rna8282, rna8282 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8282
Unique Name	rna8282
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2495
Alignment location	KK037248.1:271349..272967 +

Link to JBrowse

Properties


Property Name	Value
Product	geranylgeranyl transferase type-2 subunit alpha
Orig transcript id	gnl\|cribi\|Naga_100011g94.3438.mrna
Orig protein id	gnl\|cribi\|Naga_100011g94.3438
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:271349..272967 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100011g94	gene8022	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8282	rna8282-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22438.1	cds8258	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:271349..272967+
coding sequence from alignment at KK037248.1:271349..272967+

mRNA sequence

>rna8282 ID=rna8282|Name=rna8282|organism=Nannochloropsis gaditana|type=mRNA|length=2495bp
CTCTTCCTTGGTCTTTGTGTAATTGTTTTCCCCGTATGTCCCGCCGTAGC
GCCTTTTCCCGCCTCGATTATATACTCCTACGACATCTCAGAATCCTTCA
GCCCCCAAGTTGTGAGGCGCGCCGTTTATCATCCTGCCTGCTTGATATAC
AGCCTATCTCCTTTCCATTTTCTACGCCCTCAAGCCCCTTCTTATCACCA
CTCCTTCTCTCGAACAGGGGCTGTAGCTTCTGTCGTCTTCTCGAAAAGGA
GTGTTTTGTCGCTTTGCCACGGCTGCCTCGCATCCGCTACTCGACGCCGG
AAGAAGCATCTTTCCCCTGTCTCCACGCGTCCTCCCGCTCATCCAAGCAA
TTGCGACCGCAACGTCCTCAAACGGCTAAATTTAGCATTTGAAAACATAA
ATGATTGACAGCATGCGGCCGAAGGCAGTTTTGGTGGACGTGAACAGCCT
GTTCGCCTGTATAGACACCAAATTAGAGGGTTCCACTACCGGGAACCTCG
CGATGAGCAAGAACAGGAGGGCAATCGTACCACGCTTTGGAGCAGAGCAG
GTTCTGAACTATCTCAGGGAACAACAGAGTAAGATGGAAAAGGGCGGTAG
CCAGGCTGCGAGCTTGTCTATCACGGTAGTAGCTTCTGGGGAAGCGGCTG
TAGAGCTGGTGCGAGGAGTGGAATCAGACCTCAGTCTCAAGTGTCTGCTG
CAAGGAGTAAGCGTCCTCGCGTGCAAGCATGTCTTGGCAGCTGGAGATGG
CCCCCAGGGCCAGGCATTGCTACACGCATTCCTGCAAGAGCAGAGGGACG
AGACCGTCGGCGTGCCTTCTCCTTGGGCAGCAGCGCGGGCCTCGAGGAGG
GAGAGCGTCGATGGGTGCGACACGGCCAGCCCCTGCAGCGACAGCGTCTA
TGGCAATGAGCAGGGACAGGCTGTTGTCTTGGTCATAGAAAGCAGTCCTT
GCGCCCCCTCGCCATGCGCGTCGTCCCCCCTGTCCATGCCCGCCGTCTGT
GTGGCAGTGTACTCGGCCGCTGGCGTTGAGCGCGGCAATCCCGTGGACTC
TATCGCCCGCAGCACTGGCAGCCATGCAAGCAACGGGCACGGCCCCGACG
CGATCCCCTGCACGACCTTGCTCCATCAGCAGGCGGGGCTCAGCGACCTC
TCTCAAATCGACTGGCGCCCGCTCGGTCTCCCTCCCCTGGAGGTGGACGT
GCAGAACCCGCCTTTCCTGTGGCCGCGGGACTACGAGCGCGCCTTAGGAC
TCGCACAGCTTGTGGAGGCCCGGTGGTGGGACCTACAGCACGGACAGCTG
AACTTGGTGCTGGGACGGGCCGTGCACGCCGAGAACGTGCTGGAGGTGGT
GGCGGAGGAGATGGGCCGGCGGGGAGAGGACGGAACGGTGCGGGCGGAGG
GTTTGGACTCGCTTTTTGTGACCGTGCGCCACGACTTTGGCATCATCGCG
CGGTTACTGGAGGACGGGTACCGGATCCATCACGCTGGAGGGGGGGGGAC
TCAGGTCGTGCTTCTGCGGCTCTTTGTCAAGGTGGAGGTCCCGACGGCGG
GCACGCACATTTGTCGCAGCAAAGTCATTCTTTATAGAACACGGAGACGA
GGACGGGCTGGTTTTAACCAAGACTCGAAGGGCTCCGCACCTATGGGGAT
GGATGTGAGCGGCGAGGGGAGTGGGAGGCGTCAGGGAGAGGGGAGGGTCG
CGGCGAGGGGGGAAGGGGACTCGAGGAGCTTGGAGGTCTTCCTCTTCCGC
CGACGGTCGAAAGGAATCTATAAGATGCCGGGCGGGCATGTGGAGCTGAA
AGAACTGGCGGACGAGGCGGCCGTGCGGGAGGTGAGGGAGGAGACGGGTT
TCGCCTGCCGCGTGGTGGGGATGGTGGCATTGACGGAGCGGAAGGACGTG
GGCAAGAAGTGGGGCTGCTCCCAGCTCATGTTTACGTTCGCGGCGGAATG
GGTCGAGTCGGAGATGCGGCTGGACGACGCAGTAAGTCGGGAGGGGTCTT
GGTTCGCACTGGAGGAGGTGGACGCCATGGTCGCGCAGGACAGTCAGGCC
CTGGACCCGCCTCTCAAAAAAGTGTGGCCAGCGTTCCGGGCGAGAGGCTG
GGCTCCTGCGGCCTGGTTTCGGCACCATCCACAGTGCATTGACCCTGGAT
ATGAGACGCGCAAGCGATGTTACATGCTGAGTGAGGACGCGGGCTCTGAA
GAGGAAGAACTCCAGGGTCGTGTACCGGAGCACGGCAAGGCAGGCAGTGG
GATGACATCCTCTTCCTCTCTCATGTCGGCTTCTTCTTCGACATCGTCCT
TTCTGCCCTACCATCCCCGCGCTCTGCTTAGGGACAGCTGTGTTTCGTCG
CTCAGTTGCGGTGAGGGGGCTAGTGATTGGGAAGGAAGAAGCTCGACGTA
ATGTGGTCGTACCGCGTGTTTGCCAGCTCCGCAGAAACGATCATTTATGC
AGCCATATTATTAATTGAAGCAACTAGTGTACAGTATGCCAAATC

protein sequence of rna8282

>rna8282-protein ID=rna8282-protein|Name=rna8282|organism=Nannochloropsis gaditana|type=polypeptide|length=405bp
MHGRRKDEYQRTHLARSQAEKEAAKNKVFKYKQLMELALQQRQEMRHCKE
ALVTGEALDNDLVLSSQLLRINPDVYTLWNHRKEMIVASGVLRQEAEGGE
TEKEECESEREGGKAPLPPGSFLQTELDLVIDCIRKNPKSYGAWHHRRWL
LDHAFSLSPSAAPPNPSSPVAPLPALSRQLKPVLDQELFLCAKLLDLDER
NFHCWSYRRWVVSKHPARTPRDEFEFSTSRILKNFSNYSAFHHRASYFWD
YLREAHPNLDPPSFLERELDMVQQAVFTEPDDQTAWWYHQHLISLALAWD
TEREKELGERGDQELTPRGVSFAQRVLEKEVKVLRELVEEGEAEGGGYRW
AVLTLADLLGKLARRKEGKSEEASLRAESQKLLKRLPALDPDHAGRYQDM
LDSLP

mRNA from alignment at KK037248.1:271349..272967+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8282 ID=rna8282|Name=rna8282|organism=Nannochloropsis gaditana|type=mRNA|length=1619bp|location=Sequence derived from alignment at KK037248.1:271349..272967+ (Nannochloropsis gaditana)
GCGTGCCATCTAAATTTCTAGCACACGAGTCAGCCAAagctctccctttt
ctcggACGCGTGTGTGTTGACTGTAGCATCACAGCCCTATGCAGTATTTA
TGGAGCGGGTTTCCACATTGCTCGTGCTTGCTCGCCTGGGCTTTTTAACG
ACTTACATCATGCCGTCTCCCTTTCGCCCCCGCCGTACCCCTTTGTCCTA
GTCTGTTTGACATTCTATCATACATTCACAGGCTATCATGCATGGCCGAC
GTAAAGACGAATATCAAAGAACACACCTGGCGCGGAGCCAGGCCGAAAAA
GAAGCTGCGAAAAACAAAGTATTCAAGTACAAACAACTTATGGAGCTGGC
CTTGCAGCAGCGACAGGAAATGAGACATTGTAAGGAGGCGTTGGTAACCG
GAGAGGCCCTGGATAACGACTTGGTATTGTCATCACAGTTGCTCAGAATA
AATCCAGACGTATACACGTTATGGAATCACCGGAAAGAGATGATCGTGGC
ATCTGGGGTCCTTCGGCAAGAggcagagggtggagagacagagaaagaag
agtgtgaaagcgaaagggagggaggcaaagcgCCTCTACCCCCGGGGTCA
TTTTTACAAACGGAACTCGATCTAGTGATCGATTGTATTCGCAAGAATCC
AAAGTCATATGGTGCCTGGCACCATCGCCGCTGGCTCTTGGATCATGCCT
TCTCGCTTAGCCCCTCCGCAGCCCCACCCAATCCTTCCAGTCCTGTGGCT
CCTCTACCCGCCTTGTCGCGCCAACTCAAGCCTGTCCTTGACCAAGAACT
CTTTCTCTGTGCCAAGCTACTCGATCTGGACGAGCGCAACTTCCATTGCT
GGAGTTATCGGCGGTGGGTGGTCAGCAAGCACCCGGCACGGACCCCGCGA
GATGAGTTCGAGTTCTCTACCTCGCGGATTCTGAAAAATTTCAGGTACAT
GCCTTGTGCACCTTTATATGCCAAACGTCTCGCCTCTAGTCAGATATCGT
GAACGCGGATACCGGTTTGGCTGAGCACGTCTGCAGCTTTTCCTCTTGAG
ACATTGCTTCGATGTTCTGTCATCCCTGACCggcctcttctctttttttc
caccCCAGCAATTACTCAGCTTTTCACCACCGTGCATCATATTTTTGGGA
CTACTTGCGTGAAGCACATCCAAATTTagatcccccttccttcctggaga
gggagctggaCATGGTGCAACAAGCCGTGTTCACGGAGCCGGACGACCAG
ACCGCCTGGTGGTACCACCAGCATTTGATCTCCCTGGCATTGGCATGGGA
TACAGAGCGGGAGAAAGAGCTCGGGGAGCGGGGCGACCAGGAATTAACGC
CGCGGGGTGTCTCGTTCGCTCAAAGAGTACTCGAGAAGGAAGTCAAGGTT
TTACGGGAACTggtagaggagggggaggcggagggggggggctatCGATG
GGCGGTGCTTACACTGGCAGATTTGTTGGGAAAGCTGGCgcgcaggaagg
aaggaaagagcgaggaggcatCTTTGCGGGCTGAGAGTCAGAAGTTGCTG
AAGAGGCTCCCCGCCCTTGACCCCGACCACGCGGGTCGCTACCAAGACAT
GCTCGACTCGCTGCCTTGA

Coding sequence (CDS) from alignment at KK037248.1:271349..272967+

>rna8282 ID=rna8282|Name=rna8282|organism=Nannochloropsis gaditana|type=CDS|length=2436bp|location=Sequence derived from alignment at KK037248.1:271349..272967+ (Nannochloropsis gaditana)
ATGCATGGCCGACGTAAAGACGAATATCAAAGAACACACCTGGCGCGGAG
CCAGGCCGAAAAAGAAGCTGCGAAAAACAAAGTATTCAAGTACAAACAAC
TTATGGAGCTGGCCTTGCAGCAGCGACAGGAAATGAGACATTGTAAGGAG
GCGTTGGTAACCGGAGAGGCCCTGGATAACGACTTGGTATTGTCATCACA
GTTGCTCAGAATAAATCCAGACGTATACACGTTATGGAATCACCGGAAAG
AGATGATCGTGGCATCTGGGGTCCTTCGGCAAGAggcagagggtggagag
acagagaaagaagagtgtgaaagcgaaagggagggaggcaaagcgCCTCT
ACCCCCGGGGTCATTTTTACAAACGGAACTCGATCTAGTGATCGATTGTA
TTCGCAAGAATCCAAAGTCATATGGTGCCTGGCACCATCGCCGCTGGCTC
TTGGATCATGCCTTCTCGCTTAGCCCCTCCGCAGCCCCACCCAATCCTTC
CAGTCCTGTGGCTCCTCTACCCGCCTTGTCGCGCCAACTCAAGCCTGTCC
TTGACCAAGAACTCTTTCTCTGTGCCAAGCTACTCGATCTGGACGAGCGC
AACTTCCATTGCTGGAGTTATCGGCGGTGGGTGGTCAGCAAGCACCCGGC
ACGGACCCCGCGAGATGAGTTCGAGTTCTCTACCTCGCGGATTCTGAAAA
ATTTCAGCAATTACTCAGCTTTTCACCACCGTGCATCATATTTTTGGGAC
TACTTGCGTGAAGCACATCCAAATTTagatcccccttccttcctggagag
ggagctggaCATGGTGCAACAAGCCGTGTTCACGGAGCCGGACGACCAGA
CCGCCTGGTGGTACCACCAGCATTTGATCTCCCTGGCATTGGCATGGGAT
ACAGAGCGGGAGAAAGAGCTCGGGGAGCGGGGCGACCAGGAATTAACGCC
GCGGGGTGTCTCGTTCGCTCAAAGAGTACTCGAGAAGGAAGTCAAGGTTT
TACGGGAACTggtagaggagggggaggcggagggggggggctatCGATGG
GCGGTGCTTACACTGGCAGATTTGTTGGGAAAGCTGGCgcgcaggaagga
aggaaagagcgaggaggcatCTTTGCGGGCTGAGAGTCAGAAGTTGCTGA
AGAGGCTCCCCGCCCTTGACCCCGACCACGCGGGTCGCTACCAAGACATG
CTCGACTCGCTGCCTTGAATGCATGGCCGACGTAAAGACGAATATCAAAG
AACACACCTGGCGCGGAGCCAGGCCGAAAAAGAAGCTGCGAAAAACAAAG
TATTCAAGTACAAACAACTTATGGAGCTGGCCTTGCAGCAGCGACAGGAA
ATGAGACATTGTAAGGAGGCGTTGGTAACCGGAGAGGCCCTGGATAACGA
CTTGGTATTGTCATCACAGTTGCTCAGAATAAATCCAGACGTATACACGT
TATGGAATCACCGGAAAGAGATGATCGTGGCATCTGGGGTCCTTCGGCAA
GAggcagagggtggagagacagagaaagaagagtgtgaaagcgaaaggga
gggaggcaaagcgCCTCTACCCCCGGGGTCATTTTTACAAACGGAACTCG
ATCTAGTGATCGATTGTATTCGCAAGAATCCAAAGTCATATGGTGCCTGG
CACCATCGCCGCTGGCTCTTGGATCATGCCTTCTCGCTTAGCCCCTCCGC
AGCCCCACCCAATCCTTCCAGTCCTGTGGCTCCTCTACCCGCCTTGTCGC
GCCAACTCAAGCCTGTCCTTGACCAAGAACTCTTTCTCTGTGCCAAGCTA
CTCGATCTGGACGAGCGCAACTTCCATTGCTGGAGTTATCGGCGGTGGGT
GGTCAGCAAGCACCCGGCACGGACCCCGCGAGATGAGTTCGAGTTCTCTA
CCTCGCGGATTCTGAAAAATTTCAGCAATTACTCAGCTTTTCACCACCGT
GCATCATATTTTTGGGACTACTTGCGTGAAGCACATCCAAATTTagatcc
cccttccttcctggagagggagctggaCATGGTGCAACAAGCCGTGTTCA
CGGAGCCGGACGACCAGACCGCCTGGTGGTACCACCAGCATTTGATCTCC
CTGGCATTGGCATGGGATACAGAGCGGGAGAAAGAGCTCGGGGAGCGGGG
CGACCAGGAATTAACGCCGCGGGGTGTCTCGTTCGCTCAAAGAGTACTCG
AGAAGGAAGTCAAGGTTTTACGGGAACTggtagaggagggggaggcggag
ggggggggctatCGATGGGCGGTGCTTACACTGGCAGATTTGTTGGGAAA
GCTGGCgcgcaggaaggaaggaaagagcgaggaggcatCTTTGCGGGCTG
AGAGTCAGAAGTTGCTGAAGAGGCTCCCCGCCCTTGACCCCGACCACGCG
GGTCGCTACCAAGACATGCTCGACTCGCTGCCTTGA

Synonyms

Publications