rna8288, rna8288 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8288
Unique Name	rna8288
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1959
Alignment location	KK037248.1:283908..285737 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100067g5.2676.mrna
Orig protein id	gnl\|cribi\|Naga_100067g5.2676
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:283908..285737 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100067g5	gene8028	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8288	rna8288-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22388.1	cds8264	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:283908..285737-
coding sequence from alignment at KK037248.1:283908..285737-

mRNA sequence

>rna8288 ID=rna8288|Name=rna8288|organism=Nannochloropsis gaditana|type=mRNA|length=1959bp
ATGCAGAGAAGAAGACAAGAGAGAATTATTATGATAATATCCTACATAAG
TGTTCTTGGCGTGGCCTTCATGCCTGGCGCGACGCGGGCTTTCAGGCCTC
CCCTGCTCGGGCCCCCCCTGAGAGCCCCCGAAGCCACTTCACCATCCGTC
TCAATCCTGACGCATCAGTTCCCAGAAAGACGCGCGTGGTCTAAACACGC
CCTCTGCTCTGCCTACCAACCCTTTGACCGTCGATCGCGAACGCGATTGG
GACTCGGCACCTTGGCCTCAGAGCAGCTCATGATACCCCCTCCGGAAAAG
ATCCTCGCTGCGGTCGAAAAGGCAGGAGGGCGTGTAACGGTGCAGGACGT
GGCAGCCTTGGCTGGTGAGGACTTGGCAGTTGCACAGAAAGGTCTCGTTA
AGCTCGCGGCTTTGGTGGAGGGAGACCTGGAGGTAGGCAAAGACGGGGAC
TTGGTTTATAATTTTCCTCGAAATTTTCGTACCGCCCTCCGCACGCGCTC
CTTCACCCAACAAGCAAAAGAGCTCTGGCTCAAGCTTTGGCCAAGCTTGT
TCTATGTAACACGCGTCTCCTTTGGCCTCTGCCTGATCCTCTCTATCGTC
CTGGTGTTCGCCACCATCGCCTTCGCGGGCTCGGCCACCCAGGGCGGAGA
CAGAGAGGATGACCGTCGGAGGGACCGAGGGGGGTTTGGGGGGGGCATGG
GAATGTACTTTGGACCCAGCCCCTTCGATTTTTTCTACTACCGGCCGTAC
GGCTACTACTACGCGACGGGAAGCCAGGGGAGGGGAAGGGAAGGGGAGCC
CGCGGAGATGGGCTTCTTGGAGTCTTGCTTCTCCTACATCTTCGGGGATG
GGGACCCGAACGCAGGTCTCGAGGAAGAAAGGTATCGGGAGATAGCGGGC
GTGATCCGGCGGAACGGTGGCGCGGTGGTGGCGGAGCAGCTGGCCCCGTA
TTTGGACGTGCCCGCCCCTCCCGACCCGACGGCCTACGCGACGGGCGGAG
GCGGGGCCTTGACCGCGGTGGTGGACGAGTCCTTCGTCTTGCCCATCCTG
ACCCGCCTGAACGGGCGCCCGGAAGTTACTTCCGAGGGGGACATCATCTA
CGTGTTCCCGGAGTTCATGACCTCGGCAGTGGAAGAAGGGAGAGAGAGAG
GGAGGGAGGCCCTGGATGCGGGGTGGGCTCGCCAGGTGCGAGTGGACGAG
GAAGTCCGGCAGTACCAGGGCCTGAGCGCCTCCGAAATCAGACAGGCGCT
CCTGGTCAAGCGTGTGCCCGTGCAAGACTGCTTCGACAAAGCCTCCCTGT
TGGAACGCCTCAAGGGCTTTCTACTCTCCGCTCCCTCGACCGCCCAGGCC
CTAGGGGAGGCTCCCTACTTGTCAGAGCAACCCGTGCCCTTCTCCCTCGC
GCCCACCACGAACCGTGTCTTCGCGGGCATTTTGGGTGTGGCTAATCTAG
GCGGGGCGATCGTTCTCGGCGACATATTGAGCAAATACTCCGCCATGTAC
GGGAGTACCGGCCTTCCAGGCCTGCTCGGCCTGAGCCAAGCCCTGTATCC
TGCACTCATTGTATACGCCGTCGGCTTCAACCTGATCCCTTTCCTCCGGT
CCCGGTGGCTCAATTTGAAGAACGCAGAAATTGCGCGAAGGAATGAGGCT
CGGCAAAGCTGGGCAGGTATCCTGGGGAGGGCGGTAGGTCCGCTGTACGA
GAAGATTTTGGCGGCCAGACATTACCGCTCGAATCTCAAAGTGATAAAGA
AAGAGGACGTGTTGTACACCAGTGGAAAGAGCGTGGCGGAGCAGTCAAAT
CGGGAGAAAGGGGTGGAAGGACACTTTTGTGAAGCAATTGACGGACATTG
CGGGGGAGTCAAAGTCGTTAGTCAGATGGGAAAAGTACGATACGATGGAC
AACGGTTAGACGAGCGAAGAGGCAGACAATATTCCCCGGGCAAGCAGAGT
CAAGCTTGA

protein sequence of rna8288

>rna8288-protein ID=rna8288-protein|Name=rna8288|organism=Nannochloropsis gaditana|type=polypeptide|length=300bp
MKHSPSTLLLFLCVATFSGPGSVEVGAFYLTPRVSTGADITSPVIVRAMR
LQNFGTYRKSARVLSWVFPQFLRQIMFRGARHGSSTSRSSRSRSRTSGTN
DAGPAPRTGRLAATALSYQVGPSFLQRMSAVSYNGVEGEGGRPSQQSVQQ
PQPQSAQQNVRPALNGEGGLAGAQENSDVIPILIKYTGGVGYKSLYTGVC
RVLKERFGNIAIRKTILGVTEVRGGKKLGIFEVVIGDRSFTSKPGAVGVY
LPMADLQAAIERVVVRREKENKMLAAAAAAVSAVASDGSDGISYQESIHP

mRNA from alignment at KK037248.1:283908..285737-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8288 ID=rna8288|Name=rna8288|organism=Nannochloropsis gaditana|type=mRNA|length=1830bp|location=Sequence derived from alignment at KK037248.1:283908..285737- (Nannochloropsis gaditana)
CAGAAGACAATGACGCTGTACGCGCAGAGGGAAAGGGTCGGGTTGAAAGC
ACCCTTCAATGTTTTCATATTGTGGGCTCTGGGGTTCATTTTTGTTCGAA
ATACCTGTCGCACGCAAACTTTCCACTTTCTTCGGGCTGACGAGCACCAC
CCCCCTCCCCTGGGTTGCTATCTCACCTTTTCAAAATTCCTTCGTACAAA
TACACTTCAGCGCCCGCTGCCGGCGGTAAGCAGCACCACGCCCTGTACGG
CAATAGCGCGGCAACATCGATCATGAAGCACTCCCCATCCACTTTGTTGC
TCTTCCTTTGTGTCGCCACTTTTTCAGGCCCCGGGAGCGTGGAAGTGGGA
GCCTTCTATCTGGTACGTCCACAATGCGCGCTGGCAAGATGTTAGCCTTT
GCATGTTTTCAATGAGAGGGTAATCATGCGTCTCAAATGGATGTTATACA
CGTCGTATACGCGACCGTGCCCGCATCGTACCAGTTTTTGAAATTGTTCC
TCATTCGTACATGTGTCTTTGCGCAGACCCCCCGAGTCTCGACGGGGGCG
GACATTACATCCCCCGTCATCGTCCGGGCCATGCGGTTGCAAAATTTTGG
GACATATAGAAAGTCTGCCAGGGTCCTGTCATGGGTGTTTCCCCAATTTC
TTCGGCAAATCATGTTTAGAGGAGCCCGTCATGGCAGCAGTACCAGCCGA
AGTAGCAGGAGCAGGAGCCGTACGTCAGGCACCAATGACGCGGGGCCTGC
CCCTCGCACAGGCAGACTGGCGGCTACTGCGCTCTCCTACCAGGTAGGTC
CTTCGTTTTTGCAAAGGATGAGTGCTGTGTCATACAATGGGGTTGAAGGA
GAGGGCGGTCGGCCGTCGCAGCAATCAGTGCAGCAGCCGCAGCCTCAGTC
GGCGCAACAAAATGTTAGACCGGCGCTGAACGGAGAGGGCGGTCTTGCAG
GAGCACAAGAGAACTCGGACGTAATTCCTATTTTGATCAAGTACACCGGT
GGGGTGGGATATAAAAGTCTTTACACGGGTGTGTGTCGAGTCCTGAAGGA
GCGGTTCGGGAACATTGCTATTCGAAAGACCATATTGGGCGTCACCGAAG
TCCGAGGGGGGAAGAAACTAGGAATATTTGAGGTTGTGATAGGGGATCGC
TCTTTTACGTCGAAACCAGGGGCCGTGGGTGTATATCTCCCCATGGCTGA
CCTACAAGCTGCCATTGAGAGGGTTGTTGTCCGGCGAGAGAAGGAGAATA
AGATGCTAGCAGCTGCGGCGGCCGCTGTATCGGCCGTGGCGAGCGATGGC
AGTGACGGGATATCCTACCAAGAGTCTATCCATCCATGACGGTGGTCTGT
GAGGAAAGACTGCCCCATGTTGGTCGGGGTCCTGGGGGGAGATGCAGGGG
GCGCGGAAGGGGAAATCCACGAGCGGAAACTCCTATATAAGGTGTCGAGA
AAAGGTGCACGTGCTGTTTGGGTGGAGGGCATCTCTAACGTGTCGGCGAT
TAGTCTTTTACCCGTCTCTGTGACGTGCTATTCTCCGAAGATTCTCCGCG
TTCCCTATTTGTATGTACAAAACCAAGTATATACTCGTATATACGCATAT
ACATAAATATATGAAACCGCACCCTTCCTCCTCATTGGTCCCTGCTTCAT
CGACGATGCAGCTGTATGGAGGGAGGCGGGATCCAGGCAAGAGCAAGGAA
AGAGTACCACCGTTGTTAGCTTGTGAGGTTCACGACGGAAAAGGCTGGCG
AGTGCAAACTGTACTGTCCCCGAAAGGAAACAATCGGCGATGATTTGTAA
ACAACGACAGCTTATCAAGCTTGACTCTGC

Coding sequence (CDS) from alignment at KK037248.1:283908..285737-

>rna8288 ID=rna8288|Name=rna8288|organism=Nannochloropsis gaditana|type=CDS|length=1806bp|location=Sequence derived from alignment at KK037248.1:283908..285737- (Nannochloropsis gaditana)
ACCCCCCGAGTCTCGACGGGGGCGGACATTACATCCCCCGTCATCGTCCG
GGCCATGCGGTTGCAAAATTTTGGGACATATAGAAAGTCTGCCAGGGTCC
TGTCATGGGTGTTTCCCCAATTTCTTCGGCAAATCATGTTTAGAGGAGCC
CGTCATGGCAGCAGTACCAGCCGAAGTAGCAGGAGCAGGAGCCGTACGTC
AGGCACCAATGACGCGGGGCCTGCCCCTCGCACAGGCAGACTGGCGGCTA
CTGCGCTCTCCTACCAGGTAGGTCCTTCGTTTTTGCAAAGGATGAGTGCT
GTGTCATACAATGGGGTTGAAGGAGAGGGCGGTCGGCCGTCGCAGCAATC
AGTGCAGCAGCCGCAGCCTCAGTCGGCGCAACAAAATGTTAGACCGGCGC
TGAACGGAGAGGGCGGTCTTGCAGGAGCACAAGAGAACTCGGACGTAATT
CCTATTTTGATCAAGTACACCGGTGGGGTGGGATATAAAAGTCTTTACAC
GGGTGTGTGTCGAGTCCTGAAGGAGCGGTTCGGGAACATTGCTATTCGAA
AGACCATATTGGGCGTCACCGAAGTCCGAGGGGGGAAGAAACTAGGAATA
TTTGAGGTTGTGATAGGGGATCGCTCTTTTACGTCGAAACCAGGGGCCGT
GGGTGTATATCTCCCCATGGCTGACCTACAAGCTGCCATTGAGAGGGTTG
TTGTCCGGCGAGAGAAGGAGAATAAGATGCTAGCAGCTGCGGCGGCCGCT
GTATCGGCCGTGGCGAGCGATGGCAGTGACGGGATATCCTACCAAGAGTC
TATCCATCCATGAATGAAGCACTCCCCATCCACTTTGTTGCTCTTCCTTT
GTGTCGCCACTTTTTCAGGCCCCGGGAGCGTGGAAGTGGGAGCCTTCTAT
CTGACCCCCCGAGTCTCGACGGGGGCGGACATTACATCCCCCGTCATCGT
CCGGGCCATGCGGTTGCAAAATTTTGGGACATATAGAAAGTCTGCCAGGG
TCCTGTCATGGGTGTTTCCCCAATTTCTTCGGCAAATCATGTTTAGAGGA
GCCCGTCATGGCAGCAGTACCAGCCGAAGTAGCAGGAGCAGGAGCCGTAC
GTCAGGCACCAATGACGCGGGGCCTGCCCCTCGCACAGGCAGACTGGCGG
CTACTGCGCTCTCCTACCAGGTAGGTCCTTCGTTTTTGCAAAGGATGAGT
GCTGTGTCATACAATGGGGTTGAAGGAGAGGGCGGTCGGCCGTCGCAGCA
ATCAGTGCAGCAGCCGCAGCCTCAGTCGGCGCAACAAAATGTTAGACCGG
CGCTGAACGGAGAGGGCGGTCTTGCAGGAGCACAAGAGAACTCGGACGTA
ATTCCTATTTTGATCAAGTACACCGGTGGGGTGGGATATAAAAGTCTTTA
CACGGGTGTGTGTCGAGTCCTGAAGGAGCGGTTCGGGAACATTGCTATTC
GAAAGACCATATTGGGCGTCACCGAAGTCCGAGGGGGGAAGAAACTAGGA
ATATTTGAGGTTGTGATAGGGGATCGCTCTTTTACGTCGAAACCAGGGGC
CGTGGGTGTATATCTCCCCATGGCTGACCTACAAGCTGCCATTGAGAGGG
TTGTTGTCCGGCGAGAGAAGGAGAATAAGATGCTAGCAGCTGCGGCGGCC
GCTGTATCGGCCGTGGCGAGCGATGGCAGTGACGGGATATCCTACCAAGA
GTCTATCCATCCATGAATGAAGCACTCCCCATCCACTTTGTTGCTCTTCC
TTTGTGTCGCCACTTTTTCAGGCCCCGGGAGCGTGGAAGTGGGAGCCTTC
TATCTG

Synonyms

Publications