EWM22411.1, cds8272 (CDS) Nannochloropsis gaditana

Overview
NameEWM22411.1
Unique Namecds8272
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:305961..306023 +
Alignment locationKK037248.1:306095..306185 +
Alignment locationKK037248.1:306269..307281 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22411.1
Product4-phosphopantetheinyl transferase entd
Orig transcript idgnl|cribi|Naga_100067g13.2699.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:305961..306023 +
KK037248.1supercontigKK037248.1:306095..306185 +
KK037248.1supercontigKK037248.1:306269..307281 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0019748secondary metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005488binding
GO:0000287magnesium ion binding
GO:0008897holo-[acyl-carrier-protein] synthase activity
Vocabulary: INTERPRO
TermDefinition
IPR0082784-PPantetheinyl_Trfase_SF
Homology
BLAST of EWM22411.1 vs. NCBI_GenBank
Match: gi|585102915|gb|EWM22411.1| (4-phosphopantetheinyl transferase entd [Nannochloropsis gaditana])

HSP 1 Score: 790.801 bits (2041), Expect = 0.000e+0
Identity = 388/388 (100.00%), Postives = 388/388 (100.00%), Query Frame = 0
Query:    1 MTPALRRPPPTLSVIVLLLHMGLISMVKARGSWSRSLTARVEVKEAFRDQNAAFVDCHSRVRLSRPTRQPGASSYYFTSVTSKSMYPSTVPPCSICLNTVVSTSRASDICFDGRLTAEQLFPTSFELDMPPMGHVLALRLPVSSVSQDPDREWDLSILLDSSTMDTVSRSAAKFPTLLHPKELDLAMNMSNLDSRLAFLGGRLALRRSLRKLPQPIRIEQAVLRDEKGAPALPSHVQASISHKQDLAICLLRSVEEDPNRALSNIGVDIEICQPRPSTNSIATRVLTRREQDELGGLASLGISGESELLLRFSLKESVYKAIYPFLRRYVAFQEAEVTPHVDGTSTIVLFLKGGAAEGLFEAEGHWRQVDNGRFFLTAVWVRKVEIRS 388
            MTPALRRPPPTLSVIVLLLHMGLISMVKARGSWSRSLTARVEVKEAFRDQNAAFVDCHSRVRLSRPTRQPGASSYYFTSVTSKSMYPSTVPPCSICLNTVVSTSRASDICFDGRLTAEQLFPTSFELDMPPMGHVLALRLPVSSVSQDPDREWDLSILLDSSTMDTVSRSAAKFPTLLHPKELDLAMNMSNLDSRLAFLGGRLALRRSLRKLPQPIRIEQAVLRDEKGAPALPSHVQASISHKQDLAICLLRSVEEDPNRALSNIGVDIEICQPRPSTNSIATRVLTRREQDELGGLASLGISGESELLLRFSLKESVYKAIYPFLRRYVAFQEAEVTPHVDGTSTIVLFLKGGAAEGLFEAEGHWRQVDNGRFFLTAVWVRKVEIRS
Sbjct:    1 MTPALRRPPPTLSVIVLLLHMGLISMVKARGSWSRSLTARVEVKEAFRDQNAAFVDCHSRVRLSRPTRQPGASSYYFTSVTSKSMYPSTVPPCSICLNTVVSTSRASDICFDGRLTAEQLFPTSFELDMPPMGHVLALRLPVSSVSQDPDREWDLSILLDSSTMDTVSRSAAKFPTLLHPKELDLAMNMSNLDSRLAFLGGRLALRRSLRKLPQPIRIEQAVLRDEKGAPALPSHVQASISHKQDLAICLLRSVEEDPNRALSNIGVDIEICQPRPSTNSIATRVLTRREQDELGGLASLGISGESELLLRFSLKESVYKAIYPFLRRYVAFQEAEVTPHVDGTSTIVLFLKGGAAEGLFEAEGHWRQVDNGRFFLTAVWVRKVEIRS 388          
BLAST of EWM22411.1 vs. NCBI_GenBank
Match: gi|1072224633|gb|OEU09382.1| (hypothetical protein FRACYDRAFT_271324 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 134.42 bits (337), Expect = 5.353e-34
Identity = 76/191 (39.79%), Postives = 117/191 (61.26%), Query Frame = 0
Query:  193 DSRLAFLGGRLALRRSLRKLPQPIRIEQAVLRDEKGAPALPSHVQASISHKQDLAICLLRSVE-----EDPNRALSNIGVDIEICQPRPSTNSIATRVLTRREQDELGGLASLGISGESELLLRFSLKESVYKAIYPFLRRYVAFQEAEVTPHVDGTSTIVLFLKGGAAEGLFEAEGHWRQVDNGRFFLTA 378
            +S+ +F  GRLA+R +L     PI      L+D+ G P +   V  SISHK++  + L+   E      D N  L+ +G+D+E+   RP  ++++ RVLT  E+  LG +   GI+ + E+LLRFSLKE++YKA +P L +YV FQEAEVTP  DGT++ +  L   A + + +   HW++V +G+FFLT+
Sbjct:    6 NSKNSFWLGRLAIRIALNFPDYPI------LKDQYGRPLMIQGVYGSISHKEERGVALISLPEPVIDASDSNVRLAGVGIDLEMTS-RPGRSNVSKRVLTINERQSLGNIP--GITIDEEVLLRFSLKEAIYKAAHPLLCQYVGFQEAEVTPFADGTASCIWLLDTKADKRIVKLTAHWKKVVDGQFFLTS 187          
BLAST of EWM22411.1 vs. NCBI_GenBank
Match: gi|1210520791|dbj|GAX20354.1| (hypothetical protein FisN_9Hh064 [Fistulifera solaris])

HSP 1 Score: 126.331 bits (316), Expect = 3.255e-30
Identity = 77/213 (36.15%), Postives = 122/213 (57.28%), Query Frame = 0
Query:  174 FPTLLHPKELDLAMNMSNLDSRLAFLGGRLALRRSLRKLPQPIRIEQAVLRDEKGAPALPSHVQASISHKQDLAICLLRSVEEDPNRALSNIGVDIEICQPRPSTNSIATRVLTRREQDELGGLASLGISGESELLLRFSLKESVYKAIYPFLRRYVAFQEAEVTPHVDGTSTIVLFLKGGAAEGLFEAEGHWRQVDNGRFFLTAVWVRKVEI 386
             PT+LHP EL+    + +  +R +F  GRLALR       Q +  ++ +L+D  G P LP+   ASISHK  + + LL++        + +IGVD+E     P+   +A +VLT  EQ+ LG + +  ++ E E+LLRFS+KES+YKA++P+L  YV FQ+ EV P  DG   + L      A  L + + +W+++  G +FL++  V  V +
Sbjct:   71 IPTVLHPLELEYGRQLPSFKTRNSFFLGRLALR-------QVLDTKEPILKDAYGRPRLPAGYVASISHKGPVGVALLQA------SMMGSIGVDLEYSHGNPN---VARKVLTPHEQESLGQIPT--VTPEEEVLLRFSMKESLYKAMHPYLCHYVGFQQVEVQPTADGRGHVQLLFPN--ATRLSDVQIYWQRM--GPYFLSSCRVLPVSV 261          
BLAST of EWM22411.1 vs. NCBI_GenBank
Match: gi|397575909|gb|EJK49959.1| (hypothetical protein THAOC_31114 [Thalassiosira oceanica])

HSP 1 Score: 119.013 bits (297), Expect = 4.666e-26
Identity = 92/261 (35.25%), Postives = 125/261 (47.89%), Query Frame = 0
Query:  155 LSILLDSSTMDTVSRSAAKFPTLLHPKELDLAM-NMSNLDSRLAFLGGRLALRRSLRKL--------PQPIRIEQAVL-----RDEKGAPALPSHVQASISHKQDLAI--------------------CLLRSVEE---------DPNRALSNIGVDIE-ICQPRPSTNSIATRVLTRREQDELGGLASLGISGESELLLRFSLKESVYKAIYPFLRRYVAFQEAEVTPHVDGTSTIVLFLKGGAAEGLFEAEGHWRQVDN 371
            L + L  ST+ +++        LLHP E      N  + +SR ++  GR ALR SL  L        P+  R+  AV      +D  G P LP  V  SISHK D A+                    C +   E+         + NR    IG+D+E I   R S   I  +VLT  E   LGGL S+GIS   E++LRFSLKES YKA++P +  YV+F+EAE+TP  DG + + L LK G ++    A   WR  D+
Sbjct:  112 LCVGLCKSTLGSLTSPHDDGMQLLHPDEYMWGQANFKSSNSRNSYYMGRAALRSSLESLIVDQLGCEPELQRLRSAVRSEPFNKDSFGRPILPVGVMGSISHKNDYAVGLSSMRPNVNVSDEVSWLADCPVLDTEDESSTADIAGNSNRQTRGIGIDLERINDDRGS--RIQHKVLTEWELSHLGGLESIGISKAQEVMLRFSLKESAYKAMHPIICEYVSFKEAEITPFTDGMAKVELSLKSGLSQIAISAS--WRVADS 368          
BLAST of EWM22411.1 vs. NCBI_GenBank
Match: gi|298708529|emb|CBJ49162.1| (4'-phosphopantetheinyl transferase [Ectocarpus siliculosus])

HSP 1 Score: 114.39 bits (285), Expect = 4.627e-25
Identity = 79/209 (37.80%), Postives = 111/209 (53.11%), Query Frame = 0
Query:  178 LHPKELDLAMNMSNLDSRLAFLGGRLALRRSLRKLPQ--PIRIEQAVLRDEKGAPALPSHVQASISHKQDLAICLLRSVEEDPNRALSNIGVDIEICQPRPSTNSIATRVL---TRREQDELGGLASLGISGESELLLRFSLKESVYKAIYPFLRRYVAFQEAEVTPHVDGTSTIVLFLKGGAAEGLFEAEGHWRQVDNGRFFLTAVWV 381
            L PKE+   + +     +L FLGGRLA+RR+L  +         QA+L ++ GAP LP  V ASISHKQ LA+ L++S  E       ++G+DIE+    P+            T RE D LGG+   G+S + E+LLRFS+KE+VYKA +PFL R + F++ EV P           ++GG  E      G W     G   L+A W+
Sbjct:  129 LLPKEMAYCLGLPR-ALQLGFLGGRLAIRRALNGMEDVSAAASSQAILHNQDGAPVLPEGVSASISHKQHLAVALVQSGCE------GHLGIDIEL----PAVQRRLDLRRRVLTPRECDSLGGVD--GMSDQEEVLLRFSMKEAVYKAAHPFLHRPLGFKDVEVQP-----------VRGGGCEVRTTTRGAW-----GGLRLSAGWM 308          
BLAST of EWM22411.1 vs. NCBI_GenBank
Match: gi|1177732077|ref|WP_082821548.1| (hypothetical protein [Gemmatimonas phototrophica])

HSP 1 Score: 92.8189 bits (229), Expect = 4.296e-18
Identity = 67/209 (32.06%), Postives = 104/209 (49.76%), Query Frame = 0
Query:  178 LHPKELDLAMNMSNLDSRLAFLGGRLALRRSLRKLPQ-PIRIEQAVLRDEKGAPALPSHVQASISHKQDLAICLLRSVEEDPNRALSNIGVDIEICQPRPSTN-----SIATRVLTRREQDELGGLASLGISGESELLLRFSLKESVYKAIYPFLRRYVAFQEAEVTPHVDGTSTIVLFLKGGAAEGLFEAEGHWRQVDNGRFFLTAVW 380
            LHP E  LA ++     R  F+ GR+ALR ++ +L   P+     VLR  +GAP LP  +  S++HK  LA+  +   +      L ++G+D+E    RP+       S+A ++LT RE   L       ++    +L+ F+LKE+VYKAI PF+ RYV F E E+         + L L   A   +   E HW    +G + + A +
Sbjct:   44 LHPLEASLARSLPAA-RRATFVAGRVALRDAMAQLADVPLTGNTPVLRTHRGAPLLPPQITGSVTHKSTLAMAAVAPRQG----TLQHVGLDLE---HRPTEADLQRPSVARKILTAREFATLEQFEDASLAQREHVLVHFALKEAVYKAIDPFVERYVRFTEVELNLSDASDVQVTLHLPEPAVSAV-RVEAHWHT--DGDWIVAAAY 241          
BLAST of EWM22411.1 vs. NCBI_GenBank
Match: gi|1127364165|gb|APR85568.1| (4'-phosphopantetheinyl transferase entD [Minicystis rosea])

HSP 1 Score: 87.8113 bits (216), Expect = 1.778e-16
Identity = 68/198 (34.34%), Postives = 102/198 (51.52%), Query Frame = 0
Query:  178 LHPKELDLAMNMSNLDSRLAFLGGRLALRRSLRKLPQPIRIEQAVLRDEKGAPALPSHVQASISHKQDLAICLLRSVEEDPNRALSNIGVDIEICQPRPSTNSIATRVLTRREQDELGGLASLGISGES--ELLLRFSLKESVYKAIYPFLRRYVAFQEAEVTPH--VDGTSTIVLFLKGGAAEGLFEAEGHWRQVDN 371
            L P+E   A  +S L  R  ++ GRLAL  +L  +  P     ++L   +GAP+LP     S+SHK+ +A+ L      D     + +GVD+E  +     + I+ ++LT  E      +   G S +   E+L+RFS+KES+YKA+ PF++RYV F+EAEV P    DG       L     EG F  EG W ++  
Sbjct:   32 LLPEEQAFAATLSPL-RRGTWVAGRLALASALTSIGAP---RTSMLSTPRGAPSLPRGFAGSVSHKRRMAVAL---AALDTG---AGLGVDLE--ELVAGAHDISRKILTTAEL----AIVDAGSSQDRFREVLVRFSIKESIYKAVDPFVQRYVGFKEAEVDPGPWSDGIQMARAQLSLEQGEGPFAVEGAWVEIGG 213          
BLAST of EWM22411.1 vs. NCBI_GenBank
Match: gi|502593395|ref|WP_012830966.1| (4'-phosphopantetheinyl transferase [Haliangium ochraceum] >gi|262082405|gb|ACY18374.1| 4'-phosphopantetheinyl transferase [Haliangium ochraceum DSM 14365])

HSP 1 Score: 87.4261 bits (215), Expect = 3.610e-16
Identity = 66/172 (38.37%), Postives = 91/172 (52.91%), Query Frame = 0
Query:  198 FLGGRLALRRSLRKL---PQPIRIEQAVLRDEKGAPALPSHVQASISHKQDLAICLLRSVEEDPNRALSNIGVDIEICQPRPSTNSIATRVLTRREQDELGGLASLGISGESELLLRFSLKESVYKAIYPFLRRYVAFQEAEVTPHVDGTSTIVLFLKGGAAEGLFEAEGHW 366
            ++ GRLALR +L++L   P P+      L   +GAP LP     SISHK DLA+ L  +  ++  R    +GVDIE  +       I+ RVLT  E D L  L   G+  +  +++ FSLKES+YK+I P+L RYV F E  V    DG + +   L  G A    E +G W
Sbjct:   62 WVAGRLALRAALQRLGASPGPL------LVSARGAPTLPEGFVGSISHKADLAVAL--AARDEGWR----VGVDIE--RSTMGEQDISRRVLTPGEIDALSELPD-GLRNQY-VMVSFSLKESIYKSIDPYLNRYVGFHEMAVALREDGGAEVTSLLSSGEA---LEVQGWW 214          
BLAST of EWM22411.1 vs. NCBI_GenBank
Match: gi|501980547|ref|WP_012682646.1| (hypothetical protein [Gemmatimonas aurantiaca] >gi|226089754|dbj|BAH38199.1| hypothetical protein GAU_1157 [Gemmatimonas aurantiaca T-27])

HSP 1 Score: 84.3445 bits (207), Expect = 1.164e-14
Identity = 66/188 (35.11%), Postives = 95/188 (50.53%), Query Frame = 0
Query:  178 LHPKELDLAMNMSNLDSRLAFLGGRLALRRSLRK-LPQPIRI------------------EQAVLRDEKGAPALPSHVQASISHKQDLAICLL----RSVEEDPNRALSNIGVDIEICQPRPSTN-----SIATRVLTRREQDELGGLASLGISGESELLLRFSLKESVYKAIYPFLRRYVAFQEAEV 337
            LH  E +LA+ M     R  F+ GR+ALR ++R  +P                         A LR  +G P LPS V  S+SHK+ LA+  +    R V E     L ++GVD+E    RP+T+     SIA R+LT +E   +   A+  +     LL+ F++KE++YKAI PF+ RYV F E E+
Sbjct:   56 LHGDEAELALAMPE-GRRGTFVAGRMALRHAMRDAIPMATETATAKGAETSGLLSDASLRHMAFLRTARGGPQLPSAVTGSVSHKRTLALAAIAPRHRRVPE--GGLLQHVGVDLER---RPTTDDLRRPSIARRILTPQEIVWVQARATDPLHEREALLIHFAVKEAIYKAIDPFVHRYVRFTEVEL 237          
BLAST of EWM22411.1 vs. NCBI_GenBank
Match: gi|914795615|ref|WP_050726262.1| (hypothetical protein [Vulgatibacter incomptus] >gi|913609487|gb|AKU92035.1| 4'-phosphopantetheinyl transferase entD [Vulgatibacter incomptus])

HSP 1 Score: 77.7962 bits (190), Expect = 5.836e-13
Identity = 57/160 (35.62%), Postives = 85/160 (53.12%), Query Frame = 0
Query:  178 LHPKELDLAMNMSNLDSRLAFLGGRLALRRSLRKLPQPIRIEQAVLRDEKGAPALPSHVQASISHKQDLAICLLRSVEEDPNRALSNIGVDIEICQPRPSTNSIATRVLTRREQDELGGLASLGISGESELLLRFSLKESVYKAIYPFLRRYVAFQEAEV 337
            LHP+E  +A  +     R+ ++GGRLALR +   L   +    AVLR  +  P  P    A++SHK+ LA+ L+    E        +GVD+E  +P     SI  R+L   E+  +  L      G   L+ RF++KE++YKA++P + RYV F EAEV
Sbjct:   38 LHPEEAAVAGTLRG-RRRVEWVGGRLALREAAAGLGVEL---GAVLRGPRNEPLPPPAFSATVSHKRTLAVGLVAPASE------GTLGVDLEELEP--ERMSILQRILRPEEERRILELPEARRWGA--LVTRFAIKEAIYKALHPHVNRYVGFAEAEV 183          
The following BLAST results are available for this feature:
BLAST of EWM22411.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102915|gb|EWM22411.1|0.000e+0100.004-phosphopantetheinyl transferase entd [Nannochlor... [more]
gi|1072224633|gb|OEU09382.1|5.353e-3439.79hypothetical protein FRACYDRAFT_271324 [Fragilario... [more]
gi|1210520791|dbj|GAX20354.1|3.255e-3036.15hypothetical protein FisN_9Hh064 [Fistulifera sola... [more]
gi|397575909|gb|EJK49959.1|4.666e-2635.25hypothetical protein THAOC_31114 [Thalassiosira oc... [more]
gi|298708529|emb|CBJ49162.1|4.627e-2537.804'-phosphopantetheinyl transferase [Ectocarpus sil... [more]
gi|1177732077|ref|WP_082821548.1|4.296e-1832.06hypothetical protein [Gemmatimonas phototrophica][more]
gi|1127364165|gb|APR85568.1|1.778e-1634.344'-phosphopantetheinyl transferase entD [Minicysti... [more]
gi|502593395|ref|WP_012830966.1|3.610e-1638.374'-phosphopantetheinyl transferase [Haliangium och... [more]
gi|501980547|ref|WP_012682646.1|1.164e-1435.11hypothetical protein [Gemmatimonas aurantiaca] >gi... [more]
gi|914795615|ref|WP_050726262.1|5.836e-1335.63hypothetical protein [Vulgatibacter incomptus] >gi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8296rna8296Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications