGCACTGGCC
TATTAAAACCGACATCATGCGAGACCATGCTATACTGCAATGATAGTGCC
ACCCTGCCCCTGCGTCCCGGAGCTCTGGATTGTGTTGTCTTTCGAGTGAA
GGATTCGTCGGTTGGAGCTCTGCATTCTTCTGTCACTCAGCTCGCGTCCT
ATCTGACAGCCGACAAATTGACGCCGTCCTTGTTCTGCGTCGTGATTCCA
GGGTACCTGACTGTAGACGTCTTGGTCGCCATAGAGGAGACCTTTAACCT
CTTGCTGGCTCCCTCCTTCTCCTCCTCCCCCTTGCGTAAAGATGCAGGCT
TGCGAATCGTTACACTACGGCAGTTGACACCGGACAAAGTGTGGCAATGT
GGGCCGTGTGTCTTGGGGAGCGTGGGCAACTCACCCGACAGCAATGGCGG
CACATTCGGTCTAGTCCAGCTACAGCGCCACAGCCTAGCTGCGAGCTCCA
CTGAACCTGAGGCAACCACAAGCCCGTCGAACAACCCCACGCTAGACAGT
CGGATGCGTCTCCTTCATCTCCTCGAGACATCATTGTACCTGGACTTGCA
TGCCCCGGGCGTCTCAGGGAGCCATGCTTCCCACAGCCCTGCCGTCTCCC
GGGTCCCCGCTTCTGGCGCCCCCGTCCTGTCCGCCGAGGACTGGGATTAC
CTCCTACCCCCGACTCCCAGTACTTGTTCCTTGCACCTCCCTAATTATTA
CGATGACTGGCGCCGGCACTACCCTGCTCTCCGCCTTTTGCTCGAGAATT
TTGACATCTTGAGGGCCGAAGCCGCGGGCGTCTCCTCCTGGACCCCGTGG
CCAGAGTACCACTTCCGGGACGGGGGGGTGGAGAACGACTGGCGCGTCGT
TCCATTCTTGCACACCTTCCCCGCGACGGACCCGGGCGCCTCCAAATGGA
TCCCTAGCACCTGCGCCCGGTGTCCGGCCATCGTGCAGGTCCTTCAGAGT
CTGAGGCCCGCCCTGCGCACCGCCTTGCTCTCTCGCCTCGGCCCCGACAC
GCGGCTTTCCGCCCACACAGGCTGGGAAGATCTGGCCAATCACGTCCTGC
GCGTGCATTTGACTTTGGTGGCCCCTCCTCTAGGCCCAAACGGTGTTGGT
TCCTGCGGGACATGGGTGGAGGGAGAAGTGCGGTGTCATCGTGAGAGGGA
CTTCATCGTCTTCGACGACTCCAAAGTACACAAGGCCTTTAATCTACACC
CGACAGAATCAAGAATAGTACTTATCATGGATCTGGTTCGACCGAAGTAT
GTCGAGGCCGGTGTGGCTGTAGGAGGGCACACTGAGGAGTTGGACAAGTT
TATAAGTGCGTTTCAGTGA

Synonyms

Publications