rna8304, rna8304 (mRNA) Nannochloropsis gaditana

Overview
Namerna8304
Unique Namerna8304
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1875
Alignment locationKK037248.1:326725..327783 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100067g22.2688.mrna
Orig protein idgnl|cribi|Naga_100067g22.2688
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:326725..327783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100067g22gene8043Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22400.1cds8280Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8304rna8304-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8304 ID=rna8304|Name=rna8304|organism=Nannochloropsis gaditana|type=mRNA|length=1875bp
TAGATGCCACACGGTTCCTAGTGGACGCTCTGTCCTCGGCGCCTTCGCGA
TGACCCTCAATTTTACTGACCAAGCCATCAGGAATACCGGTACCCAATCC
GGAGCCCCGATGCATGACTCCACCACCACCCATTCTTTCTTGCGGCTTGA
CCAGCACTTGAGCGGTCATTTGTATGCCTTTTTGCTGGTGAGAGACTTGT
TGTCCTTTTCGAACACATCCAAGGACGTGCTTTTGTATGTGTTGACTTCA
CAGTATTGGTTCACTTTGTGCGCGAGGAGGTGGCCAGCGCTGCTGCTATC
GCCTGCCAGTGTGAGCGCCTTCTCTCCTGCCTATGGCTCGAGGCTTTATC
CCCTCAAAAGAAGTGTAGTGAGAAACGAACCGACCGAGGAATATGTTTCC
TGTCTACCGTCCTCGCGTGCATACAAAAATGCGATGGAAAGAAATTGCTT
CCGCTCCATTTTTTTGCAGCATGCCGAGGCAGAGCTGAACTGGCGGCGGG
GCCGACCCACGACGGTAATACAAGAACGCCTTGAAATGCCAAAAGAAGTG
TCTTCCTCGCCTGTGAAAGCGCTCGCACTTGTCAGAGTTGGTACCCGTGA
GGTGATGCTGGCTGCAAAACGTTACCATGTGGGCGCATATCGTGTGGGTG
ACTCCGGGCATCTGCCCTTGTCGAAAGGGCCCGAGCTTTTGCTCCGAGCC
AAGAGTGGAAATTCCATGATCTACACCATGGTTGTGGCTTCTGGTGACCC
AGCCAAGCTCTTGGTTGCCGGGAATGACACAGGGGTGGAAGTCTTGGATT
GGACGGTGGGGCGCAAACTAGCGAGTCTGCACCATCACGCCTCCAGCGTC
TGGTGCCTGGGCGTGGACACAGACAGCCACCCAGACGCAGCCGAGGCCTG
CGGCCAGGCGGGCGGCACCTTGATGGTCGCGTCCGGAGGCTACTGTAGCC
TGGCCCTCTCGGATGTGGACAGGCAGGCGGAGGCCGCCATCGCCTTCCAT
GGGCATCAGTCGTGGATCCGAGGCGTGCACTTGGACATGGGCCGACACCT
TTTGATCACCGGCTCGGCGGACGCCACCTGCAAGGCCTGGGACCTTCGCC
GGCCTGGGCGTGTGCTCACAAAATTCGTGCACCCGAATCATTTCGAGGAA
GTCAGGTGTCTGGAGTGTGCGGGGCCCCGGCTGGTCACCGGGTGCTACGA
CGGGGTCGTGCGGGAGTACGACTTGGGCACCGGACGCTATGTGAGCACGC
TGGCCAAGCACGAGTACGCGGTGGAGACCATGCAATTGTCGCGGGAGACG
GGCCGTCTCGTCAGCGTGGATTGGGACGGGCAGGTCGCCTACAACAGGGG
GATGGCCTACCTGTCGCGTACCTTCGGGGCTCAGTCTGTCGACACGCTCG
CCCTCGTGCATGATGTCGGGGAAATGCAGGATATTAGTAGAGACGCGTTT
GGGCGTGCATCGGGCGGCAGCAACCATTTTGTTCGGCCCCGCTATGAAGA
CAAGCACCATGGCAAGATCATCGGCTGCGATCTCCAGGCGTCCGCGCTCT
TCCACAGCGAGGACGGGATCTCCCACACCCGGACCTCCGTGGCGTGCATG
CAGCATGATGAGGAGCGCCTTGTTCTGGGGACAACGGGTGGTAACGTTGT
CTCCCTGCTATTCAGGAAAAGCTTGAATAAATGACGAGCACAGTGAGGCC
GATAACGTGGGAGCGTCGCAGAAATCTAGTCCAGCCTCCTTTATCCATTT
GTTTTACCAAATTTAAGAAATTTAAAGAAAATATTACCCCAAGACGACAT
GCACATCTGATAGACACTGGACACCCAAGGGGTTGAAATGAAATTCCGGA
AAAGAAACGTAAACTGATGGCTCCT
back to top

protein sequence of rna8304

>rna8304-protein ID=rna8304-protein|Name=rna8304|organism=Nannochloropsis gaditana|type=polypeptide|length=189bp
MRVLAWTNAALNVALSVELRSGSSPSRIFPTGALGYVTRPSCLEGLVMST
EGGSSGTNDDGRRRASFSSAEHLPASSITTSAHGMEDQHKPAEEKGALPP
PVVPEKEMKKMRKKAAKAAKREKRESNKLSLKPCVICNRDQDLLIRCQVD
SSLEWKMVCGKCWREVSGGVVDGDAAHPHYRYGGLWKAR
back to top

mRNA from alignment at KK037248.1:326725..327783-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8304 ID=rna8304|Name=rna8304|organism=Nannochloropsis gaditana|type=mRNA|length=1059bp|location=Sequence derived from alignment at KK037248.1:326725..327783- (Nannochloropsis gaditana)
GGAGTATAGTCTTTCCCTCGGGGAAGAAGGTGTTGTCATAGCTTTACCTA
TTTGGTATTTCTCTGAGCCTTCCTTTCCAATGTGGGTACTGTCAGTCCAT
ATGGTTATTGCCATATCTATGGGACGGATTGGCAGAAGAGAGTGGGACTC
CTACCAACGGGTCTGTGTGACCCGGATCTGCTTGTAAAACACGCGCACGC
ACGAAGGAATCATGAACCTAGAGACATTCTGTACAGCTCTTGTCTTTGTG
TCTCTGAGCTTATAATGTGAGCTCACCCGGAATTGTCACATTACTTCCCC
GAGGTCGTTCCCTCACCCTCGTAGAGCTCGCTGCTAACTTTGCTCTTAGG
GGCCACCCGACCGCTTTGTACATGTGTTCCTCAACCCTCATGTCGAGCAG
CAACTTTGCTTTGAAACCTCAACTACATCCTGTGCCACCCTTCAGACCGT
ATGCGAGTTTTAGCGTGGACAAACGCTGCCTTGAACGTTGCACTTTCGGT
CGAGCTTCGCTCAGGCTCGTCTCCATCAAGAATTTTTCCCACGGGCGCTC
TTGGTTACGTCACACGACCCAGCTGCTTGGAGGGTCTGGTCATGTCTACG
GAAGGTGGCTCAAGCGGTACCAATGATGATGGGCGAAGAAGAGCGAGTTT
TTCTTCCGCAGAACATTTACCTGCATCATCAATCACTACAAGTGCTCATG
GCATGGAAGATCAACACAAGCCTGCTGAAGAGAAAGGAGCCCTACCGCCG
CCTGTTGTGCCAGAAAAGGAAATGAAGAAGATGCGAAAAAAAGCGGCCAA
GGCTGCCAAGCGTGAAAAACGTGAAAGTAATAAATTATCTCTCAAGCCTT
GTGTCATCTGCAACCGGGACCAAGACCTGCTGATCCGTTGTCAGGTTGAT
TCTTCACTGGAATGGAAGATGGTGTGCGGAAAATGTTGGAGGGAAGTTAG
CGGGGGAGTCGTAGACGGTGATGCTGCGCACCCACACTATCGATACGGTG
GCCTATGGAAGGCTCGATAGTTGCTAAGGGGCTTGGGTAAAGTAAAAATG
ACGGGATGA
back to top

Coding sequence (CDS) from alignment at KK037248.1:326725..327783-

>rna8304 ID=rna8304|Name=rna8304|organism=Nannochloropsis gaditana|type=CDS|length=570bp|location=Sequence derived from alignment at KK037248.1:326725..327783- (Nannochloropsis gaditana)
ATGCGAGTTTTAGCGTGGACAAACGCTGCCTTGAACGTTGCACTTTCGGT
CGAGCTTCGCTCAGGCTCGTCTCCATCAAGAATTTTTCCCACGGGCGCTC
TTGGTTACGTCACACGACCCAGCTGCTTGGAGGGTCTGGTCATGTCTACG
GAAGGTGGCTCAAGCGGTACCAATGATGATGGGCGAAGAAGAGCGAGTTT
TTCTTCCGCAGAACATTTACCTGCATCATCAATCACTACAAGTGCTCATG
GCATGGAAGATCAACACAAGCCTGCTGAAGAGAAAGGAGCCCTACCGCCG
CCTGTTGTGCCAGAAAAGGAAATGAAGAAGATGCGAAAAAAAGCGGCCAA
GGCTGCCAAGCGTGAAAAACGTGAAAGTAATAAATTATCTCTCAAGCCTT
GTGTCATCTGCAACCGGGACCAAGACCTGCTGATCCGTTGTCAGGTTGAT
TCTTCACTGGAATGGAAGATGGTGTGCGGAAAATGTTGGAGGGAAGTTAG
CGGGGGAGTCGTAGACGGTGATGCTGCGCACCCACACTATCGATACGGTG
GCCTATGGAAGGCTCGATAG
back to top
Synonyms
Publications