EWM29844.1, cds827 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29844.1 vs. NCBI_GenBank
Match: gi|553179659|ref|XP_005852739.1| (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526] >gi|422295795|gb|EKU23094.1| short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526] >gi|585112425|gb|EWM29844.1| short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana]) HSP 1 Score: 575.474 bits (1482), Expect = 0.000e+0 Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0 Query: 1 MTNSGSRKIVLLTGSTGAIGREIAISLAGKGCELILPVRDAERGKQLVKDILEKAGAQAGPVHLEACDMSSLSSLRNFVRRVQEAYPRLDVLINNAATVPPTRQLTEDGLETQFCVNVLSYFLLMFSLSSFLRKSGKARIINVASNLAGDLDLTDMQFEKRKYNNMLAYKQSKQADRQLSWAGAKFFADSGVKVFAMHPGVTTSAILKGVGYEKGWDSAEFCAKMAVQLVMEEEGMKTMETGTYWVNGEETACPWQENDQECQAVWDYCKKCAGVE 276 MTNSGSRKIVLLTGSTGAIGREIAISLAGKGCELILPVRDAERGKQLVKDILEKAGAQAGPVHLEACDMSSLSSLRNFVRRVQEAYPRLDVLINNAATVPPTRQLTEDGLETQFCVNVLSYFLLMFSLSSFLRKSGKARIINVASNLAGDLDLTDMQFEKRKYNNMLAYKQSKQADRQLSWAGAKFFADSGVKVFAMHPGVTTSAILKGVGYEKGWDSAEFCAKMAVQLVMEEEGMKTMETGTYWVNGEETACPWQENDQECQAVWDYCKKCAGVE Sbjct: 1 MTNSGSRKIVLLTGSTGAIGREIAISLAGKGCELILPVRDAERGKQLVKDILEKAGAQAGPVHLEACDMSSLSSLRNFVRRVQEAYPRLDVLINNAATVPPTRQLTEDGLETQFCVNVLSYFLLMFSLSSFLRKSGKARIINVASNLAGDLDLTDMQFEKRKYNNMLAYKQSKQADRQLSWAGAKFFADSGVKVFAMHPGVTTSAILKGVGYEKGWDSAEFCAKMAVQLVMEEEGMKTMETGTYWVNGEETACPWQENDQECQAVWDYCKKCAGVE 276
BLAST of EWM29844.1 vs. NCBI_GenBank
Match: gi|670485267|ref|WP_031433519.1| (retinol dehydrogenase [Methylomarinum vadi]) HSP 1 Score: 170.244 bits (430), Expect = 4.274e-48 Identity = 106/276 (38.41%), Postives = 156/276 (56.52%), Query Frame = 0 Query: 2 TNSGSRKIVLLTGSTGAIGREIAISLAG-KGCELILPVRDAERGKQLVKDILEKAGAQAGP-VHLEACDMSSLSSLRNFVRRVQEAYPRLDVLINNAATVPPTRQLTEDGLETQFCVNVLSYFLLMFSLSSFLRKSGKARIINVASNLAGDLDLTDMQFEKRKYNNMLAYKQSKQADRQLSWAGAKFFADSGVKVFAMHPGVTTSAILKGVGYEKGWDSAEFCAKMAVQLVMEEEGMKTMETGTYWVNGEETACPWQENDQECQAVWDYCKKCAGV 275 ++S R + L++G+TGAIG+ IA LA +++L R+ ++G+ V +I+ A P V E D+S L+ +R R L LINNAA P TRQ T +G+E QF NVL YF L+ LR S ARI+NVAS AG LDL D++F++R+Y+N LAY+QSKQADR LS A A+ + V A HPG S + +G+ G +S + A+ V L + G + ++G Y+ + +ET C + + Q QA++ C A + Sbjct: 10 SHSNGRTVFLVSGATGAIGKAIARRLAATPNSDVVLVCRNPDKGQCAVDEIV---SATNNPNVRYELADLSRLAEIRALAARWTGP---LHTLINNAACTPRTRQETPEGIELQFATNVLGYFHLIEEFREVLRASAPARIVNVASYWAGGLDLDDLEFKRRRYDNDLAYRQSKQADRMLSKAFAEKLGPYRIAVNACHPGDVNSTLSNNLGF-GGHESPDQGAETPVWLATDPLGQQ--QSGKYFEHKQETNCRFSHDKQVLQALYQACAAYASM 276
BLAST of EWM29844.1 vs. NCBI_GenBank
Match: gi|522053804|ref|WP_020565013.1| (SDR family oxidoreductase [Methylosarcina fibrata]) HSP 1 Score: 167.933 bits (424), Expect = 3.293e-47 Identity = 104/264 (39.39%), Postives = 147/264 (55.68%), Query Frame = 0 Query: 8 KIVLLTGSTGAIGREIAISLAG-KGCELILPVRDAERGKQLVKDILEKAGAQAGP-VHLEACDMSSLSSLRNFVRRVQEAYPRLDVLINNAATVPPTRQLTEDGLETQFCVNVLSYFLLMFSLSSFLRKSGKARIINVASNLAGDLDLTDMQFEKRKYNNMLAYKQSKQADRQLSWAGAKFFADSGVKVFAMHPGVTTSAILKGVGYEKGWDSAEFCAKMAVQLVMEEEGMKTMETGTYWVNGEETACPWQENDQECQAVWDYC 269 K+ L+TG+TGAIG+ IA LAG E++L RD + ++ V +I+ A P V D+S +R R L VLINNAA P +R T +G+E QF NVL YF L+ +S L+ S ARI+NVAS AG LDL D++F +R+Y+N AY+QSKQADR LS A A+ + V A HPG S + +G+ G ++ + A V L +G +TG Y+ +G ETAC + + +A++D C Sbjct: 16 KVFLVTGATGAIGKAIARQLAGTDDSEVVLVCRDRSKAERTVNEIIH---ATRNPRVRFILADLSRYREIRGLAERWSGP---LHVLINNAACTPRSRLETPEGIELQFATNVLGYFRLIDEFTSILKASAPARIVNVASYWAGGLDLGDLEFTRRRYDNDKAYRQSKQADRMLSVAFAEKLEPYRIAVNACHPGDVHSVLSHNLGF-GGHETPDQGAATPVWLATRPDGQH--QTGKYYEHGRETACAFSRDRAGVKALYDIC 270
BLAST of EWM29844.1 vs. NCBI_GenBank
Match: gi|491511937|ref|WP_005369571.1| (MULTISPECIES: retinol dehydrogenase [Methylomicrobium] >gi|380882619|gb|EIC28496.1| dehydrogenase of unknown specificity [Methylomicrobium album BG8]) HSP 1 Score: 167.162 bits (422), Expect = 6.405e-47 Identity = 102/263 (38.78%), Postives = 148/263 (56.27%), Query Frame = 0 Query: 8 KIVLLTGSTGAIGREIAISLAG-KGCELILPVRDAERGKQLVKDILEKAGAQAGPVHLEACDMSSLSSLRNFVRRVQEAYPRLDVLINNAATVPPTRQLTEDGLETQFCVNVLSYFLLMFSLSSFLRKSGKARIINVASNLAGDLDLTDMQFEKRKYNNMLAYKQSKQADRQLSWAGAKFFADSGVKVFAMHPGVTTSAILKGVGYEKGWDSAEFCAKMAVQLVMEEEGMKTMETGTYWVNGEETACPWQENDQECQAVWDYC 269 K+ L+TG+TGA+G+ IA LA E++L R ++ KQ VK+I++ G V E D+S +R V R L VLINNAA P TRQ T +G+E QF NVL YF L + + L+ S AR++NVAS AG LDL D++F +R+Y+N AY+QSKQADR LS A A+ A + V A HPG S + +G+ G ++ + A V L G ++ TG Y+ + E+ C + + Q + +++ C Sbjct: 17 KVFLVTGATGAMGQAIARQLAATPDSEVVLVCRHQDKAKQAVKEIVDSTGNSR--VRYELADLSRQDDIRGLVARWTGP---LHVLINNAACTPRTRQETPEGIEMQFATNVLGYFWLTEAFTPVLKTSAPARVVNVASYWAGGLDLNDLEFVRRRYDNDTAYRQSKQADRMLSAAFAETLAPYRISVNACHPGDVHSTLSHNLGF-GGHETPDQGAATPVWLATHPVGQQS--TGRYFEHRCESNCAFSRDRQAVRTLYELC 271
BLAST of EWM29844.1 vs. NCBI_GenBank
Match: gi|503914742|ref|WP_014148736.1| (retinol dehydrogenase [Methylomicrobium alcaliphilum] >gi|351718286|emb|CCE23955.1| putative Retinol dehydrogenase 13 [Methylomicrobium alcaliphilum 20Z]) HSP 1 Score: 163.31 bits (412), Expect = 1.739e-45 Identity = 97/263 (36.88%), Postives = 149/263 (56.65%), Query Frame = 0 Query: 8 KIVLLTGSTGAIGREIAISLAGK-GCELILPVRDAERGKQLVKDILEKAGAQAGPVHLEACDMSSLSSLRNFVRRVQEAYPRLDVLINNAATVPPTRQLTEDGLETQFCVNVLSYFLLMFSLSSFLRKSGKARIINVASNLAGDLDLTDMQFEKRKYNNMLAYKQSKQADRQLSWAGAKFFADSGVKVFAMHPGVTTSAILKGVGYEKGWDSAEFCAKMAVQLVMEEEGMKTMETGTYWVNGEETACPWQENDQECQAVWDYC 269 ++ L+TG+TGAIG+ IA LA K E++L RD ++ ++ V++I+ G +A V E D+S +R R L LINNAA P TRQ T +G+E QF NVL YF L+ + + L S ARI+NVAS AG LDL+D++F +R+Y+N AY+QSKQADR LS A ++ + V A HPG S + +G+ G ++ + A+ V L + G++ +G Y+ + E C + + + +++ C Sbjct: 16 RVYLVTGATGAIGKAIARQLAAKPNSEVVLVCRDGDKAQRAVREIIAATGNEA--VRFELADLSEHLEIRGLAERWTGP---LHALINNAACTPRTRQETSEGIEMQFATNVLGYFRLIDAFADTLIASAPARIVNVASYWAGGLDLSDLEFTRRRYDNDSAYRQSKQADRMLSAAFSERLLPYRIAVNACHPGDVNSKLSNDLGF-GGHETPDQGAETPVWLATDPVGLQ--HSGRYYEHKREVVCSFSRDREAVDSLYRVC 270
BLAST of EWM29844.1 vs. NCBI_GenBank
Match: gi|1060730923|ref|WP_069126709.1| (retinol dehydrogenase [Candidatus Thiodiazotropha endolucinida] >gi|1060270154|gb|ODJ86719.1| 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [Candidatus Thiodiazotropha endolucinida]) HSP 1 Score: 156.762 bits (395), Expect = 5.370e-43 Identity = 97/265 (36.60%), Postives = 149/265 (56.23%), Query Frame = 0 Query: 7 RKIVLLTGSTGAIGREIAISLAGKG-CELILPVRDAERGKQLVKDILEKAGAQAGPVHLEACDMSSLSSLRNFVRRVQEAYPRLDVLINNAATVPPTRQLTEDGLETQFCVNVLSYFLLMFSLSSFLRKSGKARIINVASNLAGDLDLTDMQFEKRKYNNMLAYKQSKQADRQLSWAGAKFFADSGVKVFAMHPGVTTSAILKGVGYEKGWDSAEFCAKMAVQLVMEEEGMKTMETGTYWVNGEETACPWQENDQECQAVWDYCK 270 R L+TG+TGAIG IA LA G E++L R+ ++ ++ V+ I + G V E D+S ++R+ R L +L+NNAA P R+ + +G+E QF NVL YF ++ + + +L + A+++NVAS AG LDL D++F +R YNN AY+QSKQADR LS A A+ AD V V A HPG S + +G+ G S E A V L + G++T TG Y+ N + +C + ++ + +++ C+ Sbjct: 4 RTCALVTGATGAIGEAIAKGLAADGEREVVLITRNQDKAERAVQRIRRETGN--AHVRFELADLSRGDAIRDLAARWNGP---LHILVNNAAITPRRREESPEGVELQFATNVLGYFRMIRAFTPYLLAADGAQVVNVASYWAGGLDLDDLEFRQRHYNNDTAYRQSKQADRILSAAFAERLADQRVCVNACHPGDVNSTLSNNLGF-GGHQSPEEGADTPVWLAIGGAGIET--TGRYFENRRKVSCGFSKDRNTMERLFEACE 260
BLAST of EWM29844.1 vs. NCBI_GenBank
Match: gi|1082881717|gb|OGB91647.1| (retinol dehydrogenase, partial [candidate division NC10 bacterium RBG_16_65_8]) HSP 1 Score: 155.606 bits (392), Expect = 1.393e-42 Identity = 101/264 (38.26%), Postives = 147/264 (55.68%), Query Frame = 0 Query: 8 KIVLLTGSTGAIGREIAISLAGK-GCELILPVRDAERGKQLVKDILEKAGAQAGP-VHLEACDMSSLSSLRNFVRRVQEAYPRLDVLINNAATVPPTRQLTEDGLETQFCVNVLSYFLLMFSLSSFLRKSGKARIINVASNLAGDLDLTDMQFEKRKYNNMLAYKQSKQADRQLSWAGAKFFADSGVKVFAMHPGVTTSAILKGVGYEKGWDSAEFCAKMAVQLVMEEEGMKTMETGTYWVNGEETACPWQENDQECQAVWDYC 269 ++ L+TG+TGAIG+ IA +A + E++L RD + ++ VK+I A A P V E D+S SS+ + R Q L VL+NNAA P RQ T +G+E QF NVL YF ++ + L++S AR++NV S AGDLDLTD++F +R Y+N AY+QSKQADR L+ A+ GV V A HPG S++ +G+ G + + A+ L +E G TG Y+ +E CP+ N + + C Sbjct: 2 RVALITGATGAIGKAIARQIAARAHFEVVLACRDEAKAERAVKEI---ATATGNPNVRYEVVDVSRRSSVASLAERWQGP---LHVLVNNAAVTPRRRQETPEGIELQFATNVLGYFWMIQAFGEHLKRSAPARVVNVGSYWAGDLDLTDLEFRRRPYSNNAAYRQSKQADRMLTVTFAERLKSFGVTVNACHPGDVRSSLSGNLGF-GGSQTPDEGARTPTWLAVEPIGGHV--TGRYFEYLKEVPCPFGANRPAVEELSRTC 256
BLAST of EWM29844.1 vs. NCBI_GenBank
Match: gi|955178023|emb|CUF76326.1| (short chain dehydrogenase, putative [Bodo saltans]) HSP 1 Score: 155.221 bits (391), Expect = 5.031e-42 Identity = 94/275 (34.18%), Postives = 144/275 (52.36%), Query Frame = 0 Query: 4 SGSRKIVLLTGSTGAIGREIAISLAGKGCELILPVRDAERGKQLVKDILEKAGAQAGPVH-------LEACDMSSLSSLRNFVR---RVQEAYPRLDVLINNAATVPPTRQLTEDGLETQFCVNVLSYFLLMFSLSSFLRKSGKA-------RIINVASNLAGDLDLTDMQFEKRKYNNMLAYKQSKQADRQLSWAGAKFFADSGVKVFAMHPGVTTSAILKGVGYEKGWDSAEFCAKMAVQLVMEEEGMKTMETGTYWVNGEETACPWQENDQE 261 S SR + ++TG+TG G I++ + G I R+AE+G + + + A H A D SSLSS+ F R Q A P + VL+NNAA VP R+++ DG+E Q+ NVL Y ++ SL FL+ S A R++NVAS+ AGDLDL+D++F KR YN AY+QSKQA+R L+ A + V + HPGV S++L G+G+ G D + K + + + + G ++ + +CP+ + + Sbjct: 2 SASRPVAIVTGATGTFGEYISLGMLRAGYNTICVGRNAEKGAAFIARLKAELAKDAANTHTTTGEPTFAAIDCSSLSSIEAFARTWAEKQSAAPAIHVLVNNAAIVPDRREVSADGVELQWAANVLGYDWMIRSLLPFLKLSAVAGGGGGEGRVVNVASHYAGDLDLSDVEFTKRTYNANTAYRQSKQANRMLAKLWGDKLAKDNIVVTSCHPGVADSSVLSGLGFTGGGDKS---GKRGSETPLYCALTQKLTPGGFYAEKKLKSCPFASDSAQ 273
BLAST of EWM29844.1 vs. NCBI_GenBank
Match: gi|558565690|ref|WP_023495835.1| (SDR family oxidoreductase [Methyloglobulus morosus] >gi|557867431|gb|ESS70605.1| hypothetical protein MGMO_121c00010 [Methyloglobulus morosus KoM1]) HSP 1 Score: 153.295 bits (386), Expect = 1.153e-41 Identity = 97/266 (36.47%), Postives = 142/266 (53.38%), Query Frame = 0 Query: 8 KIVLLTGSTGAIGREIAISLAG-KGCELILPVRDAERGKQLVKDILEKAGAQAGP-VHLEACDMSSLSSLRNFVRRVQEAYPRLDVLINNAATVPPTRQLTEDGLETQFCVNVLSYFLLMFSLSSFLRKSGKARIINVASNLAGDLDLTDMQFEKRKYNNMLAYKQSKQADRQLSWAGAKFFADSGVKVFAMHPGVTTSAILKGVGYEKGWDSAEFCAKMAVQLVMEEEGMKTMETGTYWVNGEETACPWQENDQECQAVWDYCKK 271 ++ L+TG+TGAIG+ IA LA + E++L RD + +Q V +++ G P V E D+ +R R L L+NNAA P R+ T +G+E QF NVL Y+ L + L+ S AR++NVAS AG LDL D++F RKY+N AY+QSKQADR LS A A+ + V A HPG S + +G+ G ++ A V L G +T G Y+ + ET CP+ ++ A+++ CK+ Sbjct: 11 RVYLVTGATGAIGKAIARRLAELEDSEVVLVCRDQHKAEQAVNELI---GITDNPKVRFELADLGRHQDIRELAGRWTGP---LHALVNNAACTPRDRRETPEGIEMQFATNVLGYYWLTDEFTKILKASAPARVVNVASYWAGGLDLDDLEFRHRKYDNDKAYRQSKQADRMLSAAFAEKLKPFQIAVNACHPGDVNSVLSNNLGF-GGHETPYQGAGTPVWLATHPIGQET--AGRYFEHLAETNCPFSRDELAVNALYEACKR 267
BLAST of EWM29844.1 vs. NCBI_GenBank
Match: gi|557032227|gb|ESQ10120.1| (hypothetical protein N838_19250 [uncultured Thiohalocapsa sp. PB-PSB1]) HSP 1 Score: 152.14 bits (383), Expect = 3.384e-41 Identity = 99/271 (36.53%), Postives = 148/271 (54.61%), Query Frame = 0 Query: 1 MTNSGSRKIVLLTGSTGAIGREIAISLAG-KGCELILPVRDAERGKQLVKDILEKAGAQAGPVHLEACDMSSLSSLRNFVRRVQEAYPRLDVLINNAATVPPTRQLTEDGLETQFCVNVLSYFLLMFSLSSFLRKSGKARIINVASNLAGDLDLTDMQFEKRKYNNMLAYKQSKQADRQLSWAGAKFFADSGVKVFAMHPGVTTSAILKGVGYEKGWDSAEFCAKMAVQLVMEEEGMKTMETGTYWVNGEETACPWQENDQECQAVWDYCK 270 MT+ G ++I L+TG+TG IG+ IA +A G E++L RDA + + V +I E+ G AG H E D+S +S+ R Q + VL+NNAA R T +G+E QF NVL YF ++ + L + +R++NVAS AG L L D++F R Y+N AY+QSKQADR L+ A A+ G+ V A HPG +S + + +G+ G ++ E A L + G+ T ETG Y+ T C + + A++ C+ Sbjct: 1 MTDRGEKRIALVTGATGVIGKAIAERIATTPGFEVVLLCRDATKAEAAVTEIRERTG-NAGVSH-EIVDLSRRASIAELAMRWQGP---VHVLVNNAAITARQRSETPEGIELQFATNVLGYFRMIQAFRDRLAAAAPSRVVNVASYWAGGLHLRDLEFRLRHYDNDSAYRQSKQADRMLTVAFAERLRGDGIDVNACHPGDLSSTLSRNLGF-GGHETPEQAADTPAWLAT-DPGL-TGETGRYYERRRVTTCRFGSDADAVDALFQACE 263 The following BLAST results are available for this feature:
BLAST of EWM29844.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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