rna8296, rna8296 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8296
Unique Name	rna8296
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1824
Alignment location	KK037248.1:305873..308625 +

Link to JBrowse

Properties


Property Name	Value
Product	4-phosphopantetheinyl transferase entd
Orig transcript id	gnl\|cribi\|Naga_100067g13.2699.mrna
Orig protein id	gnl\|cribi\|Naga_100067g13.2699
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:305873..308625 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100067g13	gene8036	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8296	rna8296-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22411.1	cds8272	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:305873..308625+
coding sequence from alignment at KK037248.1:305873..308625+

mRNA sequence

>rna8296 ID=rna8296|Name=rna8296|organism=Nannochloropsis gaditana|type=mRNA|length=1824bp
ATGACTCAGAGTTTCAGGGCATTGTTAAACTTACTAGAACGGGTGGACTC
TGAGGAGGAGGCGGTGGCGGCATTAGAAGAATTCTTGATTCTGGCACAGG
ACAGGCCCTTCACATGCCAAGAACGCGATAAAGCCTTTTGCGCGAGCTCC
CATCTAGTGCAACGCGGTATTCTCTCCGAGGCCCACCCGCTTATGAAATT
TTTAGATTACCGTCTTCAGCCTGCTTATCTTCCCGGAGTCTCCGAGCTCC
GATTGCCATCGGCTAATTCGCTTGAATCATCAATATCTCTTCGACACTCT
CCACACCTGAGCAGCCACAAATTTGTCAGAAACGGCAACAGCTGCAACAC
CAAGAAGTCCTACCAAGCTGAGCCCACCCATGCCTCGGACGATTTCCCAC
CCCCATTGGTCACCAATCCACCGAAGCAGGGCTACGTTCCGCACGACTTT
CTCTTCCGACGAGTCCCCCCGGAGACCAAGATGCTGTGCACAATCAGACG
GCTGCCGTCGAATAGCAAGGCCGTAAGCCCCACGTACCGCCTGTTCCTCG
AGAGGGTGCTGGTCTCCAACGATGCCGTGCGAATGGTCCGTCAGGAAGAC
CTTGCAAAAGATGCGATCACGATGCATCCGCGCGCCGTGATGTCGGAGGA
ATGTGAAGGTGCCAGGTTCCCCGGCGCCCCGTCCTTGGAGGCCGACCGCC
CCCACTGTCTGTGCACTGTCCGGGCTCAAAAGGCCGGCGACGGAAGCAAC
AGCGCTGGGAAAGCACCTTGCTCCCCGTTGCCGCGCGTGACGACCGAGAC
CAGAAGCTTCTGCGTCCTGGCCGTCTTGGCCCCCCCTGCCGCCGCCTCCA
CGCTCCCCCTAGCCTCCGATCCCAGGGGGGACACGGGCGAGGAGGAGGGG
GCCCTTCCGCTCGGTTGGCTGCACAGGCCTTGTCGAGGCGTTTGGACCGC
CGTTTCGACCTCATCGGCGGACGCGAATATCCTCACACCCCACCTTGCCG
TCCACATCTCCGAAGCCCGCTCCCGGCTACTCTTTCTCTCGGTGGTGCTG
CGCACCGACGGCCAAGACACGCCGAACCCATTTCGGCAGCATCACGTTTT
CCAAGTGCCGTTGGCTCACCTACAATCTCCATGTGCCTCTTCCCTTGCGA
ACGAGAATTCGATGCCTACGGGCTGGAATGCCTGGGGAATGCGCCACATC
AAAAGCAAAGTCGGGTCCAACCCTTCTGCCTTGCCCTCCCGCGCTCCCAA
CGTCGATCCACCCACGCCTGCCTCCTCATCGTCAGAGACTCCCATCAGCC
TCCCCTCCTCCTCATCTTCCTCCCCCCTGGCCGGTCCCCCGGTCGCCCCT
TCTTCCCCTCGTGTCCTCACGCTGCACAGCCAACTGCCCGCATGGGATCC
GGCCAGGGGCCTCCATGCGCTCGACTTCGAGATGGGCGAGCAACGGGTGC
CGCTTCCTTCGCGGAAGAACCTGGTGGTGGTGGAGGCGACTGCATCTTCG
CTTCAAGACTATGCTGCGGGACTGACGGAGGTCAGGGCCTCCGGGCACAG
GGCGGAAGGCGGGAGCGGCGCCAGGAGGCGAGGAAGGACCGCTGTCAGGA
CGCGGGTTGGCTTGAGTCATCTGGGCGGGGGGCTAGGGCTTCGAAGAGGA
GAGAGGAGCGGCGTGGACGATGCCGCGGCCTCGGAGTGGGGCACCCTGGA
GCGACCGCGCTTCGCCTGCCAGTTGGGCAAGCTGAGCGAGGATGCCTACA
GCCTGGATTTTCGCGCGCCGTTCTCACCCTTTCAGGCCCTGGCTGTGGCA
GTGGCGGCTTTGGAGGAATATTGA

protein sequence of rna8296

>rna8296-protein ID=rna8296-protein|Name=rna8296|organism=Nannochloropsis gaditana|type=polypeptide|length=388bp
MTPALRRPPPTLSVIVLLLHMGLISMVKARGSWSRSLTARVEVKEAFRDQ
NAAFVDCHSRVRLSRPTRQPGASSYYFTSVTSKSMYPSTVPPCSICLNTV
VSTSRASDICFDGRLTAEQLFPTSFELDMPPMGHVLALRLPVSSVSQDPD
REWDLSILLDSSTMDTVSRSAAKFPTLLHPKELDLAMNMSNLDSRLAFLG
GRLALRRSLRKLPQPIRIEQAVLRDEKGAPALPSHVQASISHKQDLAICL
LRSVEEDPNRALSNIGVDIEICQPRPSTNSIATRVLTRREQDELGGLASL
GISGESELLLRFSLKESVYKAIYPFLRRYVAFQEAEVTPHVDGTSTIVLF
LKGGAAEGLFEAEGHWRQVDNGRFFLTAVWVRKVEIRS

mRNA from alignment at KK037248.1:305873..308625+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8296 ID=rna8296|Name=rna8296|organism=Nannochloropsis gaditana|type=mRNA|length=2753bp|location=Sequence derived from alignment at KK037248.1:305873..308625+ (Nannochloropsis gaditana)
CCAAAAAACAAATCAGGCTCCGAGGGGCGAGCAGTAAAGACCCAAAGAGC
GTGTGGGGCGCTATAGGAACGTACAGCCGTCCCGGCCAATGACCCCAGCC
TTAcggcgacctcctcccactctctcCGTcatcgtccttctccttcataT
GGTGAGTAAAACCGCGCACATTTGGACGCTTGCATATATGCGCTCATATC
TTTCACTTTACAAAACCGATAGGGCCTCATCTCTATGGTGAAAGCCAGAG
GGAGCTGGTCACGTTCATTGACTGCCCGAGTTGAAGTCAAGGAAGCTTTT
CGGGATCAGAATGGTAAGGATCCGTGCATTATACCCGCTGCCATCCTAAA
GTGACGATGCCTAAGACAACATATCATATGTTCTCGTATCCTCTAGCCGC
ATTCGTCGATTGCCACTCCAGAGTCAGACTTTCGAGGCCTACGCGACAGC
CAGGTGCATCGTCATATTACTTTACCTCCGTCACGTCCAAGTCCATGTAC
CCCTCGACCGTTCCGCCTTGCAGCATATGTCTCAATACCGTCGTATCAAC
CTCTCGAGCATCTGACATATGCTTTGATGGGAGACTGACAGCAGAGCAGC
TCTTCCCGACGTCCTTTGAGCTCGATATGCCGCCCATGGGCCACGTACTG
GCCTTGCGTCTGCCTGTATCCTCCGTATCACAAGACCCCGATCGCGAGTG
GGACCTTTCCATTCTCCTAGATAGTTCGACGATGGACACGGTATCCCGAT
CTGCAGCGAAGTTTCCGACCCTACTGCATCCAAAAGAGCTCGATCTTGCC
ATGAACATGAGCAACCTGGATTCGCGCCTTGCATTTCTGGGAGGGCGTCT
GGCACTGCGGCGGAGTTTGCGCAAACTTCCACAGCCCATCAGGATAGAAC
AGGCTGTGCTTcgggacgagaaaggggcgCCGGCATTGCCCTCCCACGTG
CAAGCGTCAATAAGCCACAAACAAGATCTGGCAATTTGTCTGCTGCGTTc
ggtcgaggaggacccGAATCGTGCATTGTCCAACATTGGCGTGGACATAG
AGATTTGCCAGCCTCGACCCAGCACAAATAGCATTGCAACACGTGTGCTC
ACTAGAAGGGAGCAGGATGAGTTGGGCGGTCTGGCTTCACTGGGGATCAG
TGGAGAGAGCGAGCTCTTGCTTCGGTTTTCTCTGAAAGAGAGCGTCTACA
AGGCCATTTACCCGTTCCTGCGCCGGTACGTAGCTTTTCAAGAGGCGGAA
GTGACCCCACACGTGGACGGCACGTCTACGATCGTCCTGTtcctgaaggg
aggggccgcggagggcttgttcgaggcggaggggcatTGGCGGCAAGTGG
ATAATGGCAGGTTCTTCTTGACAGCGGTGTGGGTCAGAAAAGTTGAAATA
AGGTCGTGAAGCTTGGCGTTGTAAGGACAGGAATGGTGCAGAGCGAAGAT
AcgggatgggaaggggaggaggaacgcaAGTTTGTGCTGGTAACccaatt
tttttaaaatacgTCTGTCAACGTGACCGTTCAGATGGAGAATTACTCAG
GTCCAGGGTATTTTTGGGGGTTATTCTTCAATTTCTCCTACGCAATCTCC
ATCATTTCTGGAGAGTTCGTGGAAATACACGCGGATGTGATGACATATCC
AGCGCAAAGGCGCTGTCCCAAGCCGCACAGGAGGGCCGCAATACAAATCA
CCACACAAATGCAACATTGAAATGCTTGCACTTGCAAAACAAACAGGAAA
TTCCCCCGTTCTTCTCTCCTGCCCGCCTGGCCCCGAAAATGGATGTTCGG
TACGCGCGATAGGTTGCAGAGGAGCCTGTTTGCAGAGACAGTCGTCCTCC
CGCCACGCCCCACCCAGTCACACAGATTTCTCTATCGAGAAGACCTGGGC
GCCTTTTCTCTCAACATACCCCGGAGCGGTCCCGACACACGTACCTACTT
TAATTCGCACCGATCCTCTCGCCTTGCACCCCCGAAATCGACTTCATCCT
CCCGCGTTCAAACGCTACTTTTCTCCAGGATTTCTACTTCTTGCCCTTCT
TGGAGCCCTTGAGCGATTTCAAGAACTCAGGGTCCACGGCGTTGTCAGCT
GGCAAGGTCCTTGCAGAAGGGGCGTCCCCGGCCACAGAGGAGTaggcggg
agaggcggcaGGAGCCGGTTTGGGATCGGCCGCTTTGGGCTTCGGAGTCT
CCACAGGCTTGggggcctccgccttgggTTCCGGGACAGGGGCAGGCGCA
GGCGTGGGGGCAGGAGCGGGCTTGGGCGCCTCGGCGACAGGGGCAggcgc
gggcgtgggggcaggagcaggcTTGGGCGCCTCGGcgacaggggcaggcg
gTGCTTCTGGAGCCGAAGGGGCAGGCTTGGAGACCTCTGGCGCTggtgag
ggcggggcaggctTCGGAACTTCCGCCTTGATAGGCTCAGGtgccggggc
cgggggggaaggtttGGGTGCCTCCACCTTGGGAGCCGGGGCAGCATCCT
TTGGGGGGACAGGGGGTGTCTttttcagctccttgacGATCGGGACCGGT
TCCTCAGGCTTGGGCAGGAGCACGAAGGCGCCCAGGGCGCCCGTCGAGGC
CAAGATCAGACCGCCCGCTAAGGCCAGACGCACCGCGTCCGACGGGCCGG
GTGCCAAGGGTTTGCGGGCGCGCTGTTGTCGAAGGAACTCCGCTCGCGCT
GCTTCTTCGAtggctttctttttctccgcaGCCGCGATCGCCCTCGCCTT
ACC

Coding sequence (CDS) from alignment at KK037248.1:305873..308625+

>rna8296 ID=rna8296|Name=rna8296|organism=Nannochloropsis gaditana|type=CDS|length=3501bp|location=Sequence derived from alignment at KK037248.1:305873..308625+ (Nannochloropsis gaditana)
ATGACCCCAGCCTTAcggcgacctcctcccactctctcCGTcatcgtcct
tctccttcataTGGGCCTCATCTCTATGGTGAAAGCCAGAGGGAGCTGGT
CACGTTCATTGACTGCCCGAGTTGAAGTCAAGGAAGCTTTTCGGGATCAG
AATGCCGCATTCGTCGATTGCCACTCCAGAGTCAGACTTTCGAGGCCTAC
GCGACAGCCAGGTGCATCGTCATATTACTTTACCTCCGTCACGTCCAAGT
CCATGTACCCCTCGACCGTTCCGCCTTGCAGCATATGTCTCAATACCGTC
GTATCAACCTCTCGAGCATCTGACATATGCTTTGATGGGAGACTGACAGC
AGAGCAGCTCTTCCCGACGTCCTTTGAGCTCGATATGCCGCCCATGGGCC
ACGTACTGGCCTTGCGTCTGCCTGTATCCTCCGTATCACAAGACCCCGAT
CGCGAGTGGGACCTTTCCATTCTCCTAGATAGTTCGACGATGGACACGGT
ATCCCGATCTGCAGCGAAGTTTCCGACCCTACTGCATCCAAAAGAGCTCG
ATCTTGCCATGAACATGAGCAACCTGGATTCGCGCCTTGCATTTCTGGGA
GGGCGTCTGGCACTGCGGCGGAGTTTGCGCAAACTTCCACAGCCCATCAG
GATAGAACAGGCTGTGCTTcgggacgagaaaggggcgCCGGCATTGCCCT
CCCACGTGCAAGCGTCAATAAGCCACAAACAAGATCTGGCAATTTGTCTG
CTGCGTTcggtcgaggaggacccGAATCGTGCATTGTCCAACATTGGCGT
GGACATAGAGATTTGCCAGCCTCGACCCAGCACAAATAGCATTGCAACAC
GTGTGCTCACTAGAAGGGAGCAGGATGAGTTGGGCGGTCTGGCTTCACTG
GGGATCAGTGGAGAGAGCGAGCTCTTGCTTCGGTTTTCTCTGAAAGAGAG
CGTCTACAAGGCCATTTACCCGTTCCTGCGCCGGTACGTAGCTTTTCAAG
AGGCGGAAGTGACCCCACACGTGGACGGCACGTCTACGATCGTCCTGTtc
ctgaagggaggggccgcggagggcttgttcgaggcggaggggcatTGGCG
GCAAGTGGATAATGGCAGGTTCTTCTTGACAGCGGTGTGGGTCAGAAAAG
TTGAAATAAGGTCGTGAATGACCCCAGCCTTAcggcgacctcctcccact
ctctcCGTcatcgtccttctccttcataTGGGCCTCATCTCTATGGTGAA
AGCCAGAGGGAGCTGGTCACGTTCATTGACTGCCCGAGTTGAAGTCAAGG
AAGCTTTTCGGGATCAGAATGCCGCATTCGTCGATTGCCACTCCAGAGTC
AGACTTTCGAGGCCTACGCGACAGCCAGGTGCATCGTCATATTACTTTAC
CTCCGTCACGTCCAAGTCCATGTACCCCTCGACCGTTCCGCCTTGCAGCA
TATGTCTCAATACCGTCGTATCAACCTCTCGAGCATCTGACATATGCTTT
GATGGGAGACTGACAGCAGAGCAGCTCTTCCCGACGTCCTTTGAGCTCGA
TATGCCGCCCATGGGCCACGTACTGGCCTTGCGTCTGCCTGTATCCTCCG
TATCACAAGACCCCGATCGCGAGTGGGACCTTTCCATTCTCCTAGATAGT
TCGACGATGGACACGGTATCCCGATCTGCAGCGAAGTTTCCGACCCTACT
GCATCCAAAAGAGCTCGATCTTGCCATGAACATGAGCAACCTGGATTCGC
GCCTTGCATTTCTGGGAGGGCGTCTGGCACTGCGGCGGAGTTTGCGCAAA
CTTCCACAGCCCATCAGGATAGAACAGGCTGTGCTTcgggacgagaaagg
ggcgCCGGCATTGCCCTCCCACGTGCAAGCGTCAATAAGCCACAAACAAG
ATCTGGCAATTTGTCTGCTGCGTTcggtcgaggaggacccGAATCGTGCA
TTGTCCAACATTGGCGTGGACATAGAGATTTGCCAGCCTCGACCCAGCAC
AAATAGCATTGCAACACGTGTGCTCACTAGAAGGGAGCAGGATGAGTTGG
GCGGTCTGGCTTCACTGGGGATCAGTGGAGAGAGCGAGCTCTTGCTTCGG
TTTTCTCTGAAAGAGAGCGTCTACAAGGCCATTTACCCGTTCCTGCGCCG
GTACGTAGCTTTTCAAGAGGCGGAAGTGACCCCACACGTGGACGGCACGT
CTACGATCGTCCTGTtcctgaagggaggggccgcggagggcttgttcgag
gcggaggggcatTGGCGGCAAGTGGATAATGGCAGGTTCTTCTTGACAGC
GGTGTGGGTCAGAAAAGTTGAAATAAGGTCGTGAATGACCCCAGCCTTAc
ggcgacctcctcccactctctcCGTcatcgtccttctccttcataTGGGC
CTCATCTCTATGGTGAAAGCCAGAGGGAGCTGGTCACGTTCATTGACTGC
CCGAGTTGAAGTCAAGGAAGCTTTTCGGGATCAGAATGCCGCATTCGTCG
ATTGCCACTCCAGAGTCAGACTTTCGAGGCCTACGCGACAGCCAGGTGCA
TCGTCATATTACTTTACCTCCGTCACGTCCAAGTCCATGTACCCCTCGAC
CGTTCCGCCTTGCAGCATATGTCTCAATACCGTCGTATCAACCTCTCGAG
CATCTGACATATGCTTTGATGGGAGACTGACAGCAGAGCAGCTCTTCCCG
ACGTCCTTTGAGCTCGATATGCCGCCCATGGGCCACGTACTGGCCTTGCG
TCTGCCTGTATCCTCCGTATCACAAGACCCCGATCGCGAGTGGGACCTTT
CCATTCTCCTAGATAGTTCGACGATGGACACGGTATCCCGATCTGCAGCG
AAGTTTCCGACCCTACTGCATCCAAAAGAGCTCGATCTTGCCATGAACAT
GAGCAACCTGGATTCGCGCCTTGCATTTCTGGGAGGGCGTCTGGCACTGC
GGCGGAGTTTGCGCAAACTTCCACAGCCCATCAGGATAGAACAGGCTGTG
CTTcgggacgagaaaggggcgCCGGCATTGCCCTCCCACGTGCAAGCGTC
AATAAGCCACAAACAAGATCTGGCAATTTGTCTGCTGCGTTcggtcgagg
aggacccGAATCGTGCATTGTCCAACATTGGCGTGGACATAGAGATTTGC
CAGCCTCGACCCAGCACAAATAGCATTGCAACACGTGTGCTCACTAGAAG
GGAGCAGGATGAGTTGGGCGGTCTGGCTTCACTGGGGATCAGTGGAGAGA
GCGAGCTCTTGCTTCGGTTTTCTCTGAAAGAGAGCGTCTACAAGGCCATT
TACCCGTTCCTGCGCCGGTACGTAGCTTTTCAAGAGGCGGAAGTGACCCC
ACACGTGGACGGCACGTCTACGATCGTCCTGTtcctgaagggaggggccg
cggagggcttgttcgaggcggaggggcatTGGCGGCAAGTGGATAATGGC
AGGTTCTTCTTGACAGCGGTGTGGGTCAGAAAAGTTGAAATAAGGTCGTG
A

Synonyms

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