rna8290, rna8290 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8290
Unique Name	rna8290
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1209
Alignment location	KK037248.1:288192..290228 +

Link to JBrowse

Properties


Property Name	Value
Product	replication protein a 70 kda dna-binding subunit
Orig transcript id	gnl\|cribi\|Naga_100067g7.2690.mrna
Orig protein id	gnl\|cribi\|Naga_100067g7.2690
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:288192..290228 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100067g7	gene8030	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8290	rna8290-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22402.1	cds8266	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:288192..290228+
coding sequence from alignment at KK037248.1:288192..290228+

mRNA sequence

>rna8290 ID=rna8290|Name=rna8290|organism=Nannochloropsis gaditana|type=mRNA|length=1209bp
AAACCCGCCGCCCGGCCTAGGCCTGTCACCCACCGTCCTGAACGACCTAT
ACCAACACCCCGGGACGAGGTTCCTTGCATATGACTACCGTACATGGCTC
TTCTTACAGGTTTATTTGGTTTGGACTGGAGATGGTAAGCCTCTTCATAC
ATTTTACGTGCCTGCTCCCACTCCTCATCGGCACGCCCGTGACGAGGGCG
TTCATGCCGCGTCTCAATGGAGCCACTTTCTTGGGGCCGTCAAATGCGCT
GTCACCAGTAAATGTGGCACACAGTAGAAATCGAGGCATTTTTTGCATGA
GGAGCAATGAAATGATAACTGTGGAAGGCGTGTCTGTGGTGCTCCTTGCG
GGCGGAGTGGGAAAGCGGATGAAGGCCGATCGACCAAAGCAATTTATAGA
GCTTCTAGGAAAACCAGTTCTTTTGCATTCCCTTGAAATCTTTAGTACCT
TGCCCGGCGTCAATCGGATCGTCATTGTACTTGACAAGAGCTACCGCCAA
GAATTCTCGTTTCTCCAAGAAGAGGACCCTCGTATCGTCTTTGCCGACCC
TGGGAAAGAACGACAAGATTCGGTCTTTAACGGCTTTAGTCAGACTCTTC
CTGACGCTTCAGTAGTCTGCATCCATGATTCCGCCCGTCCTCTCGTATCC
CAATCCGCTGTTTTGGCATCCCTTCGGGATGGTTCGGTGCACGGTGCAGC
GGTCCTCGGTGTACCAATGAAAGCAACTGTTAAGGAATCTGCAGATGGAG
AATTTGTGTTGAGGACTATGAATCGCTCACGTCTCTGGGAAATTCAGACT
CCCCAGGTGATCAAGCCTGACATCCTGTCTGAAGCCTTTGCGCTGGTAAC
AGAGAAGGGCTTGGAAGTCACGGACGACGTGTCCATGGTCGAACAGGTGG
GCAGGCCTGTGAAGCTAACGATGGGGGAATATACAAACATAAAGCTGACG
ACGCCAGAGGATATTGGTGTCGCTGAGGGGTTCTTGAGAGAGCGAGCTGA
GGGTAAACTGTAGCTCGTCGGATCTACCTTTAAAAGGTATGAACTCGCCG
AGTTGTGCGTGCCGTAGTTTAAGAAAAATACAACAACATGTTCGTAGTTG
GTTGAACAAGGTCGGAAATTGCCTGCACAAACCTTGTGTCTTGAATGCAA
ACAGGAAAAACCTATGGCATATGTGTTACGAGACAGAAAAGGATGTACGC
ATTCATCCG

protein sequence of rna8290

>rna8290-protein ID=rna8290-protein|Name=rna8290|organism=Nannochloropsis gaditana|type=polypeptide|length=678bp
MLISRTYPVISPNPNRLISLSIDRTPSPHSDLPAEHICLNVAVLMAPNQE
ITPHTFERIHAGQTKFSPVVQVMDFKQVQPNHGQPGQVRYRLIVSDGTHY
QQAMLATQLNVLINEGQITEHGLICLEEFICNEVQGRKIVIILRCHVVSP
SLGYRVGDPVEYGKAAGGNGGMQGGQPVYGQQPQQAPALNTMAGASVPYK
PAGSSSAGSSNAGAYPPYNSGGAAGGYRAPSGPVVRAGPPQSIIPINDLN
PYINRWVIKARVTSKTDIKRWSNAKGEGTLFSVDLLDEFDGEIRATFFKE
ACEKFYPLLEQGHVYTFSGGKLKPAQRQYSSIRNNYETTFDTNSEIMEVM
DDHKIQSAVYSFKKIGELEETPPNATIDVIGVVKAFSPLSTITTKKDGRE
VEKRELTLCDDTGTEVRLTVWGERASKQPEQWENHPIVAFKGVKVSDYNG
RSLGTMPGSQVTVSPDLPEALHLHNWWHSAGATAASTSISSGGGGGGGGG
GFADRKVLSQIKEEQLGFGEKPDYMDVKATLTYIKSDPDPWYRSCTSPDC
KRKVTEQLNSYFCEKCQREMPECAYRYILTVSGTDHSGSVYLSCFDEHAN
ILLGRSAEELNSFKASDMQARYDATFQEATFGTHILRLRVKAEQVNDEQR
VKSTIMNIRPVNLVQEIRDLITAIKAYN

mRNA from alignment at KK037248.1:288192..290228+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8290 ID=rna8290|Name=rna8290|organism=Nannochloropsis gaditana|type=mRNA|length=2037bp|location=Sequence derived from alignment at KK037248.1:288192..290228+ (Nannochloropsis gaditana)
ATGTTGATTAGTCGTACGTACCCTGTGATAAGCCCTAATCCTAACAGGTT
GATTTCCTTATCTATCGACCGTACGCCCTCCCCACACAGCGACCTGCCTG
CGGAGCACATTTGCCTGAACGTTGCTGTTCTCATGGCACCCAATCAAGAA
ATCACGCCTCATACATTTGAGCGCATCCATGCCGGTCAAACTAAATTTAG
CCCTGTGGTACAGGTCATGGATTTCAAGCAAGTTCAGCCCAACCATGGCC
AACCTGGTCAAGTTCGGTACCGGTTGATTGTTTCGGACGGTACTCACTAC
CAGCAGGCCATGCTCGCCACGCAGCTAAATGTGCTCATCAACGAGGGCCA
GATTACGGAGCACGGGCTCATCTGCTTGGAAGAGTTTATTTGCAACGAGG
tccaagggaggaaaattgTTATCATTCTTCGGTGTCACGTGGTgagtccc
tcccttggctACCGGGTGGGCGACCCGGTGGAGTACGGTAAAGCCGCCGG
CGGAAATGGTGGAATGCAAGGAGGACAGCCAGTCTACGGACAGCAGCCTC
AACAAGCACCTGCGCTCAACACCATGGCGGGCGCCTCTGTGCCGTACAAG
CCTGCAGGCAGCTCATCCGCTGGGTCAAGCAATGCCGGGGCTTACCCTCC
GTACAACTCTGGGGGTGCCGCGGGAGGCTATCGTGCTCCCTCGGGCCCTG
TGGTTCGCGCGGGCCCGCCACAATCAATCATTCCCATCAACGACCTGAAT
CCGTACATAAATCGGTGGGTGATCAAGGCGCGTGTGACCTCCAAGACGGA
CATCAAACGCTGGAGCAAcgccaagggagaggggacgCTCTTCTCGGTCG
ACCTTCTGGACGAGTTCGATGGAGAGATCCGCGCCACCTTTTTCAAGGAA
GCCTGCGAAAAATTTTACCCTCTCCTCGAGCAGGGGCATGTCTACACGTT
CTCAGGAGGGAAGCTGAAACCGGCCCAGCGCCAGTACTCCTCCATACGGA
ACAACTACGAGACAACCTTCGATACGAACTCGGAGATCATGGAGGTAATG
GACGATCATAAGATCCAGTCGGCTGTCTATTCCTTCAAGAAGATCGgcga
gctggaggagaccCCCCCGAACGCCACCATCGACGTCATCGGCGTCGTCA
aagccttttcccccctgagcaccatcaccaccaagAAGGACGgtcgggag
gtggagaagcggGAGCTGACCCTCTGCGACGACACGGGCACGGAAGTCCG
GCTGACCGtgtggggagagagggcgagcAAGCAGCCCGAGCAGTGGGAGA
ACCACCCGATCGTGGCTTTCAAAGGGGTCAAGGTATCCGACTACAACGGC
CGGTCCTTAGGGACGATGCCAGGCTCCCAAGTCACCGTCAGTCCCGACCT
GCCCGAGGCCCTCCACCTGCACAACTGGTGGCACAGTGCCGGGGCTACcg
cggccagcacctccatctcctccggtgggggagggggtggcggcggaggt
ggcttCGCGGATAGGAAGGTGCTGTCTCagatcaaggaggagcagttGGG
TTTCGGGGAGAAGCCAGATTACATGGACGTCAAAGCCACTCTCACGTACA
TCAAGAGCGACCCCGACCCTTGGTATAGGTCCTGCACGTCCCCCGACTGC
AAACGAAAAGTCACGGAACAACTCAACTCCTACTTCTGCGAGAAATGCCA
GAGGGAAATGCCCGAGTGTGCCTACCGCTACATCCTCACCGTCTCTGGCA
CCGACCATTCGGGTTCGGTCTATTTGTCGTGCTTTGACGAGCATGCCAAC
ATCCTTCTCGGTAGATCGGCCGAAGAACTTAACTCGTTCAAGGCCTCTGA
CATGCAGGCGCGCTACGATGCTACTTTCCAAGAGGCCACTTTCGGGACGC
ATATTCTCCGACTTCGCGTGAAAGCAGAGCAAGTGAATGATGAGCAACGG
GTCAAAAGTACGATTATGAACATTCGGCCAGTGAACCTCGTTCAAGAGAT
CAGAGACCTCATAACTGCTATCAAAGCGTACAATTAG

Coding sequence (CDS) from alignment at KK037248.1:288192..290228+

>rna8290 ID=rna8290|Name=rna8290|organism=Nannochloropsis gaditana|type=CDS|length=2037bp|location=Sequence derived from alignment at KK037248.1:288192..290228+ (Nannochloropsis gaditana)
ATGTTGATTAGTCGTACGTACCCTGTGATAAGCCCTAATCCTAACAGGTT
GATTTCCTTATCTATCGACCGTACGCCCTCCCCACACAGCGACCTGCCTG
CGGAGCACATTTGCCTGAACGTTGCTGTTCTCATGGCACCCAATCAAGAA
ATCACGCCTCATACATTTGAGCGCATCCATGCCGGTCAAACTAAATTTAG
CCCTGTGGTACAGGTCATGGATTTCAAGCAAGTTCAGCCCAACCATGGCC
AACCTGGTCAAGTTCGGTACCGGTTGATTGTTTCGGACGGTACTCACTAC
CAGCAGGCCATGCTCGCCACGCAGCTAAATGTGCTCATCAACGAGGGCCA
GATTACGGAGCACGGGCTCATCTGCTTGGAAGAGTTTATTTGCAACGAGG
tccaagggaggaaaattgTTATCATTCTTCGGTGTCACGTGGTgagtccc
tcccttggctACCGGGTGGGCGACCCGGTGGAGTACGGTAAAGCCGCCGG
CGGAAATGGTGGAATGCAAGGAGGACAGCCAGTCTACGGACAGCAGCCTC
AACAAGCACCTGCGCTCAACACCATGGCGGGCGCCTCTGTGCCGTACAAG
CCTGCAGGCAGCTCATCCGCTGGGTCAAGCAATGCCGGGGCTTACCCTCC
GTACAACTCTGGGGGTGCCGCGGGAGGCTATCGTGCTCCCTCGGGCCCTG
TGGTTCGCGCGGGCCCGCCACAATCAATCATTCCCATCAACGACCTGAAT
CCGTACATAAATCGGTGGGTGATCAAGGCGCGTGTGACCTCCAAGACGGA
CATCAAACGCTGGAGCAAcgccaagggagaggggacgCTCTTCTCGGTCG
ACCTTCTGGACGAGTTCGATGGAGAGATCCGCGCCACCTTTTTCAAGGAA
GCCTGCGAAAAATTTTACCCTCTCCTCGAGCAGGGGCATGTCTACACGTT
CTCAGGAGGGAAGCTGAAACCGGCCCAGCGCCAGTACTCCTCCATACGGA
ACAACTACGAGACAACCTTCGATACGAACTCGGAGATCATGGAGGTAATG
GACGATCATAAGATCCAGTCGGCTGTCTATTCCTTCAAGAAGATCGgcga
gctggaggagaccCCCCCGAACGCCACCATCGACGTCATCGGCGTCGTCA
aagccttttcccccctgagcaccatcaccaccaagAAGGACGgtcgggag
gtggagaagcggGAGCTGACCCTCTGCGACGACACGGGCACGGAAGTCCG
GCTGACCGtgtggggagagagggcgagcAAGCAGCCCGAGCAGTGGGAGA
ACCACCCGATCGTGGCTTTCAAAGGGGTCAAGGTATCCGACTACAACGGC
CGGTCCTTAGGGACGATGCCAGGCTCCCAAGTCACCGTCAGTCCCGACCT
GCCCGAGGCCCTCCACCTGCACAACTGGTGGCACAGTGCCGGGGCTACcg
cggccagcacctccatctcctccggtgggggagggggtggcggcggaggt
ggcttCGCGGATAGGAAGGTGCTGTCTCagatcaaggaggagcagttGGG
TTTCGGGGAGAAGCCAGATTACATGGACGTCAAAGCCACTCTCACGTACA
TCAAGAGCGACCCCGACCCTTGGTATAGGTCCTGCACGTCCCCCGACTGC
AAACGAAAAGTCACGGAACAACTCAACTCCTACTTCTGCGAGAAATGCCA
GAGGGAAATGCCCGAGTGTGCCTACCGCTACATCCTCACCGTCTCTGGCA
CCGACCATTCGGGTTCGGTCTATTTGTCGTGCTTTGACGAGCATGCCAAC
ATCCTTCTCGGTAGATCGGCCGAAGAACTTAACTCGTTCAAGGCCTCTGA
CATGCAGGCGCGCTACGATGCTACTTTCCAAGAGGCCACTTTCGGGACGC
ATATTCTCCGACTTCGCGTGAAAGCAGAGCAAGTGAATGATGAGCAACGG
GTCAAAAGTACGATTATGAACATTCGGCCAGTGAACCTCGTTCAAGAGAT
CAGAGACCTCATAACTGCTATCAAAGCGTACAATTAG

Synonyms

Publications