rna827, rna827 (mRNA) Nannochloropsis gaditana

Overview
Namerna827
Unique Namerna827
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1193
Alignment locationCM002456.1:511610..513174 -

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Properties
Property NameValue
Productshort-chain dehydrogenase reductase sdr
Orig transcript idgnl|cribi|Naga_100017g16.342.mrna
Orig protein idgnl|cribi|Naga_100017g16.342
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:511610..513174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100017g16gene791Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna827rna827-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29844.1cds827Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna827 ID=rna827|Name=rna827|organism=Nannochloropsis gaditana|type=mRNA|length=1193bp
TCGAGTTAGAAAATTCTGTTGCAGAGGAGTGCTGAGAACCGAATCCCCAC
GCTCCCGTGTGAGCGGAGGTATATGAAAGCAAGTGATAAAGGAAACTGAG
GAATCCACTGCTTCGTCCCACAGGCAACAATGGTGGACATGAGGTTCACC
ATGCAGGTGGCACGACGTTTATGCCTAACCGTAAAGGTCGCGTCCCTTCA
GGCTTTTGGGATCGCATTTGAATCAGAATAACCTCCCCCTCACTTCAATT
CGAACAAGTCGACACAGACAACTCCCACACTTTCAGAGCTCTCACCACAA
CCTGTCGTGATTTTTTTTAAAACGCACCCGCGCACGGTCCAGTATGCTGA
TCGCTTTATCATGAATCTACTCCGCGCTAGCAACCTGGATGGAAGGCTTC
ATCAATTCCTCGTCTTCCATGCTTTTTCTCGTGCGAGGCCCCCCCTATCC
TCCCAAGCATTCCCATCCGTCATCTATCATGCTAGACGGTGCTTTGCACA
AATAAATGGCAACCAAGTGCGAGTGGGAAATGTGTTGGAATACAAAGGGA
AGCTTGTCATGGTGAAAAGGGCTCAAGCTGTCAAGCCAGGCAAGGGTGGC
GCGTTCAATCAGGTCGAATTGAGGGACATCAGGACAGGCCTCAAGTACCA
CGAGCGGCTACGAGCGTCGGAGAGTGTTGAAAAAGTCAGGCTAGACGATG
AGGAGCTTTACGATTACCTTTACGAGGAAGGGGATAAACTGGTACTCATG
AACAAGCAAGACTTCACACAGATAGAGGTATCCCGCAATGTGCTCTCGGA
AACGGAGCAAAAATTTTTGCAGGAGGGCCTGACACTTCGCGTCCAGTTTC
ATGAAGGATCTCCCCTTTTGGTACGGCTGCCAAGGACGCTGGTGGTTGAG
GTAGCGAGCACGGAGCCCTTTAGCAAGGGAAGCCAGGCCAGCCCCACGTT
TAAGCCTGCCACGCTGAGCAATGGAGAAGTCTTGAAGGTCCCGCCCTTTG
TGGGGGTCGGTGAGAAGGTGATAATTAATACCGAGGAAATGGAGTACCAA
TCGAGGGTGTGATGGACCCGGGGCCATGCTCCACCGGAGATGCCGGCTGA
CTCGTGAGGATGTGGGAACGTCACAGGTAAGAGATAGTTGGCCAGTGTGC
CTTCGCGCAAATTAAAAAAACAAAGCAACCTGGCCGCAAAACG
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protein sequence of rna827

>rna827-protein ID=rna827-protein|Name=rna827|organism=Nannochloropsis gaditana|type=polypeptide|length=276bp
MTNSGSRKIVLLTGSTGAIGREIAISLAGKGCELILPVRDAERGKQLVKD
ILEKAGAQAGPVHLEACDMSSLSSLRNFVRRVQEAYPRLDVLINNAATVP
PTRQLTEDGLETQFCVNVLSYFLLMFSLSSFLRKSGKARIINVASNLAGD
LDLTDMQFEKRKYNNMLAYKQSKQADRQLSWAGAKFFADSGVKVFAMHPG
VTTSAILKGVGYEKGWDSAEFCAKMAVQLVMEEEGMKTMETGTYWVNGEE
TACPWQENDQECQAVWDYCKKCAGVE
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mRNA from alignment at CM002456.1:511610..513174-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna827 ID=rna827|Name=rna827|organism=Nannochloropsis gaditana|type=mRNA|length=1565bp|location=Sequence derived from alignment at CM002456.1:511610..513174- (Nannochloropsis gaditana)
TGTTACGTACCTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTC
TCCCTCGTCCTCCTCCTCCTCCTCCTCCTCCTCAGCAAGGGCTTGCCCGT
CCTCCATGATCCTGTCCGTGCTACGTCTGTTCAAGTGGCTGGTTTGTCAG
AGTACAACCGGAGGGAAGTGAAGTTGGTGGGAGGACCGCCCGTGTGCTCG
CTGTCGATCCTTTGTTACTTATCGCTTCGGTAGGTATCACCTCCTGCCCC
CGCGTTAATCCTCAACGTCCCGGCTACAAGACTTCCCACGGCTGGCGCAC
TTCCCTCACAGGATGACAAACAGCGGATCACGCAAGATTGTCCTTCTCAC
AGGATCCACGTAAGTATTTATGGGTATTTATGAAGGTCGCGGCTGACACA
AACTGCCCGTCTCCCGACCTCCTTTCGTCCCCCTTGTCTGCCTAGCTACG
TGATCGCAAGTGCTCCTGATTTCATCCTCATCTATGGGTAAAGCAATTAT
TTCAAAGTGTACGGCCGTCCAACAAGTGCTTTGGGAAATGACCCCCGCAT
GTCACCCCCCTGCTTCCTCGCTTATTTCTTCAACACCCTCCATGTTCTTG
AATCTTGTAGAGGAGCAATCGGACGTGAAATCGCAATAAGCTTGGCAGGA
AAAGGCTGTGAACTTATCCTCCCGGTGCGGGATGCCGAGAGGGGAAAACA
GCTCGTCAAAGACATCCTCGAAAAGGCCGGCGCTCAAGCAGGGCCAGTCC
ACCTGGAGGCATGCGACATGAGCTCCCTCTCGTCCCTGCGAAACTTCGTT
CGGCGGGTCCAAGAGGCTTATCCACGCCTTGACGTCCTCATCAACAACGC
TGCAACCGTGCCTCCCACCCGGCAGCTTACCGAAGACGGTCTGGAGACCC
AATTTTGCGTCAACGTGCTCTCATACTTCCTCCTGATGTTCTCGCTTTCC
TCCTTTCTTCGAAAATCCGGCAAGGCGAGAATCATCAACGTGGCATCCAA
TCTCGCCGGAGATTTAGATCTAACGGACATGCAGTTCGAAAAGCGCAAAT
ATAACAATATGCTCGCCTACAAGCAAAGCAAGCAGGCGGACAGGCAACTC
TCTTGGGCGGGGGCCAAATTTTTTGCGGACTCGGGAGTCAAAGTCTTCGC
CATGCACCCTGGAGTGACCACGTCTGCAATTCTGAAAGGAGTGGGCTATG
AAAAAGGATGGGACTCTGCAGAGTTTTGCGCGAAAATGGCCGTGCAACTG
GTGATGGAAGAGGAAGGGATGAAGACGATGGAAACTGGGACGTACTGGGT
AAACGGGGAGGAGACTGCTTGTCCGTGGCAGGAGAACGACCAAGAATGCC
AGGCCGTGTGGGACTACTGTAAAAAGTGCGCTGGTGTTGAATGAAGGAGC
GCCGTAAAGGAGCCGGCATTGGGATGATTTTAGGGAAGCTTTTCCCCAGA
CTCGACTTTGAAGTGCTGAGAGATTGTCGAGCAAAATAAAGTTGCCTCCG
AACGGGTCACGTGGG
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Coding sequence (CDS) from alignment at CM002456.1:511610..513174-

>rna827 ID=rna827|Name=rna827|organism=Nannochloropsis gaditana|type=CDS|length=1662bp|location=Sequence derived from alignment at CM002456.1:511610..513174- (Nannochloropsis gaditana)
AGGAGCAATCGGACGTGAAATCGCAATAAGCTTGGCAGGAAAAGGCTGTG
AACTTATCCTCCCGGTGCGGGATGCCGAGAGGGGAAAACAGCTCGTCAAA
GACATCCTCGAAAAGGCCGGCGCTCAAGCAGGGCCAGTCCACCTGGAGGC
ATGCGACATGAGCTCCCTCTCGTCCCTGCGAAACTTCGTTCGGCGGGTCC
AAGAGGCTTATCCACGCCTTGACGTCCTCATCAACAACGCTGCAACCGTG
CCTCCCACCCGGCAGCTTACCGAAGACGGTCTGGAGACCCAATTTTGCGT
CAACGTGCTCTCATACTTCCTCCTGATGTTCTCGCTTTCCTCCTTTCTTC
GAAAATCCGGCAAGGCGAGAATCATCAACGTGGCATCCAATCTCGCCGGA
GATTTAGATCTAACGGACATGCAGTTCGAAAAGCGCAAATATAACAATAT
GCTCGCCTACAAGCAAAGCAAGCAGGCGGACAGGCAACTCTCTTGGGCGG
GGGCCAAATTTTTTGCGGACTCGGGAGTCAAAGTCTTCGCCATGCACCCT
GGAGTGACCACGTCTGCAATTCTGAAAGGAGTGGGCTATGAAAAAGGATG
GGACTCTGCAGAGTTTTGCGCGAAAATGGCCGTGCAACTGGTGATGGAAG
AGGAAGGGATGAAGACGATGGAAACTGGGACGTACTGGGTAAACGGGGAG
GAGACTGCTTGTCCGTGGCAGGAGAACGACCAAGAATGCCAGGCCGTGTG
GGACTACTGTAAAAAGTGCGCTGGTGTTGAATGAATGACAAACAGCGGAT
CACGCAAGATTGTCCTTCTCACAGGATCCACAGGAGCAATCGGACGTGAA
ATCGCAATAAGCTTGGCAGGAAAAGGCTGTGAACTTATCCTCCCGGTGCG
GGATGCCGAGAGGGGAAAACAGCTCGTCAAAGACATCCTCGAAAAGGCCG
GCGCTCAAGCAGGGCCAGTCCACCTGGAGGCATGCGACATGAGCTCCCTC
TCGTCCCTGCGAAACTTCGTTCGGCGGGTCCAAGAGGCTTATCCACGCCT
TGACGTCCTCATCAACAACGCTGCAACCGTGCCTCCCACCCGGCAGCTTA
CCGAAGACGGTCTGGAGACCCAATTTTGCGTCAACGTGCTCTCATACTTC
CTCCTGATGTTCTCGCTTTCCTCCTTTCTTCGAAAATCCGGCAAGGCGAG
AATCATCAACGTGGCATCCAATCTCGCCGGAGATTTAGATCTAACGGACA
TGCAGTTCGAAAAGCGCAAATATAACAATATGCTCGCCTACAAGCAAAGC
AAGCAGGCGGACAGGCAACTCTCTTGGGCGGGGGCCAAATTTTTTGCGGA
CTCGGGAGTCAAAGTCTTCGCCATGCACCCTGGAGTGACCACGTCTGCAA
TTCTGAAAGGAGTGGGCTATGAAAAAGGATGGGACTCTGCAGAGTTTTGC
GCGAAAATGGCCGTGCAACTGGTGATGGAAGAGGAAGGGATGAAGACGAT
GGAAACTGGGACGTACTGGGTAAACGGGGAGGAGACTGCTTGTCCGTGGC
AGGAGAACGACCAAGAATGCCAGGCCGTGTGGGACTACTGTAAAAAGTGC
GCTGGTGTTGAATGAATGACAAACAGCGGATCACGCAAGATTGTCCTTCT
CACAGGATCCAC
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Synonyms
Publications