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Properties
| Property Name | Value |
|---|
| Product | rna polymerase sigma-e factor |
| Orig transcript id | gnl|cribi|Naga_100011g78.3422.mrna |
| Orig protein id | gnl|cribi|Naga_100011g78.3422 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037248.1 | supercontig | KK037248.1:228306..230794 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8266 ID=rna8266|Name=rna8266|organism=Nannochloropsis gaditana|type=mRNA|length=1111bp
GGACATTTGATGCACGATGCCTTAGAGGTGGTGCGTGGCAACTGTGTGGT
GTACGGTACTTGTCGCGAGGGGAGTGCCTCACTACGGCATAGCGGGTGGT
GGGGAGGCCTCGCTTTCTTCTTAGGCTTTCGCGGCCCGGCCTGTGTTCGT
CTGACCACTTGGACGGAGACCAGGGCTACGAGATGCTGGATCGGGTTGTT
CATTATGCACGGCAGCATTGATGAGTCTTGCAAAGCCGGGCATGGAGCTC
AATTTTCGAGAACTTGATGTCGTGGGGGGGGGTTAAAGCCACTCCACACC
GTCGTTTCCTCGCTCCTCATTCCCTTCCTTCCTCCCTTCGATGGCTTTCG
TCCACAGGCACAAAATGAAGTACAGCCCAAACGTCTCCTCTTCGCGGCGT
AAGAGTCGTAAGGCTCACTTTACTGCGCCGTCGCACATCCGACGGAAGCT
CATGACTGCGCCTTTGTCGAAGGAGCTGCAGGCGAAGTACAAGGTGCGAT
CAATGCCTATCCGGAAGAGTGACGAGGTGCAAGTGGTGCGTGGAGTCTTC
AAGAACCGTGAAGGGAAAGTGACAGCGGTATACCGGAAGAAATTTGTAAT
CCACATCGATCGCATCACCCGGGAGAAGGCGAACGGGGCGACTGTTAACG
TGGGCATCGACGCGTCCAAGGTGCATATCACCAAGCTGAAGATGAACAAA
GCACGCAAGGAGATTTTGGAGCGCAAGGCACGCACTGGAGCCGCGGGGAA
GGGGAAGGTAACGGAGGCCGAAGTTGGATCTAACATGGGTGGCGTCGATT
AGAGTTGAGAGGCACAAGGAAAGGATGAGTCATTCCTTGCGCTCTCCCTG
CCATAGCTACGGCAGCGATGAGATTTGTAGAGAAGAAGGCTCCTATTTTT
TGACAGTCATGATATCTCTGATAACGTGTGGGGTGACGGTGAGAGCAAAG
GAATTGTTTGTTTTTCATTCTCTTTTTCCAGCGCGAAACTCACTCAGCGA
AGAATGACGTGAAGAATAAAATGATTGTCGGGAAACGACGTACTTCGTTT
CAAGTTATCAGTTGTTGCGCGCGCACAATACTAGATGGGCGCCTGGCAGA
AATTTCCAACA back to topprotein sequence of rna8266 >rna8266-protein ID=rna8266-protein|Name=rna8266|organism=Nannochloropsis gaditana|type=polypeptide|length=641bp
MRRRRQRAEERRRSSAPSCTRIRVPAQRVLHKAPLPSHGMFRSLNGPFLY
VVLLHMLLPRGAAFVAQLPYQSHVACGSRPWTWTAAGRAWESASHSSLGA
TRVADETVPWQDEGDHAAVARNITEASAGREARLARKAARRRQRQLRVEG
QGGAHEERGNVATRYMLPSPTEAGLRTRDGPRSRLGARGHGESAAPGLTP
PSRPHTVDLYVPSADLDVMLDWADRLPPALDRPGEAAGSGGGSSLPSLRP
RAAHQLVWLDKEQRLLALAQMVMGMEKVRAEMVEKSAPGEGARGITTRML
AARLGLSPEEAAAFYKLGLRARSYILVSMHSLIAALARKYGATFGVDEAE
LVQEGYRGAMQALERYDRGKAEATGATFRAFSYFYVMSAMITAARKELHL
DATPSSTRNAASMRLPPGTQGRGDASFLLPAGTAGALPAAASGLGGSRPV
STTEIPPELLWKDVKAKEDDGEWKHGAEEGEEEDPEEAAEAALYRRPLPR
PGRRPRLGPMRRVTRMGPAQEVIAEAVGAGKQGAGARGDLGVGGRRAELF
GVDPETTRPAYEIVDESKRAWELGMFLRRAAQELSPQDMEVLSLLYGLKG
HSPLSRPQVARKLGLSTAVVSKSERRALKKLREMLNIGVVE back to topmRNA from alignment at KK037248.1:228306..230794+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8266 ID=rna8266|Name=rna8266|organism=Nannochloropsis gaditana|type=mRNA|length=2489bp|location=Sequence derived from alignment at KK037248.1:228306..230794+ (Nannochloropsis gaditana)
TGGTCGGGATGGTGTGCATGACCGTGTGAATTGCCAGTTTCCGATTTCTT
TGTGAAGTGGACTTGTGACTGGCAACGCGTGGATGCAGTGCACCGTTTTG
TGCGTCCCACTAACCTTCCCCTTATCTACCCCCTTAGGGGCCCCTGGGCT
CGGACGACGAGGCTCGTGTACAGCAAGTTGAGGCCGTCGACATACCACAC
CAGGGCCAAAACGACACCAATTTTTGGCATTAGCATAGGACGGGGGAcat
gagaaggagacggcaaAGGGCTGAGGAGCGTCGAAGATCATCTGCGCCGT
CATGTACGCGCATTCGAGTGCCAGCACAGCGGGTCTTACACAAGgcgccg
cttccttcacATGGAATGTTCCGGTCCCTCAACGGGCCTTTCCTGTATGT
GGTGCTGCTGCACATGCTTCTTCCCAGAGGTGCTGCCTTCGTTGCACAAC
TGCCATATCAATCCCATGTCGCGTGCGGAAGTCGGCCATGGACATGGACA
GCGGCAGGTCGGGCTTGGGAATCAGCCTCGCACTCCTCGCTGGGCGCCAC
TCGCGTAGCGGACGAGACAGTTCCATGGCAAGATGAGGGAGACCACGCGG
CGGTGGCGAGGAACATTACTGAGGCCtcagcggggagggaggcaaggttA
GCTCGGAAGGCTGCTCGTCGACGCCAGAGGCAGCTCCGTGtggagggcca
gggcggggcgcATGAAGAGAGGGGCAACGTGGCCACCCGCTAcatgctcc
cttccccgaccGAAGCGGGCCTAAGGACTCGTGATGGCCCCCGTTCCCGT
CTCGGCGCCCGGGGGCATGGAGAGAGCGCGGCGCCCGGGctcaccccccc
ctctcgACCTCACACGGTGGACCTATACGTGCCCTCGGCGGACTTGGACG
TCATGCTCGACTGGGCGGACCGGCTGCCCCCGGCGCTTGATAGGCCCGGC
GAAGCTGCaggctcgggggggggaagcagcctgccctctcttcgcccGCG
TGCGGCCCACCAACTCGTCTGGCTCGACAAGGAGCAGCGGCTCTTGGCAC
TCGCCCAGATggtgatggggatggagaaagTCCGGGCCGAGATGGTCGAG
AAGTCGGCCCCTGGCGAGGGAGCCCGAGGCATCACGACCAGGATGCTCGC
GGCGCGGCTGGGCCTCTCTcccgaggaggcggcggcctttTACAAGCTGG
GTCTCAGGGCGCGGTCTTACATCCTCGTCTCCATGCACTCCCTCATTgcc
gccttggcccgcaAGTACGGAGCCACGTtcggggtggacgaggcagagct
AGTGCAGGAGGGGTACAGGGGCGCGATGCAAGCGCTGGAGCGGTACGACC
GGGGCAAGGCCGAGGCGACCGGGGCCACCTTCCGTGCCTTCTCCTACTTC
TATGTCATGTCCGCCATGATCACGGCGGCACGGAAAGAACTCCATCTTGA
TGCGACCCCCTCGTCGACACGAAATGCCGCTTCGATGCGGCTGCCACCGG
GCACGCAAGGGCGGGGCGACGcgagcttcctcctgcctgccGGGACCGCC
GGGGCATTGCCGGCCGCAGCATCGGGACTAGGAGGCTCTCGGCCTGTGTC
CACGACGGAAATTCCACCTGAGCTTTTATGGAAGGACGTCAAGGCTAaag
aggatgacggggaATGGAAGCACggggccgaggaaggggaggaggaggac
cctGAGGAGGCTGCCGAAGCCGCCCTCTACCGAAGGCCACTCCCTCGCCC
GGGACGACGGCCGCGACTTGGGCCGATGCGCCGCGTGACTCGCATGGGGC
CCGCACAGGAGGTAatcgcggaggcggtgggcgcAGGCAAgcagggggcc
ggggccaggggggacTTGGGTGTGGGCGGCCGGCGCGCAGAGCTGTTTGG
TGTGGACCCGGAGACGACTCGGCCCGCTTATGAAATTGTAGACGAGAGCA
AGCGGGCGTGGGAGCTTGGCATGTTCCTGCGCCGAGCTGCCCAGGAGCTC
TCGCCGCAGGACATGGAGGTGTTGTCCTTGCTCTACGGCTTGAAGGGCCA
CAGCCCCCTATCTCGCCCGCAAGTGGCGCGGAAGTTGGGCTTGTCGACCG
CGGTGGTCAGTAAGAGCGAGCGTCGGGCGTTGAAGAAGCTGAGAGAGATG
CTGAACATTGGCGTTGTCGAGTAGAGGGCGGGGGTTCGGAGGGTCGAGCT
CCCCCCAAAAGCCAAGGGCGCGCGGGACGGTCCcaaggctggagggaggg
agggactttGGTTGGTGTACATCGAAGTTAGTTAGAGTAGAGACAGGCGT
GCGCTCTTTTTTAATGATGACTGCCGCGTGAGGCAGTCTGAAAATTGAGA
CGACTTCCATGAAATTAATTGATCTAGACATCCCAGGGGGTGCCTTGAAA
ATGTATGATAGCATGTCTTTTGAAGAACCGACAGACTAATTAAAAAAATG
CAGAGGATTGGCAACCTGCAGAACGAAGTGATTTTCTCT back to topCoding sequence (CDS) from alignment at KK037248.1:228306..230794+ >rna8266 ID=rna8266|Name=rna8266|organism=Nannochloropsis gaditana|type=CDS|length=1926bp|location=Sequence derived from alignment at KK037248.1:228306..230794+ (Nannochloropsis gaditana)
atgagaaggagacggcaaAGGGCTGAGGAGCGTCGAAGATCATCTGCGCC
GTCATGTACGCGCATTCGAGTGCCAGCACAGCGGGTCTTACACAAGgcgc
cgcttccttcacATGGAATGTTCCGGTCCCTCAACGGGCCTTTCCTGTAT
GTGGTGCTGCTGCACATGCTTCTTCCCAGAGGTGCTGCCTTCGTTGCACA
ACTGCCATATCAATCCCATGTCGCGTGCGGAAGTCGGCCATGGACATGGA
CAGCGGCAGGTCGGGCTTGGGAATCAGCCTCGCACTCCTCGCTGGGCGCC
ACTCGCGTAGCGGACGAGACAGTTCCATGGCAAGATGAGGGAGACCACGC
GGCGGTGGCGAGGAACATTACTGAGGCCtcagcggggagggaggcaaggt
tAGCTCGGAAGGCTGCTCGTCGACGCCAGAGGCAGCTCCGTGtggagggc
cagggcggggcgcATGAAGAGAGGGGCAACGTGGCCACCCGCTAcatgct
cccttccccgaccGAAGCGGGCCTAAGGACTCGTGATGGCCCCCGTTCCC
GTCTCGGCGCCCGGGGGCATGGAGAGAGCGCGGCGCCCGGGctcaccccc
ccctctcgACCTCACACGGTGGACCTATACGTGCCCTCGGCGGACTTGGA
CGTCATGCTCGACTGGGCGGACCGGCTGCCCCCGGCGCTTGATAGGCCCG
GCGAAGCTGCaggctcgggggggggaagcagcctgccctctcttcgcccG
CGTGCGGCCCACCAACTCGTCTGGCTCGACAAGGAGCAGCGGCTCTTGGC
ACTCGCCCAGATggtgatggggatggagaaagTCCGGGCCGAGATGGTCG
AGAAGTCGGCCCCTGGCGAGGGAGCCCGAGGCATCACGACCAGGATGCTC
GCGGCGCGGCTGGGCCTCTCTcccgaggaggcggcggcctttTACAAGCT
GGGTCTCAGGGCGCGGTCTTACATCCTCGTCTCCATGCACTCCCTCATTg
ccgccttggcccgcaAGTACGGAGCCACGTtcggggtggacgaggcagag
ctAGTGCAGGAGGGGTACAGGGGCGCGATGCAAGCGCTGGAGCGGTACGA
CCGGGGCAAGGCCGAGGCGACCGGGGCCACCTTCCGTGCCTTCTCCTACT
TCTATGTCATGTCCGCCATGATCACGGCGGCACGGAAAGAACTCCATCTT
GATGCGACCCCCTCGTCGACACGAAATGCCGCTTCGATGCGGCTGCCACC
GGGCACGCAAGGGCGGGGCGACGcgagcttcctcctgcctgccGGGACCG
CCGGGGCATTGCCGGCCGCAGCATCGGGACTAGGAGGCTCTCGGCCTGTG
TCCACGACGGAAATTCCACCTGAGCTTTTATGGAAGGACGTCAAGGCTAa
agaggatgacggggaATGGAAGCACggggccgaggaaggggaggaggagg
accctGAGGAGGCTGCCGAAGCCGCCCTCTACCGAAGGCCACTCCCTCGC
CCGGGACGACGGCCGCGACTTGGGCCGATGCGCCGCGTGACTCGCATGGG
GCCCGCACAGGAGGTAatcgcggaggcggtgggcgcAGGCAAgcaggggg
ccggggccaggggggacTTGGGTGTGGGCGGCCGGCGCGCAGAGCTGTTT
GGTGTGGACCCGGAGACGACTCGGCCCGCTTATGAAATTGTAGACGAGAG
CAAGCGGGCGTGGGAGCTTGGCATGTTCCTGCGCCGAGCTGCCCAGGAGC
TCTCGCCGCAGGACATGGAGGTGTTGTCCTTGCTCTACGGCTTGAAGGGC
CACAGCCCCCTATCTCGCCCGCAAGTGGCGCGGAAGTTGGGCTTGTCGAC
CGCGGTGGTCAGTAAGAGCGAGCGTCGGGCGTTGAAGAAGCTGAGAGAGA
TGCTGAACATTGGCGTTGTCGAGTAG back to top
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