rna8306, rna8306 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8306
Unique Name	rna8306
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1295
Alignment location	KK037248.1:331473..334619 +

Link to JBrowse

Properties


Property Name	Value
Product	5 -3 dna helicase
Orig transcript id	gnl\|cribi\|Naga_100067g25.2678.mrna
Orig protein id	gnl\|cribi\|Naga_100067g25.2678
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:331473..334619 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100067g25	gene8045	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8306	rna8306-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22390.1	cds8282	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:331473..334619+
coding sequence from alignment at KK037248.1:331473..334619+

mRNA sequence

>rna8306 ID=rna8306|Name=rna8306|organism=Nannochloropsis gaditana|type=mRNA|length=1295bp
ACATTTAACCAGATTGATAAACCACCCTGTGTGGCAATGGTGGTCCCCGA
TGGCACAAAAAGGCGGTGGTTGAGTCCCAACTACAAAGCGGCGAATAAAC
CTTCAAGTTCAAGTCGAAGGCGACTTGCAGTCCCAGTTGGGTGTTGGGAC
CCCAACACCGTGTCGGTGTTCCTCGACAGGTGCTACCTCTTGGCTTGTAG
GCCACTGCATGCGCGCTACGTGACTATACCGAAGGAATCACCAGGAAGGC
ACTTCGGGATTCCGGGACCATAGGAAAATGCTTCCGCGCACCACGAGACT
AACGATTCCTCTTTCTCTTATTACTGGTACAGGGACCATTCCCTACTCAG
CCTGAGAGCGAGCAAGATTCAGTGGTGGGAAATCGGATTTAACTCGCATG
AAAGGCTTTGGGGGAAAGCAAATTCTGTGTGGCTACAAGGACCCGCTCCG
TTTTGATAAACCATGTCCATATCACACGCGTCATATTGATAATCCCTATA
GCCTTTTGGCGCGTCACACCAACGCTATGCACGTCGGCAGACCTGTCAAA
ATGAGGCGTGAAACGGAGGACATGTCTGTCAGATCACGCCGCAGCAGTTC
CCGAACACGCGCTTGGGGCGAGGCGAAGGAAGCAGATTGCGTCACAGATG
CAGGACGTGGCAACAAAGTCAACAGTAATGATAACAATGATCACGACGTA
GAAGAGGATGAACGAGAGAATGGGGACGAAGAGGAGCAAGAAGAAAATTA
TTCGGGAAGGAAGCGGGTTTGAAGAAGGTTAATCGCTACAGTGAGCTCAA
GTTTGGCAAGTATGTGGGAAACATGGGTACAGGAACCACCTTGCGTTGTG
CTCCCACTTACGGGGAAAAAGATCAGCTGTGGTGGGATTTTATCGTCTAA
GCCACGTCTACAAAAGGCACGCCGTGATCGAAAAGCGAATTGTTATTTTG
GCAGGCTCGAGAAGATTCCAACGACAGAAGGCGCGGAATTGACCAAGGTG
AGCCGCGCAAAAAGTTGTTGATGCGCCACTTCACCCTTGTGAAAGCTCCC
CAGGAGCGAGATGGCCAAGGTTGGCAGTTGCCACGTGACGTCCTGGCTTG
TCACACCTTCATAGCGGAGGAAGAGTGTACCTGGGATGTAATCGACAGGG
AGTAGGTGTGTAGTACAGCATTTGTCTTGCCCATCGTAGAGGATAAAGCC
AAGTCCCTGCGACGCATCCCGCTGGATAAGGAAGGTCCTTTACAAGATGG
GAAGGTATCTGGTGGTCCCCACAAGCTATAGCTCCACGCAATCTT

protein sequence of rna8306

>rna8306-protein ID=rna8306-protein|Name=rna8306|organism=Nannochloropsis gaditana|type=polypeptide|length=883bp
MIIYYVVCIEESGPKIEGAEGLITSTPAAAHVFQEWAGVKEFLATKTRST
FSIRPFSNLEDAQIYVRTLGYRKCASTVVGEENIATATLAAPCEGSMNMS
AGWMHSQLDNMCAGINLDALQYNALEEVLLRRRNVFLSGSGGVGKSFVTN
LIINLLRRHHGRAFSRKVCITASTGIASTHVDGTTLHAATGVGVPRCWDH
FGRMFYQDKVVERRWSRHYEVLFVDEISMLSGEMLDALNRIIQKLRRSKE
PFGGLQVVFVGDFAQLPPVPEDPSYTTSDFVRRQDWAFEGHEDFWHMPVI
SRGALLCDAETQGPGLERGRVAPRRGARQEVLFSNRGLAFQSDAWWDLDM
RVIELKKVFRQDDARFIATLNRVRTGHTTAEDFDWLNQEFYHAPLRREQA
LQESERKSRERPQLKDGGGREEESDQKKRKLAWKTEGEDGHGVSASGGGP
ASTSLGEAAQASLRQLGSLEMTRPAPACQIAEEPLHLYPVNALVERRNRV
MLDRLPTRLEEYEAQDFVWHEDSGVILRRQETAQGYDGRQRRDLELLLGN
HLYYKTCLAAERVKLKLGAKILLLKNVDLLGPQKLVNGSVGMVVEWAPEG
NPFFDQDTSGVGAGAAGGESEENLREPSPAPHAVETRPPSSENGTDNKRS
LHCYKERLVEAWYTANKSRIPVVLFSNGRKKAIFPELFSETIVGVGCTCR
LQLPLMIGFAISIHKSQGMTLQEALVDVERCFDGGQTYVALSRVGPRAGL
RLAQRLSYSNVKVNPTFLLWHNLHKTMVTRRREVLAMLEAEGDSGAVTHA
EGLGLKGLHQEAVAVLMDSTKRAETPVALKRAWASLKKTLDQLKPGKNLQ
RQDVDILHWQMLDWWRPGNARTMEAIYNVRHSL

mRNA from alignment at KK037248.1:331473..334619+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8306 ID=rna8306|Name=rna8306|organism=Nannochloropsis gaditana|type=mRNA|length=3147bp|location=Sequence derived from alignment at KK037248.1:331473..334619+ (Nannochloropsis gaditana)
GGCTTGACTCAAGCCTGGTCGACTTCTCGATCCGTCGCTTCCATCATTTC
CCTCTCAGCTGACGCACCTGCCAGTGCCGCCAGACTGCTGTAcgccccgc
ctcgcctcgACCCTGATGAAAGCTCAGAAGAACACAAATAAATTTACTTT
TTTTAGAGTTAGATCGGCATGATAATTTATTATGTCGTTTGCATTGAAGA
ATCGGGACCCAAGATCGAAGGCGCCGAAGGTCTTATTACAAGCACCCCAG
CAGCGGCACACGTCTTTCAAGAGTGGGCAGGTGTAAAGGAGTTTCTTGCC
ACAAAGACCCGCAGTACTTTTTCCATTCGCCCCTTCTCCAACCTCGAAGA
TGCTCAGATATATGTACGCACTTTGGGATACCGGAAATGCGCCTCGACGG
TTGTTGGAGAGGAAAATATCGCCACTGCAACCCTGGCGGCGCCATGTGAG
GGTAGCATGAACATGTCTGCCGGTTGGATGCATTCACAGCTCGACAATAT
GTGCGCTGGAATAAATCTTGATGCATTACAATACAACGCCCTGGAGGAAG
TCCTCCTGCGGCGAAGGAACGTCTTTCTGTCGGGGTCTGGCGGCGTAGGA
AAAAGCTTCGTGACCAATTTAATCATCAACCTTTTGCGAAGACATCACGG
ACGTGCCTTTAGTAGAAAGGTGTGTATCACGGCAAGCACAGGAATCGCTA
GCACGCACGTGGACGGAACGACTTTGCACGCGGCGACAGGCGTGGGCGTG
CCCCGGTGTTGGGATCATTTCGGGCGCATGTTCTACCAGGAtaaggtggt
ggagaggcggtggagcagGCACTACGAGGTGTTGTTCGTGGATGAAATCT
CCATGCTGAGTGGAGAGATGCTGGACGCATTAAATCGCATCATCCAAAAG
CTGCGTAGGAGCAAGGAGCCTTTTGGAGGGCTGCAGGTAGTATTTGTGGG
GGACTTCGCCCAGCTGCCACCGGTCCCTGAGGACCCCAGCTACACCACCA
GTGACTTTGTGAGGCGGCAAGACTGGGCCTTCGAAGGCCACGAAGATTTT
TGGCACATGCCTGTGATTAGCAGGGGCGCTCTCTTGTGCGATGCAGAGAC
ACAGGGTCCAGGTCTGGAGCGAGGGCGTGTAGCCCCCCGACGGGGAGCCC
GGCAAGAAGTGCTTTTCTCCAACCGGGGGCTGGCATTCCAGTCTGACGCA
TGGTGGGATCTAGACATGCGCGTGATTGAGTTGAAAAAGGTGTTCCGACA
GGACGACGCTCGCTTTATCGCTACCTTGAATCGAGTGCGAACCGGGCACA
CGACAGCCGAGGACTTCGACTGGCTCAATCAGGAGTTCTACCACGCCCCG
CTTCGACGGGAGCAGGCCCTCCAAGAAAGCGAACGGAAGTCAAGAGAACG
GCCGCAGTtgaaggacggaggagggcgcgaagaggagagcgaccagaaga
agaggaagctggCTTGGAAaacggaaggggaggacgggcatgGCGTGTCC
GCGAGTGGCGGCGGGCCGGCCTCGACGAGTTTAGGAGAGGCTGCCCAGGC
TAGCTTGAGGCAGTTAGGCTCACTGGAAATGACACGGCCCGCTCCAGCCT
GCCAAATAGCAGAGGAGCCTCTGCACCTGTACCCCGTAAACGCGCTGGTG
GAGCGCCGGAACCGGGTGATGCTGGACAGGTTGCCCACCCGGCTGGAAGA
GTACGAGGCTCAGGACTTCGTCTGGCACGAGGACAGCGGGGTCATCCTCC
GTCGCCAGGAGACCGCACAAGGTTACGATGGGCGGCAACGGCGGGATCTG
GAATTATTGCTGGGAAATCACTTGTACTACAAGACGTGCCTAGCTGCAGA
GAGGGTCAAGCTGAAGTTAGGAGCCAAGATCTTGCTATTAAAAAACGTAG
ATTTATTGGGGCCGCAGAAGCTAGTCAATGGAAGCGTTGGCATGGTGGTG
GAGTGGGCACCGGAAGGAAATCCTTTTTTTGACCAGGACACATCGGGCGT
CGGGGCGGGAGCTGCCGGAGGGGAATCAGAGGAAAACTTGAGGGAGCCTA
GCCCGGCCCCGCACGCTGTCGagacacgtcctccctcctccgaaaATGGG
ACGGATAATAAAAGGAGCCTTCATTGCTACAAAGAGAGGCTCGTAGAGGC
GTGGTACACAGCCAACAAGAGCCGCATTCCGGTGGTTCTCTTTAGCAACG
GCCGCAAGAAGGCCATCTTCCCCGAGCTTTTTTCGGAGACAATCGTCGGC
GTCGGATGTACGTGCCGCCTGCAGCTCCCTTTGATGATCGGTTTCGCTAT
TTCTATTCACAAGTCTCAGGGAATGACCCTGCAAGAGGCTTTGGTGGACG
TCGAGCGGTGCTTTGACGGAGGCCAAACATATGTGGCGCTCAGTCGGGTT
GGACCCCGCGCGGGCCTTCGATTAGCCCAGCGTCTGAGCTACTCCAATGT
AAAAGTGAATcctactttcctcctctggcACAATCTGCACAAAACAATGG
TGACGCGTCGCAGGGAAGTTCTGGCGATGCTTGAAGCGGAGGGCGATTCC
GGAGCGGTCACGCACGCGGAAGGTTTGGGCCTTAAAGGGCTGCATCAGGA
AGCAGTGGCCGTCTTGATGGATTCGACCAAGCGCGCAGAGACGCCAGTCG
CCTTGAAGCGGGCGTGGGCATCCTTGAAGAAGACGTTGGACCAGCTAAAG
CCTGGGAAGAATCTGCAAAGGCAGGACGTGGACATCCTGCACTGGCAGAT
GTTGGACTGGTGGAGGCCAGGAAATGCCCGGACTATGGAAGCAATTTATA
ATGTCAGACACTCCTTATAGATATCCCCATGTATCTATTAAGATGTGCGG
TGCGTCCGAAAACACATTAGAATAAAGGTTTCGCATGTAAAAACAAAATT
ATATTGCGTGGGATTTCCGCGGTTTCTGTAGACAACACGGCGATAAATCC
TAATCACGCGCCAACTTTTGCTTATTCTAGTCGAGACCGTAGGTCGTGTT
TTTGTGTGTCTTCAATAGACGTTTTAGGATGTACATGAGTCACATTTATG
TTATGTATGATGCTTTTCCGCAATAAGAGGCTGCTAGTGCCTTGAATAAG
CACGGATAAAACAGAGTAATCAAATGAAACGACCAAATTTCCATTCT

Coding sequence (CDS) from alignment at KK037248.1:331473..334619+

>rna8306 ID=rna8306|Name=rna8306|organism=Nannochloropsis gaditana|type=CDS|length=2652bp|location=Sequence derived from alignment at KK037248.1:331473..334619+ (Nannochloropsis gaditana)
ATGATAATTTATTATGTCGTTTGCATTGAAGAATCGGGACCCAAGATCGA
AGGCGCCGAAGGTCTTATTACAAGCACCCCAGCAGCGGCACACGTCTTTC
AAGAGTGGGCAGGTGTAAAGGAGTTTCTTGCCACAAAGACCCGCAGTACT
TTTTCCATTCGCCCCTTCTCCAACCTCGAAGATGCTCAGATATATGTACG
CACTTTGGGATACCGGAAATGCGCCTCGACGGTTGTTGGAGAGGAAAATA
TCGCCACTGCAACCCTGGCGGCGCCATGTGAGGGTAGCATGAACATGTCT
GCCGGTTGGATGCATTCACAGCTCGACAATATGTGCGCTGGAATAAATCT
TGATGCATTACAATACAACGCCCTGGAGGAAGTCCTCCTGCGGCGAAGGA
ACGTCTTTCTGTCGGGGTCTGGCGGCGTAGGAAAAAGCTTCGTGACCAAT
TTAATCATCAACCTTTTGCGAAGACATCACGGACGTGCCTTTAGTAGAAA
GGTGTGTATCACGGCAAGCACAGGAATCGCTAGCACGCACGTGGACGGAA
CGACTTTGCACGCGGCGACAGGCGTGGGCGTGCCCCGGTGTTGGGATCAT
TTCGGGCGCATGTTCTACCAGGAtaaggtggtggagaggcggtggagcag
GCACTACGAGGTGTTGTTCGTGGATGAAATCTCCATGCTGAGTGGAGAGA
TGCTGGACGCATTAAATCGCATCATCCAAAAGCTGCGTAGGAGCAAGGAG
CCTTTTGGAGGGCTGCAGGTAGTATTTGTGGGGGACTTCGCCCAGCTGCC
ACCGGTCCCTGAGGACCCCAGCTACACCACCAGTGACTTTGTGAGGCGGC
AAGACTGGGCCTTCGAAGGCCACGAAGATTTTTGGCACATGCCTGTGATT
AGCAGGGGCGCTCTCTTGTGCGATGCAGAGACACAGGGTCCAGGTCTGGA
GCGAGGGCGTGTAGCCCCCCGACGGGGAGCCCGGCAAGAAGTGCTTTTCT
CCAACCGGGGGCTGGCATTCCAGTCTGACGCATGGTGGGATCTAGACATG
CGCGTGATTGAGTTGAAAAAGGTGTTCCGACAGGACGACGCTCGCTTTAT
CGCTACCTTGAATCGAGTGCGAACCGGGCACACGACAGCCGAGGACTTCG
ACTGGCTCAATCAGGAGTTCTACCACGCCCCGCTTCGACGGGAGCAGGCC
CTCCAAGAAAGCGAACGGAAGTCAAGAGAACGGCCGCAGTtgaaggacgg
aggagggcgcgaagaggagagcgaccagaagaagaggaagctggCTTGGA
AaacggaaggggaggacgggcatgGCGTGTCCGCGAGTGGCGGCGGGCCG
GCCTCGACGAGTTTAGGAGAGGCTGCCCAGGCTAGCTTGAGGCAGTTAGG
CTCACTGGAAATGACACGGCCCGCTCCAGCCTGCCAAATAGCAGAGGAGC
CTCTGCACCTGTACCCCGTAAACGCGCTGGTGGAGCGCCGGAACCGGGTG
ATGCTGGACAGGTTGCCCACCCGGCTGGAAGAGTACGAGGCTCAGGACTT
CGTCTGGCACGAGGACAGCGGGGTCATCCTCCGTCGCCAGGAGACCGCAC
AAGGTTACGATGGGCGGCAACGGCGGGATCTGGAATTATTGCTGGGAAAT
CACTTGTACTACAAGACGTGCCTAGCTGCAGAGAGGGTCAAGCTGAAGTT
AGGAGCCAAGATCTTGCTATTAAAAAACGTAGATTTATTGGGGCCGCAGA
AGCTAGTCAATGGAAGCGTTGGCATGGTGGTGGAGTGGGCACCGGAAGGA
AATCCTTTTTTTGACCAGGACACATCGGGCGTCGGGGCGGGAGCTGCCGG
AGGGGAATCAGAGGAAAACTTGAGGGAGCCTAGCCCGGCCCCGCACGCTG
TCGagacacgtcctccctcctccgaaaATGGGACGGATAATAAAAGGAGC
CTTCATTGCTACAAAGAGAGGCTCGTAGAGGCGTGGTACACAGCCAACAA
GAGCCGCATTCCGGTGGTTCTCTTTAGCAACGGCCGCAAGAAGGCCATCT
TCCCCGAGCTTTTTTCGGAGACAATCGTCGGCGTCGGATGTACGTGCCGC
CTGCAGCTCCCTTTGATGATCGGTTTCGCTATTTCTATTCACAAGTCTCA
GGGAATGACCCTGCAAGAGGCTTTGGTGGACGTCGAGCGGTGCTTTGACG
GAGGCCAAACATATGTGGCGCTCAGTCGGGTTGGACCCCGCGCGGGCCTT
CGATTAGCCCAGCGTCTGAGCTACTCCAATGTAAAAGTGAATcctacttt
cctcctctggcACAATCTGCACAAAACAATGGTGACGCGTCGCAGGGAAG
TTCTGGCGATGCTTGAAGCGGAGGGCGATTCCGGAGCGGTCACGCACGCG
GAAGGTTTGGGCCTTAAAGGGCTGCATCAGGAAGCAGTGGCCGTCTTGAT
GGATTCGACCAAGCGCGCAGAGACGCCAGTCGCCTTGAAGCGGGCGTGGG
CATCCTTGAAGAAGACGTTGGACCAGCTAAAGCCTGGGAAGAATCTGCAA
AGGCAGGACGTGGACATCCTGCACTGGCAGATGTTGGACTGGTGGAGGCC
AGGAAATGCCCGGACTATGGAAGCAATTTATAATGTCAGACACTCCTTAT
AG

Synonyms

Publications