EWM29844.1, cds827 (CDS) Nannochloropsis gaditana

Overview
NameEWM29844.1
Unique Namecds827
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:512766..512812 -
Alignment locationCM002456.1:511731..512514 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29844.1
Productshort-chain dehydrogenase reductase sdr
Orig transcript idgnl|cribi|Naga_100017g16.342.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:512766..512812 -
CM002456.1supercontigCM002456.1:511731..512514 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR002198DH_sc/Rdtase_SDR
IPR016040NAD(P)-bd_dom
IPR002347Glc/ribitol_DH
Homology
BLAST of EWM29844.1 vs. NCBI_GenBank
Match: gi|553179659|ref|XP_005852739.1| (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526] >gi|422295795|gb|EKU23094.1| short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526] >gi|585112425|gb|EWM29844.1| short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana])

HSP 1 Score: 575.474 bits (1482), Expect = 0.000e+0
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0
Query:    1 MTNSGSRKIVLLTGSTGAIGREIAISLAGKGCELILPVRDAERGKQLVKDILEKAGAQAGPVHLEACDMSSLSSLRNFVRRVQEAYPRLDVLINNAATVPPTRQLTEDGLETQFCVNVLSYFLLMFSLSSFLRKSGKARIINVASNLAGDLDLTDMQFEKRKYNNMLAYKQSKQADRQLSWAGAKFFADSGVKVFAMHPGVTTSAILKGVGYEKGWDSAEFCAKMAVQLVMEEEGMKTMETGTYWVNGEETACPWQENDQECQAVWDYCKKCAGVE 276
            MTNSGSRKIVLLTGSTGAIGREIAISLAGKGCELILPVRDAERGKQLVKDILEKAGAQAGPVHLEACDMSSLSSLRNFVRRVQEAYPRLDVLINNAATVPPTRQLTEDGLETQFCVNVLSYFLLMFSLSSFLRKSGKARIINVASNLAGDLDLTDMQFEKRKYNNMLAYKQSKQADRQLSWAGAKFFADSGVKVFAMHPGVTTSAILKGVGYEKGWDSAEFCAKMAVQLVMEEEGMKTMETGTYWVNGEETACPWQENDQECQAVWDYCKKCAGVE
Sbjct:    1 MTNSGSRKIVLLTGSTGAIGREIAISLAGKGCELILPVRDAERGKQLVKDILEKAGAQAGPVHLEACDMSSLSSLRNFVRRVQEAYPRLDVLINNAATVPPTRQLTEDGLETQFCVNVLSYFLLMFSLSSFLRKSGKARIINVASNLAGDLDLTDMQFEKRKYNNMLAYKQSKQADRQLSWAGAKFFADSGVKVFAMHPGVTTSAILKGVGYEKGWDSAEFCAKMAVQLVMEEEGMKTMETGTYWVNGEETACPWQENDQECQAVWDYCKKCAGVE 276          
BLAST of EWM29844.1 vs. NCBI_GenBank
Match: gi|670485267|ref|WP_031433519.1| (retinol dehydrogenase [Methylomarinum vadi])

HSP 1 Score: 170.244 bits (430), Expect = 4.274e-48
Identity = 106/276 (38.41%), Postives = 156/276 (56.52%), Query Frame = 0
Query:    2 TNSGSRKIVLLTGSTGAIGREIAISLAG-KGCELILPVRDAERGKQLVKDILEKAGAQAGP-VHLEACDMSSLSSLRNFVRRVQEAYPRLDVLINNAATVPPTRQLTEDGLETQFCVNVLSYFLLMFSLSSFLRKSGKARIINVASNLAGDLDLTDMQFEKRKYNNMLAYKQSKQADRQLSWAGAKFFADSGVKVFAMHPGVTTSAILKGVGYEKGWDSAEFCAKMAVQLVMEEEGMKTMETGTYWVNGEETACPWQENDQECQAVWDYCKKCAGV 275
            ++S  R + L++G+TGAIG+ IA  LA     +++L  R+ ++G+  V +I+    A   P V  E  D+S L+ +R    R       L  LINNAA  P TRQ T +G+E QF  NVL YF L+      LR S  ARI+NVAS  AG LDL D++F++R+Y+N LAY+QSKQADR LS A A+      + V A HPG   S +   +G+  G +S +  A+  V L  +  G +  ++G Y+ + +ET C +  + Q  QA++  C   A +
Sbjct:   10 SHSNGRTVFLVSGATGAIGKAIARRLAATPNSDVVLVCRNPDKGQCAVDEIV---SATNNPNVRYELADLSRLAEIRALAARWTGP---LHTLINNAACTPRTRQETPEGIELQFATNVLGYFHLIEEFREVLRASAPARIVNVASYWAGGLDLDDLEFKRRRYDNDLAYRQSKQADRMLSKAFAEKLGPYRIAVNACHPGDVNSTLSNNLGF-GGHESPDQGAETPVWLATDPLGQQ--QSGKYFEHKQETNCRFSHDKQVLQALYQACAAYASM 276          
BLAST of EWM29844.1 vs. NCBI_GenBank
Match: gi|522053804|ref|WP_020565013.1| (SDR family oxidoreductase [Methylosarcina fibrata])

HSP 1 Score: 167.933 bits (424), Expect = 3.293e-47
Identity = 104/264 (39.39%), Postives = 147/264 (55.68%), Query Frame = 0
Query:    8 KIVLLTGSTGAIGREIAISLAG-KGCELILPVRDAERGKQLVKDILEKAGAQAGP-VHLEACDMSSLSSLRNFVRRVQEAYPRLDVLINNAATVPPTRQLTEDGLETQFCVNVLSYFLLMFSLSSFLRKSGKARIINVASNLAGDLDLTDMQFEKRKYNNMLAYKQSKQADRQLSWAGAKFFADSGVKVFAMHPGVTTSAILKGVGYEKGWDSAEFCAKMAVQLVMEEEGMKTMETGTYWVNGEETACPWQENDQECQAVWDYC 269
            K+ L+TG+TGAIG+ IA  LAG    E++L  RD  + ++ V +I+    A   P V     D+S    +R    R       L VLINNAA  P +R  T +G+E QF  NVL YF L+   +S L+ S  ARI+NVAS  AG LDL D++F +R+Y+N  AY+QSKQADR LS A A+      + V A HPG   S +   +G+  G ++ +  A   V L    +G    +TG Y+ +G ETAC +  +    +A++D C
Sbjct:   16 KVFLVTGATGAIGKAIARQLAGTDDSEVVLVCRDRSKAERTVNEIIH---ATRNPRVRFILADLSRYREIRGLAERWSGP---LHVLINNAACTPRSRLETPEGIELQFATNVLGYFRLIDEFTSILKASAPARIVNVASYWAGGLDLGDLEFTRRRYDNDKAYRQSKQADRMLSVAFAEKLEPYRIAVNACHPGDVHSVLSHNLGF-GGHETPDQGAATPVWLATRPDGQH--QTGKYYEHGRETACAFSRDRAGVKALYDIC 270          
BLAST of EWM29844.1 vs. NCBI_GenBank
Match: gi|491511937|ref|WP_005369571.1| (MULTISPECIES: retinol dehydrogenase [Methylomicrobium] >gi|380882619|gb|EIC28496.1| dehydrogenase of unknown specificity [Methylomicrobium album BG8])

HSP 1 Score: 167.162 bits (422), Expect = 6.405e-47
Identity = 102/263 (38.78%), Postives = 148/263 (56.27%), Query Frame = 0
Query:    8 KIVLLTGSTGAIGREIAISLAG-KGCELILPVRDAERGKQLVKDILEKAGAQAGPVHLEACDMSSLSSLRNFVRRVQEAYPRLDVLINNAATVPPTRQLTEDGLETQFCVNVLSYFLLMFSLSSFLRKSGKARIINVASNLAGDLDLTDMQFEKRKYNNMLAYKQSKQADRQLSWAGAKFFADSGVKVFAMHPGVTTSAILKGVGYEKGWDSAEFCAKMAVQLVMEEEGMKTMETGTYWVNGEETACPWQENDQECQAVWDYC 269
            K+ L+TG+TGA+G+ IA  LA     E++L  R  ++ KQ VK+I++  G     V  E  D+S    +R  V R       L VLINNAA  P TRQ T +G+E QF  NVL YF L  + +  L+ S  AR++NVAS  AG LDL D++F +R+Y+N  AY+QSKQADR LS A A+  A   + V A HPG   S +   +G+  G ++ +  A   V L     G ++  TG Y+ +  E+ C +  + Q  + +++ C
Sbjct:   17 KVFLVTGATGAMGQAIARQLAATPDSEVVLVCRHQDKAKQAVKEIVDSTGNSR--VRYELADLSRQDDIRGLVARWTGP---LHVLINNAACTPRTRQETPEGIEMQFATNVLGYFWLTEAFTPVLKTSAPARVVNVASYWAGGLDLNDLEFVRRRYDNDTAYRQSKQADRMLSAAFAETLAPYRISVNACHPGDVHSTLSHNLGF-GGHETPDQGAATPVWLATHPVGQQS--TGRYFEHRCESNCAFSRDRQAVRTLYELC 271          
BLAST of EWM29844.1 vs. NCBI_GenBank
Match: gi|503914742|ref|WP_014148736.1| (retinol dehydrogenase [Methylomicrobium alcaliphilum] >gi|351718286|emb|CCE23955.1| putative Retinol dehydrogenase 13 [Methylomicrobium alcaliphilum 20Z])

HSP 1 Score: 163.31 bits (412), Expect = 1.739e-45
Identity = 97/263 (36.88%), Postives = 149/263 (56.65%), Query Frame = 0
Query:    8 KIVLLTGSTGAIGREIAISLAGK-GCELILPVRDAERGKQLVKDILEKAGAQAGPVHLEACDMSSLSSLRNFVRRVQEAYPRLDVLINNAATVPPTRQLTEDGLETQFCVNVLSYFLLMFSLSSFLRKSGKARIINVASNLAGDLDLTDMQFEKRKYNNMLAYKQSKQADRQLSWAGAKFFADSGVKVFAMHPGVTTSAILKGVGYEKGWDSAEFCAKMAVQLVMEEEGMKTMETGTYWVNGEETACPWQENDQECQAVWDYC 269
            ++ L+TG+TGAIG+ IA  LA K   E++L  RD ++ ++ V++I+   G +A  V  E  D+S    +R    R       L  LINNAA  P TRQ T +G+E QF  NVL YF L+ + +  L  S  ARI+NVAS  AG LDL+D++F +R+Y+N  AY+QSKQADR LS A ++      + V A HPG   S +   +G+  G ++ +  A+  V L  +  G++   +G Y+ +  E  C +  + +   +++  C
Sbjct:   16 RVYLVTGATGAIGKAIARQLAAKPNSEVVLVCRDGDKAQRAVREIIAATGNEA--VRFELADLSEHLEIRGLAERWTGP---LHALINNAACTPRTRQETSEGIEMQFATNVLGYFRLIDAFADTLIASAPARIVNVASYWAGGLDLSDLEFTRRRYDNDSAYRQSKQADRMLSAAFSERLLPYRIAVNACHPGDVNSKLSNDLGF-GGHETPDQGAETPVWLATDPVGLQ--HSGRYYEHKREVVCSFSRDREAVDSLYRVC 270          
BLAST of EWM29844.1 vs. NCBI_GenBank
Match: gi|1060730923|ref|WP_069126709.1| (retinol dehydrogenase [Candidatus Thiodiazotropha endolucinida] >gi|1060270154|gb|ODJ86719.1| 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [Candidatus Thiodiazotropha endolucinida])

HSP 1 Score: 156.762 bits (395), Expect = 5.370e-43
Identity = 97/265 (36.60%), Postives = 149/265 (56.23%), Query Frame = 0
Query:    7 RKIVLLTGSTGAIGREIAISLAGKG-CELILPVRDAERGKQLVKDILEKAGAQAGPVHLEACDMSSLSSLRNFVRRVQEAYPRLDVLINNAATVPPTRQLTEDGLETQFCVNVLSYFLLMFSLSSFLRKSGKARIINVASNLAGDLDLTDMQFEKRKYNNMLAYKQSKQADRQLSWAGAKFFADSGVKVFAMHPGVTTSAILKGVGYEKGWDSAEFCAKMAVQLVMEEEGMKTMETGTYWVNGEETACPWQENDQECQAVWDYCK 270
            R   L+TG+TGAIG  IA  LA  G  E++L  R+ ++ ++ V+ I  + G     V  E  D+S   ++R+   R       L +L+NNAA  P  R+ + +G+E QF  NVL YF ++ + + +L  +  A+++NVAS  AG LDL D++F +R YNN  AY+QSKQADR LS A A+  AD  V V A HPG   S +   +G+  G  S E  A   V L +   G++T  TG Y+ N  + +C + ++    + +++ C+
Sbjct:    4 RTCALVTGATGAIGEAIAKGLAADGEREVVLITRNQDKAERAVQRIRRETGN--AHVRFELADLSRGDAIRDLAARWNGP---LHILVNNAAITPRRREESPEGVELQFATNVLGYFRMIRAFTPYLLAADGAQVVNVASYWAGGLDLDDLEFRQRHYNNDTAYRQSKQADRILSAAFAERLADQRVCVNACHPGDVNSTLSNNLGF-GGHQSPEEGADTPVWLAIGGAGIET--TGRYFENRRKVSCGFSKDRNTMERLFEACE 260          
BLAST of EWM29844.1 vs. NCBI_GenBank
Match: gi|1082881717|gb|OGB91647.1| (retinol dehydrogenase, partial [candidate division NC10 bacterium RBG_16_65_8])

HSP 1 Score: 155.606 bits (392), Expect = 1.393e-42
Identity = 101/264 (38.26%), Postives = 147/264 (55.68%), Query Frame = 0
Query:    8 KIVLLTGSTGAIGREIAISLAGK-GCELILPVRDAERGKQLVKDILEKAGAQAGP-VHLEACDMSSLSSLRNFVRRVQEAYPRLDVLINNAATVPPTRQLTEDGLETQFCVNVLSYFLLMFSLSSFLRKSGKARIINVASNLAGDLDLTDMQFEKRKYNNMLAYKQSKQADRQLSWAGAKFFADSGVKVFAMHPGVTTSAILKGVGYEKGWDSAEFCAKMAVQLVMEEEGMKTMETGTYWVNGEETACPWQENDQECQAVWDYC 269
            ++ L+TG+TGAIG+ IA  +A +   E++L  RD  + ++ VK+I   A A   P V  E  D+S  SS+ +   R Q     L VL+NNAA  P  RQ T +G+E QF  NVL YF ++ +    L++S  AR++NV S  AGDLDLTD++F +R Y+N  AY+QSKQADR L+   A+     GV V A HPG   S++   +G+  G  + +  A+    L +E  G     TG Y+   +E  CP+  N    + +   C
Sbjct:    2 RVALITGATGAIGKAIARQIAARAHFEVVLACRDEAKAERAVKEI---ATATGNPNVRYEVVDVSRRSSVASLAERWQGP---LHVLVNNAAVTPRRRQETPEGIELQFATNVLGYFWMIQAFGEHLKRSAPARVVNVGSYWAGDLDLTDLEFRRRPYSNNAAYRQSKQADRMLTVTFAERLKSFGVTVNACHPGDVRSSLSGNLGF-GGSQTPDEGARTPTWLAVEPIGGHV--TGRYFEYLKEVPCPFGANRPAVEELSRTC 256          
BLAST of EWM29844.1 vs. NCBI_GenBank
Match: gi|955178023|emb|CUF76326.1| (short chain dehydrogenase, putative [Bodo saltans])

HSP 1 Score: 155.221 bits (391), Expect = 5.031e-42
Identity = 94/275 (34.18%), Postives = 144/275 (52.36%), Query Frame = 0
Query:    4 SGSRKIVLLTGSTGAIGREIAISLAGKGCELILPVRDAERGKQLVKDILEKAGAQAGPVH-------LEACDMSSLSSLRNFVR---RVQEAYPRLDVLINNAATVPPTRQLTEDGLETQFCVNVLSYFLLMFSLSSFLRKSGKA-------RIINVASNLAGDLDLTDMQFEKRKYNNMLAYKQSKQADRQLSWAGAKFFADSGVKVFAMHPGVTTSAILKGVGYEKGWDSAEFCAKMAVQLVMEEEGMKTMETGTYWVNGEETACPWQENDQE 261
            S SR + ++TG+TG  G  I++ +   G   I   R+AE+G   +  +  +    A   H         A D SSLSS+  F R     Q A P + VL+NNAA VP  R+++ DG+E Q+  NVL Y  ++ SL  FL+ S  A       R++NVAS+ AGDLDL+D++F KR YN   AY+QSKQA+R L+       A   + V + HPGV  S++L G+G+  G D +    K   +  +     + +  G ++   +  +CP+  +  +
Sbjct:    2 SASRPVAIVTGATGTFGEYISLGMLRAGYNTICVGRNAEKGAAFIARLKAELAKDAANTHTTTGEPTFAAIDCSSLSSIEAFARTWAEKQSAAPAIHVLVNNAAIVPDRREVSADGVELQWAANVLGYDWMIRSLLPFLKLSAVAGGGGGEGRVVNVASHYAGDLDLSDVEFTKRTYNANTAYRQSKQANRMLAKLWGDKLAKDNIVVTSCHPGVADSSVLSGLGFTGGGDKS---GKRGSETPLYCALTQKLTPGGFYAEKKLKSCPFASDSAQ 273          
BLAST of EWM29844.1 vs. NCBI_GenBank
Match: gi|558565690|ref|WP_023495835.1| (SDR family oxidoreductase [Methyloglobulus morosus] >gi|557867431|gb|ESS70605.1| hypothetical protein MGMO_121c00010 [Methyloglobulus morosus KoM1])

HSP 1 Score: 153.295 bits (386), Expect = 1.153e-41
Identity = 97/266 (36.47%), Postives = 142/266 (53.38%), Query Frame = 0
Query:    8 KIVLLTGSTGAIGREIAISLAG-KGCELILPVRDAERGKQLVKDILEKAGAQAGP-VHLEACDMSSLSSLRNFVRRVQEAYPRLDVLINNAATVPPTRQLTEDGLETQFCVNVLSYFLLMFSLSSFLRKSGKARIINVASNLAGDLDLTDMQFEKRKYNNMLAYKQSKQADRQLSWAGAKFFADSGVKVFAMHPGVTTSAILKGVGYEKGWDSAEFCAKMAVQLVMEEEGMKTMETGTYWVNGEETACPWQENDQECQAVWDYCKK 271
            ++ L+TG+TGAIG+ IA  LA  +  E++L  RD  + +Q V +++   G    P V  E  D+     +R    R       L  L+NNAA  P  R+ T +G+E QF  NVL Y+ L    +  L+ S  AR++NVAS  AG LDL D++F  RKY+N  AY+QSKQADR LS A A+      + V A HPG   S +   +G+  G ++    A   V L     G +T   G Y+ +  ET CP+  ++    A+++ CK+
Sbjct:   11 RVYLVTGATGAIGKAIARRLAELEDSEVVLVCRDQHKAEQAVNELI---GITDNPKVRFELADLGRHQDIRELAGRWTGP---LHALVNNAACTPRDRRETPEGIEMQFATNVLGYYWLTDEFTKILKASAPARVVNVASYWAGGLDLDDLEFRHRKYDNDKAYRQSKQADRMLSAAFAEKLKPFQIAVNACHPGDVNSVLSNNLGF-GGHETPYQGAGTPVWLATHPIGQET--AGRYFEHLAETNCPFSRDELAVNALYEACKR 267          
BLAST of EWM29844.1 vs. NCBI_GenBank
Match: gi|557032227|gb|ESQ10120.1| (hypothetical protein N838_19250 [uncultured Thiohalocapsa sp. PB-PSB1])

HSP 1 Score: 152.14 bits (383), Expect = 3.384e-41
Identity = 99/271 (36.53%), Postives = 148/271 (54.61%), Query Frame = 0
Query:    1 MTNSGSRKIVLLTGSTGAIGREIAISLAG-KGCELILPVRDAERGKQLVKDILEKAGAQAGPVHLEACDMSSLSSLRNFVRRVQEAYPRLDVLINNAATVPPTRQLTEDGLETQFCVNVLSYFLLMFSLSSFLRKSGKARIINVASNLAGDLDLTDMQFEKRKYNNMLAYKQSKQADRQLSWAGAKFFADSGVKVFAMHPGVTTSAILKGVGYEKGWDSAEFCAKMAVQLVMEEEGMKTMETGTYWVNGEETACPWQENDQECQAVWDYCK 270
            MT+ G ++I L+TG+TG IG+ IA  +A   G E++L  RDA + +  V +I E+ G  AG  H E  D+S  +S+     R Q     + VL+NNAA     R  T +G+E QF  NVL YF ++ +    L  +  +R++NVAS  AG L L D++F  R Y+N  AY+QSKQADR L+ A A+     G+ V A HPG  +S + + +G+  G ++ E  A     L   + G+ T ETG Y+     T C +  +     A++  C+
Sbjct:    1 MTDRGEKRIALVTGATGVIGKAIAERIATTPGFEVVLLCRDATKAEAAVTEIRERTG-NAGVSH-EIVDLSRRASIAELAMRWQGP---VHVLVNNAAITARQRSETPEGIELQFATNVLGYFRMIQAFRDRLAAAAPSRVVNVASYWAGGLHLRDLEFRLRHYDNDSAYRQSKQADRMLTVAFAERLRGDGIDVNACHPGDLSSTLSRNLGF-GGHETPEQAADTPAWLAT-DPGL-TGETGRYYERRRVTTCRFGSDADAVDALFQACE 263          
The following BLAST results are available for this feature:
BLAST of EWM29844.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553179659|ref|XP_005852739.1|0.000e+0100.00short-chain dehydrogenase reductase sdr [Nannochlo... [more]
gi|670485267|ref|WP_031433519.1|4.274e-4838.41retinol dehydrogenase [Methylomarinum vadi][more]
gi|522053804|ref|WP_020565013.1|3.293e-4739.39SDR family oxidoreductase [Methylosarcina fibrata][more]
gi|491511937|ref|WP_005369571.1|6.405e-4738.78MULTISPECIES: retinol dehydrogenase [Methylomicrob... [more]
gi|503914742|ref|WP_014148736.1|1.739e-4536.88retinol dehydrogenase [Methylomicrobium alcaliphil... [more]
gi|1060730923|ref|WP_069126709.1|5.370e-4336.60retinol dehydrogenase [Candidatus Thiodiazotropha ... [more]
gi|1082881717|gb|OGB91647.1|1.393e-4238.26retinol dehydrogenase, partial [candidate division... [more]
gi|955178023|emb|CUF76326.1|5.031e-4234.18short chain dehydrogenase, putative [Bodo saltans][more]
gi|558565690|ref|WP_023495835.1|1.153e-4136.47SDR family oxidoreductase [Methyloglobulus morosus... [more]
gi|557032227|gb|ESQ10120.1|3.384e-4136.53hypothetical protein N838_19250 [uncultured Thioha... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna827rna827Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications