EWM22422.1, cds8242 (CDS) Nannochloropsis gaditana

Overview
NameEWM22422.1
Unique Namecds8242
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:228554..230479 +

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Properties
Property NameValue
Protein idEWM22422.1
Productrna polymerase sigma-e factor
Orig transcript idgnl|cribi|Naga_100011g78.3422.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:228554..230479 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
GO:0006352DNA-templated transcription, initiation
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0016987sigma factor activity
GO:0003700DNA-binding transcription factor activity
Vocabulary: INTERPRO
TermDefinition
IPR013325RNA_pol_sigma_r2
IPR013324RNA_pol_sigma_r3_r4
IPR007630RNA_pol_sigma70_r4
IPR011991WHTH_DNA-bd_dom
IPR007627RNA_pol_sigma70_r2
IPR014284RNA_pol_sigma-70_dom
Homology
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BLAST of EWM22422.1 vs. NCBI_GenBank
Match: gi|585102928|gb|EWM22422.1| (rna polymerase sigma-e factor [Nannochloropsis gaditana])

HSP 1 Score: 1270.37 bits (3286), Expect = 0.000e+0
Identity = 641/641 (100.00%), Postives = 641/641 (100.00%), Query Frame = 0 
Query:    1 MRRRRQRAEERRRSSAPSCTRIRVPAQRVLHKAPLPSHGMFRSLNGPFLYVVLLHMLLPRGAAFVAQLPYQSHVACGSRPWTWTAAGRAWESASHSSLGATRVADETVPWQDEGDHAAVARNITEASAGREARLARKAARRRQRQLRVEGQGGAHEERGNVATRYMLPSPTEAGLRTRDGPRSRLGARGHGESAAPGLTPPSRPHTVDLYVPSADLDVMLDWADRLPPALDRPGEAAGSGGGSSLPSLRPRAAHQLVWLDKEQRLLALAQMVMGMEKVRAEMVEKSAPGEGARGITTRMLAARLGLSPEEAAAFYKLGLRARSYILVSMHSLIAALARKYGATFGVDEAELVQEGYRGAMQALERYDRGKAEATGATFRAFSYFYVMSAMITAARKELHLDATPSSTRNAASMRLPPGTQGRGDASFLLPAGTAGALPAAASGLGGSRPVSTTEIPPELLWKDVKAKEDDGEWKHGAEEGEEEDPEEAAEAALYRRPLPRPGRRPRLGPMRRVTRMGPAQEVIAEAVGAGKQGAGARGDLGVGGRRAELFGVDPETTRPAYEIVDESKRAWELGMFLRRAAQELSPQDMEVLSLLYGLKGHSPLSRPQVARKLGLSTAVVSKSERRALKKLREMLNIGVVE 641
            MRRRRQRAEERRRSSAPSCTRIRVPAQRVLHKAPLPSHGMFRSLNGPFLYVVLLHMLLPRGAAFVAQLPYQSHVACGSRPWTWTAAGRAWESASHSSLGATRVADETVPWQDEGDHAAVARNITEASAGREARLARKAARRRQRQLRVEGQGGAHEERGNVATRYMLPSPTEAGLRTRDGPRSRLGARGHGESAAPGLTPPSRPHTVDLYVPSADLDVMLDWADRLPPALDRPGEAAGSGGGSSLPSLRPRAAHQLVWLDKEQRLLALAQMVMGMEKVRAEMVEKSAPGEGARGITTRMLAARLGLSPEEAAAFYKLGLRARSYILVSMHSLIAALARKYGATFGVDEAELVQEGYRGAMQALERYDRGKAEATGATFRAFSYFYVMSAMITAARKELHLDATPSSTRNAASMRLPPGTQGRGDASFLLPAGTAGALPAAASGLGGSRPVSTTEIPPELLWKDVKAKEDDGEWKHGAEEGEEEDPEEAAEAALYRRPLPRPGRRPRLGPMRRVTRMGPAQEVIAEAVGAGKQGAGARGDLGVGGRRAELFGVDPETTRPAYEIVDESKRAWELGMFLRRAAQELSPQDMEVLSLLYGLKGHSPLSRPQVARKLGLSTAVVSKSERRALKKLREMLNIGVVE
Sbjct:    1 MRRRRQRAEERRRSSAPSCTRIRVPAQRVLHKAPLPSHGMFRSLNGPFLYVVLLHMLLPRGAAFVAQLPYQSHVACGSRPWTWTAAGRAWESASHSSLGATRVADETVPWQDEGDHAAVARNITEASAGREARLARKAARRRQRQLRVEGQGGAHEERGNVATRYMLPSPTEAGLRTRDGPRSRLGARGHGESAAPGLTPPSRPHTVDLYVPSADLDVMLDWADRLPPALDRPGEAAGSGGGSSLPSLRPRAAHQLVWLDKEQRLLALAQMVMGMEKVRAEMVEKSAPGEGARGITTRMLAARLGLSPEEAAAFYKLGLRARSYILVSMHSLIAALARKYGATFGVDEAELVQEGYRGAMQALERYDRGKAEATGATFRAFSYFYVMSAMITAARKELHLDATPSSTRNAASMRLPPGTQGRGDASFLLPAGTAGALPAAASGLGGSRPVSTTEIPPELLWKDVKAKEDDGEWKHGAEEGEEEDPEEAAEAALYRRPLPRPGRRPRLGPMRRVTRMGPAQEVIAEAVGAGKQGAGARGDLGVGGRRAELFGVDPETTRPAYEIVDESKRAWELGMFLRRAAQELSPQDMEVLSLLYGLKGHSPLSRPQVARKLGLSTAVVSKSERRALKKLREMLNIGVVE 641
The following BLAST results are available for this feature:
BLAST of EWM22422.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585102928|gb|EWM22422.1|0.000e+0100.00rna polymerase sigma-e factor [Nannochloropsis gad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8266rna8266Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications