rna8281, rna8281 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8281
Unique Name	rna8281
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1978
Alignment location	KK037248.1:268588..271082 +

Link to JBrowse

Properties


Property Name	Value
Product	NUDIX hydrolase domain-like protein
Orig transcript id	gnl\|cribi\|Naga_100011g93.3509.mrna
Orig protein id	gnl\|cribi\|Naga_100011g93.3509
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:268588..271082 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100011g93	gene8021	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8281	rna8281-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22509.1	cds8257	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:268588..271082+
coding sequence from alignment at KK037248.1:268588..271082+

mRNA sequence

>rna8281 ID=rna8281|Name=rna8281|organism=Nannochloropsis gaditana|type=mRNA|length=1978bp
TCCTTTCCTCGAGAAATTTCCACAGCCACGCGACGACATGGGGAAAAAAC
AGCATTCTAAGGACCGCATGTTCCTCACCGCTACGGAATGGAAGGAGCTT
GGCGGGAAGCGGGAGGCTGCGGGGCGCTCGAGCTACCGACCTCTGGCTTT
CGATTCGTGTGCGCTTAGCTTGCAGCCTTACGAGACGCCAGTGTGCACGC
CTGAAGGCGTCTTGTTCGACATTTTGAACCTTTTCCCCTACGTGCAGAAG
CACAAGAAGAATCCCATCACGGGGCACTCCATGACGGCCAAGGAGATCGT
CCGCCTGACCATGGCCAAGAACGCGGAGGGGAAGTGGCACTGCCCCGTCA
CCTTCAAGGAGTTTACGGACCATACGCACGTGGTGGCGGTCAAGCCTTCA
GGGAATGTCTACGCCTACGAGGCGGTGGAAGAACTGAATATCAGGCGGAA
GAATTGGACGGATTTGATGACGGGTGAAAGCTTTACTCGGAAGGATATCA
TCACTTTGCAAGACCCTTCAAACGCGGCGCACATGGCTCTTCGTGATATC
AGCAATTTCAAGCATTTGGAGGAGGTGCGCGCGGAGGAGCAGGCCCGTGT
GGCGGGAGCCTCTGCGGAAGAGAAAATCGCCAGCTCGATCAGGACCAACG
CGAGCACCGAGATGGTCCTCGCAGAGTTCCAGCGGCAACAGAGGGAGCGG
GAAGAGGCGGAAGCATTGCGAGCGGCGCAGGCAGAGGCGGCGGCTGTGGA
AAGGGAGAAGCAGGAGGCGGAGGAGGAGGAAGAGCTCCGGAGGAAGGGGG
GAGGGGGGGCGACCAAGAGACGGCGTTCGATTTTGATCGAAGACCTACAT
CCAGGGAAATCGGTGACGACTGGGAAGGCGGCCGCGTCCTTCACCGCCAC
GGGAGTGGATCTGGCCACCGGGAACACCTGCCGGACCGCTACGGAGGAGG
AGACTAGGGAGGTCCGCTACAAATTTGCGCGAAAGCTGGGAAAGAAAGGG
TATGTGCAGCTCCAGACATCGCTGGGCAACCTGAACCTGGAGATCCATTG
CGATTTCGTCCCACGGACGGCGGAGAATTTCCTGGGCCTGTGCCTGCGTG
GATTCTACGACGGACTGTCCTTCCACCGGGTCATCAAGGGGTTCATGGCG
CAGACGGGATGCCCCCGAGGGGATGGGCGGGGCGGAGAGACGGTATGGAG
CCTCGGGGGGGGGAGGGAGGAGGGGAAGGAGGGAGGGGCGACGATGGGGT
TCAAGGATGAGTTCGACAGCAGGTTGACGCACGACAAGCGCGGGGTCCTC
AGCATGGCGAACTCGGGCAAGGACACGAATCGGAGTCAGTTTTTTATCAC
CTTCAAGTCCTGCCGGCACCTGGACAACAAGCACACGGTTTTTGGGAGGG
TGGTGGGGGGCATGGACGTGCTAGGGAGGTTGGAAGGTGTGGAGGTGGGG
AAAGAGGACAGGCCGAAGGAGGAGGTGAAGGTTTTGAAGGCGGTGGCCTT
GGTGAACCCCTTGGAGGAGAGTGATGCCCAATTTGACGCCTTTGTGGAGG
GGCGGCGTCAGGAAAGAGAGGCGAAGCAGGCCTTCCGGAGAGACAACAAC
GCACTGGGGTTTACGCGAAAGGGAAAAGGAAAGGGAGAGGAGGGCAATGG
AGTACTCTCGGCACGAGAAGCGGCCGATGCAGAGCGAACGGAGGGCTTCT
ACTCGCAGCCCGGTCCGCAGAAGAGCGTCGGCGAGGGCGTGGGGAGGTAC
TTGGGAAGCGGGGCAGGGCAAGGGAGATTGGGCGGGGGGACGGTGCTGCC
GCAGAGGACGGCGGTCGTGGGGAGTGAGGCCGCCTACATGCAGGAGGTGG
TCGGTCCGGCGGTGCACGTCAAGGAGTCGAGCAAGGCCTTTCAAGAGCTG
GCGGCGCAGGAGGAGAGGAAAGGGGGGTCGAAGAAGAGACGGGTGGCTGG
AGCCTTCGGGAACTTCGAGGGCTGGTGA

protein sequence of rna8281

>rna8281-protein ID=rna8281-protein|Name=rna8281|organism=Nannochloropsis gaditana|type=polypeptide|length=666bp
MIDSMRPKAVLVDVNSLFACIDTKLEGSTTGNLAMSKNRRAIVPRFGAEQ
VLNYLREQQSKMEKGGSQAASLSITVVASGEAAVELVRGVESDLSLKCLL
QGVSVLACKHVLAAGDGPQGQALLHAFLQEQRDETVGVPSPWAAARASRR
ESVDGCDTASPCSDSVYGNEQGQAVVLVIESSPCAPSPCASSPLSMPAVC
VAVYSAAGVERGNPVDSIARSTGSHASNGHGPDAIPCTTLLHQQAGLSDL
SQIDWRPLGLPPLEVDVQNPPFLWPRDYERALGLAQLVEARWWDLQHGQL
NLVLGRAVHAENVLEVVAEEMGRRGEDGTVRAEGLDSLFVTVRHDFGIIA
RLLEDGYRIHHAGGGGTQVVLLRLFVKVEVPTAGTHICRSKVILYRTRRR
GRAGFNQDSKGSAPMGMDVSGEGSGRRQGEGRVAARGEGDSRSLEVFLFR
RRSKGIYKMPGGHVELKELADEAAVREVREETGFACRVVGMVALTERKDV
GKKWGCSQLMFTFAAEWVESEMRLDDAVSREGSWFALEEVDAMVAQDSQA
LDPPLKKVWPAFRARGWAPAAWFRHHPQCIDPGYETRKRCYMLSEDAGSE
EEELQGRVPEHGKAGSGMTSSSSLMSASSSTSSFLPYHPRALLRDSCVSS
LSCGEGASDWEGRSST

mRNA from alignment at KK037248.1:268588..271082+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8281 ID=rna8281|Name=rna8281|organism=Nannochloropsis gaditana|type=mRNA|length=2495bp|location=Sequence derived from alignment at KK037248.1:268588..271082+ (Nannochloropsis gaditana)
CTCTTCCTTGGTCTTTGTGTAATTGTTTTCCCCGTATGTCCCGCCGTAgc
gccttttcccgcctcgaTTATATACTCCTACGACATCTCAGAATCCTTCA
GCCCCCAAGTTGTGAGGCGCGCCGTTTATCATCCTGCCTGCTTGATATAC
AGCCTAtctcctttccattttctaCGCCCTCAAGCCCCTTCTTATCACCA
CTCCTTCTCTCGAACAGGGGCTGTAGCTTCTGTCGTCTTCTCGAAAAGGA
GTGTTTTGTCGCTTTGCCACGGCTGCCTCGCATCCGCTACTCGACGCCGG
AAGAAGCATCTTTCCCCTGTCTCCACGCGTCCTCCCGCTCATCCAAGCAA
TTGCGACCGCAACGTCCTCAAACGGCTAAATTTAGCATTTGAAAACATAA
ATGATTGACAGCATGCGGCCGAAGGCAGTTTTGGTGGACGTGAACAGCCT
GTTCGCCTGTATAGACACCAAATTAGAGGGTTCCACTACCGGGAACCTCG
CGATGAGCAAGAACAGGAGGGCAATCGTACCACGCTTTGGAGCAGAGCAG
GTTCTGAACTATCTCAGGGAACAACAGAGTaagatggaaaagggcggtAG
CCAGGCTGCGAGCTTGTCTATCACGGTAGTAGCTTCTGGGGAAGCGGCTG
TAGAGCTGGTGCGAGGAGTGGAATCAGACCTCAGTCTCAAGTGTCTGCTG
CAAGGAGTAAGCGTCCTCGCGTGCAAGCATGTCTTGGCAGCTGGAGATGG
CCCCCAGGGCCAGGCATTGCTACACGCATTCCTGCAAGAGCAGAGGGACG
AGACCGTCGgcgtgccttctccttgggcAGCAGCGCGGgcctcgaggagg
gagagcgtcgATGGGTGCGACACGGCCAGCCCCTGCAGCGACAGCGTCTA
TGGCAATGAGCAGGGACAGGCTGTTGTCTTGGTCATAGAAAGCAGTCCTT
GCGCCCCCTCGCCATGCGCGTCGTCCCCCCTGTCCATGCCCGCCGTCTGT
GTGGCAGTGTACTCGGCCGCTGGCGTTGAGCGCGGCAATCCCGTGGACTC
TATCGCCCGCAGCACTGGCAGCCATGCAAGCAACGGGCACGGCCCCGACG
CGATCCCCTGCACGACCTTGCTCCATCAGCAGGCGGGGCTCAGCGACCTC
TCTCAAATCGACTGGCGCCCGCtcggtctccctcccctggaggtggacgt
gcAGAACCCGCCTTTCCTGTGGCCGCGGGACTACGAGCGCGCCTTAGGAC
TCGCACAGCTTGTGGAGGCCCGGTGGTGGGACCTACAGCACGGACAGCTG
AACTTGGTGCTGGGACGGGCCGTGCACGCCGAGAacgtgctggaggtggt
ggcggaggagatgggccggcggggagaggacggaacggtgcgggcggagg
gTTTGGACTCGCTTTTTGTGACCGTGCGCCACGACTTTGGCATCATCGCG
CGGTTACTGGAGGACGGGTACCGGATCCATCacgctggagggggggggac
tCAGGTCGTGCTTCTGCGGCTCTTTGTCAAGGTGGAGGTCCCGACGGCGG
GCACGCACATTTGTCGCAGCAAAGTCATTCTTTATAGAAcacggagacga
ggacgggctGGTTTTAACCAAGACTCGAAGGGCTCCGCACCTATGGGGAT
GGATGTGAGCGGcgaggggagtgggaggcgtcagggagaggggagggtcg
cggcgaggggggaaggggactcGAGGAGCTTGgaggtcttcctcttccgc
cgacGGTCGAAAGGAATCTATAAGATGCCGGGCGGGCATGTGGAGCTGAA
AGAActggcggacgaggcggccgtgcgggaggtgagggaggagacgggtt
TCGCCTGCCGCgtggtggggatggtggCATTGACGGAGCGGAAGGACGTG
GGCAAGAAGTGGGGCTGCTCCCAGCTCATGTTTACGTTCGCGGCGGAATG
GGTCGAGTCGGAGATGCGGCTGGACGACGCAGTAAGTCGGGAGGGGTCTT
GGTTCGcactggaggaggtggacgccaTGGTCGCGCAGGACAGTCAGGCC
CTGGACCCGCCTCTCAAAAAAGTGTGGCCAGCGTTCCGGGCGAGAGGCTG
GGCTCCTGCGGCCTGGTTTCGGCACCATCCACAGTGCATTGACCCTGGAT
ATGAGACGCGCAAGCGATGTTACATGCTGAGTGAGGACGCGGGCtctgaa
gaggaagaactcCAGGGTCGTGTACCGGAGCACGGCAAGGCAGGCAGTGG
GATgacatcctcttcctctctcatgtcggcttcttcttcgacaTCGTCCT
TTCTGCCCTACCATCCCCGCGCTCTGCTTAGGGACAGCTGTGTTTCGTCG
CTCAGTTGCGGTGAGGGGGCTAGTGattgggaaggaagaagctcGACGTA
ATGTGGTCGTACCGCGTGTTTGCCAGCTCCGCAGAAACGATCATTTATGC
AGCCATATTATTAATTGAAGCAACTAGTGTACAGTATGCCAAATC

Coding sequence (CDS) from alignment at KK037248.1:268588..271082+

>rna8281 ID=rna8281|Name=rna8281|organism=Nannochloropsis gaditana|type=CDS|length=2001bp|location=Sequence derived from alignment at KK037248.1:268588..271082+ (Nannochloropsis gaditana)
ATGATTGACAGCATGCGGCCGAAGGCAGTTTTGGTGGACGTGAACAGCCT
GTTCGCCTGTATAGACACCAAATTAGAGGGTTCCACTACCGGGAACCTCG
CGATGAGCAAGAACAGGAGGGCAATCGTACCACGCTTTGGAGCAGAGCAG
GTTCTGAACTATCTCAGGGAACAACAGAGTaagatggaaaagggcggtAG
CCAGGCTGCGAGCTTGTCTATCACGGTAGTAGCTTCTGGGGAAGCGGCTG
TAGAGCTGGTGCGAGGAGTGGAATCAGACCTCAGTCTCAAGTGTCTGCTG
CAAGGAGTAAGCGTCCTCGCGTGCAAGCATGTCTTGGCAGCTGGAGATGG
CCCCCAGGGCCAGGCATTGCTACACGCATTCCTGCAAGAGCAGAGGGACG
AGACCGTCGgcgtgccttctccttgggcAGCAGCGCGGgcctcgaggagg
gagagcgtcgATGGGTGCGACACGGCCAGCCCCTGCAGCGACAGCGTCTA
TGGCAATGAGCAGGGACAGGCTGTTGTCTTGGTCATAGAAAGCAGTCCTT
GCGCCCCCTCGCCATGCGCGTCGTCCCCCCTGTCCATGCCCGCCGTCTGT
GTGGCAGTGTACTCGGCCGCTGGCGTTGAGCGCGGCAATCCCGTGGACTC
TATCGCCCGCAGCACTGGCAGCCATGCAAGCAACGGGCACGGCCCCGACG
CGATCCCCTGCACGACCTTGCTCCATCAGCAGGCGGGGCTCAGCGACCTC
TCTCAAATCGACTGGCGCCCGCtcggtctccctcccctggaggtggacgt
gcAGAACCCGCCTTTCCTGTGGCCGCGGGACTACGAGCGCGCCTTAGGAC
TCGCACAGCTTGTGGAGGCCCGGTGGTGGGACCTACAGCACGGACAGCTG
AACTTGGTGCTGGGACGGGCCGTGCACGCCGAGAacgtgctggaggtggt
ggcggaggagatgggccggcggggagaggacggaacggtgcgggcggagg
gTTTGGACTCGCTTTTTGTGACCGTGCGCCACGACTTTGGCATCATCGCG
CGGTTACTGGAGGACGGGTACCGGATCCATCacgctggagggggggggac
tCAGGTCGTGCTTCTGCGGCTCTTTGTCAAGGTGGAGGTCCCGACGGCGG
GCACGCACATTTGTCGCAGCAAAGTCATTCTTTATAGAAcacggagacga
ggacgggctGGTTTTAACCAAGACTCGAAGGGCTCCGCACCTATGGGGAT
GGATGTGAGCGGcgaggggagtgggaggcgtcagggagaggggagggtcg
cggcgaggggggaaggggactcGAGGAGCTTGgaggtcttcctcttccgc
cgacGGTCGAAAGGAATCTATAAGATGCCGGGCGGGCATGTGGAGCTGAA
AGAActggcggacgaggcggccgtgcgggaggtgagggaggagacgggtt
TCGCCTGCCGCgtggtggggatggtggCATTGACGGAGCGGAAGGACGTG
GGCAAGAAGTGGGGCTGCTCCCAGCTCATGTTTACGTTCGCGGCGGAATG
GGTCGAGTCGGAGATGCGGCTGGACGACGCAGTAAGTCGGGAGGGGTCTT
GGTTCGcactggaggaggtggacgccaTGGTCGCGCAGGACAGTCAGGCC
CTGGACCCGCCTCTCAAAAAAGTGTGGCCAGCGTTCCGGGCGAGAGGCTG
GGCTCCTGCGGCCTGGTTTCGGCACCATCCACAGTGCATTGACCCTGGAT
ATGAGACGCGCAAGCGATGTTACATGCTGAGTGAGGACGCGGGCtctgaa
gaggaagaactcCAGGGTCGTGTACCGGAGCACGGCAAGGCAGGCAGTGG
GATgacatcctcttcctctctcatgtcggcttcttcttcgacaTCGTCCT
TTCTGCCCTACCATCCCCGCGCTCTGCTTAGGGACAGCTGTGTTTCGTCG
CTCAGTTGCGGTGAGGGGGCTAGTGattgggaaggaagaagctcGACGTA
A

Synonyms

Publications