rna8265, rna8265 (mRNA) Nannochloropsis gaditana

Overview
Namerna8265
Unique Namerna8265
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2765
Alignment locationKK037248.1:226700..228149 -

Link to JBrowse

Properties
Property NameValue
ProductTranslation protein SH3
Orig transcript idgnl|cribi|Naga_100011g77.3436.mrna
Orig protein idgnl|cribi|Naga_100011g77.3436
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:226700..228149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100011g77gene8005Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8265rna8265-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22436.1cds8241Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8265 ID=rna8265|Name=rna8265|organism=Nannochloropsis gaditana|type=mRNA|length=2765bp
ACGCAGTATCTCCCTTGTACTGATTCTGAAGACAGGCAACGTCATTCAAC
AACGCATTTTTTCTTCTCATTATATTTTTTGTTGAAAAACAGCACATGCG
TGGCTATCTCCATCCCAAACAAGGCTGCTCAAGCTCTGTGAAAGACGCCA
TCCCATCCATCCCAGGAGTATCAGAGCACGACCATGGCAACCTCCCCACC
CAGTGCCCCAACTGCCTTCACCCTCTTTCGTGCCTTTCCGATCACGGAGG
GATGGCTGCACGACGTTTATATGGCCATTGAATCAGTGAATGTTCTGGGT
TGCGGCGTGTATGGGTATGTGACTCTCCAGCTTGCTGCAACGCATGAGGA
AGGCTGCTCACTGGTCTTTCCGGCACGAGTCGTCCCTAGGAGGGGCGTGC
AACAAGACCACGTCCTGATGGCTGAGACAGCAATGGTACTTTTAGATATT
CAGATAGGTAGTAGCGTTAAAATAGTGGTGTGCGGAGTGGGAAAAGGCTC
AGGCGCCCCTCTCCAGCTGATTCCTTTCTTTGAGGACTCGCCGCAGCTCC
CTTGGACCCTTGTTGAAAGGTCTACGCGCAGATTGAAATCTCCTGGCGAT
GCAGAGAGTCTCGTCTTGATACGCTACTTGAATTTGATTCATCCGTACCG
CACGACCAAGACAGGCAAAAGAGACAAAGGGGAGGTGACCGAGAGGATGA
GGAATGGGTTGCGCTCCGTGGACGGAGCGGAGGAACGCGGAGAGGACCGT
GCGAGAGGGAGCGAGGAGGATCTGCAATCCAGAAAGTGCAAGCGTCTGGA
AGAGTTCCACATAGCAGCACTCCAGCAGATCTTGGAGGTTGTGGCACAAA
ACCAGAGCAGGCGTGACGCTTTCAGGATTGGAGGCCTGCTCCTCTCTGCC
CCGAAGGGGGGAGGGAAGACTGTTTTCGCGCAGAGACTCCGGCAGCTGCT
CCAGCCAAGAGTAAAAATGATTTACATGACGGGTCAGGATGTACTGGGGG
CGTTAATGGCCTCAGAAAGCGGCGCATGGGAAGGAGGAGTGTGGACAAGT
AATGGGGGAATAGGAGGGGAGGAAGAGGTGCACTTGCGGGAAAGGCTGGG
CCTTGGAGAGGGAGATGACGCACAAGATGTGGTTCTGTTCATCGACGACT
TCGATGAGCTGCTTTCGGGGAGAGAGGCGGGGATCTCGCAGGAGGACGCG
AAGGGTGCGAGCGGTCCGGATGTGGACGGGAGACAGGGGGGAATCGGCGA
GCAAAGCCGTGGTTTGAGACGGCTGCAAGAGCTGCTGGGACGGTCTTCAG
AGCGAGGCCGCCTTCTTTGCTGGGTATTGGCGACACGGGAGCGAGTCCGC
GGTGAGGGAGGCAGCGGGATGGGCGGTGCGCCAGGGTGCCTGATGCGGCT
CCAGGGGTCTCTCTTTGACAGGGTCCTGATGCTGCCGGCGCCCGACCTAC
GCGGGCGCGAGGCCATCCTCCACGTCCTGGTCCCTCGATTGGCCCCCGAG
CTGTTGGAGGGTCTACCGGAGGGCGAGGGCGAGGGGCAGGGCAGGAATCG
ACTCCTACAGCGCGTGGGGGGGATGACGGCGGGGTTCCTCCCGGGGGACC
TTGTCGCGCTCACGCGGGTGGCCGCACTGCACGCGCAGATGGGGTCTGCG
ACAGGGCCCGATGCTTGCGAAGGAGAGGGTGGACCCGTGGACCCGTCGCA
GGCGTTGGCGAGGACGTTGTCGGCCTTCGGTGCCGCGCGTGGACGCGTCT
CGGTCGCGGGGTGGCAGGGCCTGGCCGGAGGGGGCGAAGCATTAGGGGCC
AAGTGGACAGACGTGGGGGGATATGAGGAGGTTAAAGCCCGCCTGAAGAG
GCTCGTGGAGTGGCCCTTGCGCTATCCTGACACCTTCGCACGCCTGGGCT
TGCGGGAGCGTCCCCCCCCTCCACCCTCCTCCCCTTCCTTTCTCTCTTTC
CCCGCCTCACCCGGACCCTCGCCCTCCTCGTCCCCATTTGCAACGGGCGG
CATCCTCCTGCACGGCCCCAGCGGCTGTGGCAAGAGCCTCCTGGCGCGCG
TCATCGCGGCGGAAGTGGGCGCCAACTTTGTGGAGCTTCCGGCCTCCGAG
GTGTTTTCTCCTTATCTCGGCGACAGCGAGGCCCGGGTCCGCGATGCTTT
TGCACGGGCCCGCCGAATGACACCTTGTATCCTGTTTTTGGACGAACTGG
ACGCTATGGCGGAGGGTCGCGGCATGGGCGGTGAGGGCGAAGGAGGGCCA
GGGAGTGGGGGAGTCTATGCGCGCGTGCTCTCTACGCTTCTCAACGAGAT
GGACGGCGTCTCAGGACAGCAAGAGGGCCTGCTGGTCCTAGCAGCGACCA
ACCGCCGCGACGCAGTGGACGAAGCGCTTCTGAGGCCGGGCCGGCTGCAA
GAGTCGGTGCTCGTCACCTTTCCGCGACCCGACCTCGATTTCCTGTCCAT
TTTGGAGGTCGCCACCCGGCGCACGCCCCTGCATGCTGACGTAAATTTGG
ACGAGCTAGTGACACAGGTTTTGAAGCCTCATGCACTTTCAGCAAAAGGA
GGCGGGGCAGCCAGGGGCCAAATAACGCCTGCGGTTCTGGTGGCTTTGTG
CCGTGAAGCAGCACTGGCTAGCTTGCGCGAGACGGGTGACATGGAGCAGG
CAGGGGCTAATCTCCACGACGCGGAAGTTGTCGTGCGACAAAAGCACTTC
ATGACGGCGGCAGCCAAAATATTCTCAAAGTAAACGGGATAAAGAACGAA
ATCGCGTAAGGTGCG
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protein sequence of rna8265

>rna8265-protein ID=rna8265-protein|Name=rna8265|organism=Nannochloropsis gaditana|type=polypeptide|length=153bp
MAFVHRHKMKYSPNVSSSRRKSRKAHFTAPSHIRRKLMTAPLSKELQAKY
KVRSMPIRKSDEVQVVRGVFKNREGKVTAVYRKKFVIHIDRITREKANGA
TVNVGIDASKVHITKLKMNKARKEILERKARTGAAGKGKVTEAEVGSNMG
GVD
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mRNA from alignment at KK037248.1:226700..228149-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8265 ID=rna8265|Name=rna8265|organism=Nannochloropsis gaditana|type=mRNA|length=1450bp|location=Sequence derived from alignment at KK037248.1:226700..228149- (Nannochloropsis gaditana)
GGACATTTGATGCACGATGCCTTAGAGGTGGTGCGTGGCAACTGTGTGGT
GTACGGTACTTGTCGCGAGGGGAGTGCCTCACTACGGCATAGCGGGTGGT
GGGGAGGCCTCGCTTTCTTCTTAGGCTTTCGCGGCCCGGCCTGTGTTCGT
CTGACCACTTGGACGGAGACCAGGGCTACGAGATGCTGGATCGGGTTGTT
CATTATGCACGGCAGCATTGATGAGTCTTGCAAAGCCGGGCATGGAGCTC
AATTTTCGAGAACTTGATGTCGTGGGGGGGGGTTAAAGCCACTCCACACC
GTCGTTTCCTCGCTCCTCATTCCCTTCCTTCCTCCCTTCGATGGCTTTCG
TCCACAGGCACAAAATGAAGTACAGCCCAAACGTCTCCTCTTCGCGGCGT
AAGAGTCGTAAGGCTCACTTTACTGCGCCGTCGCACATCCGACGGAAGCT
CATGACTGCGCCTTTGTCGAAGGAGCTGCAGGCGAAGTACAAGGTAGGTG
ATGGGGCATTGAGCTCACACACTTAGCCATGAATGACAGAGAGCATCAAA
AATGCTTGCAGACTTCGATAGCCTCCAAGCTATGATAGAGGGGCGCTTCG
GCGCTCAATATGTTAGGAATGTCGGCTTCACGTCGTAGCGCGCCCTTTGT
GAACTGATGTTTGCGCAGGAGAAGTTGAATGCCAGACTACCAGATCTCAC
TTCATTTTTTAGGCACGAATGCGCCCACTTGTTCGATGGTTATCAGTGTG
AGGCGCAATTTAAGGAGCCTTCTGTGGAGTCATGAGCTGAGTACACCTCT
CACCTCTCCCCTTTTATTAATCTCGACCACAGGTGCGATCAATGCCTATC
CGGAAGAGTGACGAGGTGCAAGTGGTGCGTGGAGTCTTCAAGAACCGTGA
AGGGAAAGTGACAGCGGTATACCGGAAGAAATTTGTAATCCACATCGATC
GCATCACCCGGGAGAAGGCGAACGGGGCGACTGTTAACGTGGGCATCGAC
GCGTCCAAGGTGCATATCACCAAGCTGAAGATGAACAAAGCACGCAAGGA
GATTTTGGAGCGCAAGGCACGCACTGGAGCCGCGGGGAAGGGGAAGGTAA
CGGAGGCCGAAGTTGGATCTAACATGGGTGGCGTCGATTAGAGTTGAGAG
GCACAAGGAAAGGATGAGTCATTCCTTGCGCTCTCCCTGCCATAGCTACG
GCAGCGATGAGATTTGTAGAGAAGAAGGCTCCTATTTTTTGACAGTCATG
ATATCTCTGATAACGTGTGGGGTGACGGTGAGAGCAAAGGAATTGTTTGT
TTTTCATTCTCTTTTTCCAGCGCGAAACTCACTCAGCGAAGAATGACGTG
AAGAATAAAATGATTGTCGGGAAACGACGTACTTCGTTTCAAGTTATCAG
TTGTTGCGCGCGCACAATACTAGATGGGCGCCTGGCAGAAATTTCCAACA
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Coding sequence (CDS) from alignment at KK037248.1:226700..228149-

>rna8265 ID=rna8265|Name=rna8265|organism=Nannochloropsis gaditana|type=CDS|length=924bp|location=Sequence derived from alignment at KK037248.1:226700..228149- (Nannochloropsis gaditana)
GTGCGATCAATGCCTATCCGGAAGAGTGACGAGGTGCAAGTGGTGCGTGG
AGTCTTCAAGAACCGTGAAGGGAAAGTGACAGCGGTATACCGGAAGAAAT
TTGTAATCCACATCGATCGCATCACCCGGGAGAAGGCGAACGGGGCGACT
GTTAACGTGGGCATCGACGCGTCCAAGGTGCATATCACCAAGCTGAAGAT
GAACAAAGCACGCAAGGAGATTTTGGAGCGCAAGGCACGCACTGGAGCCG
CGGGGAAGGGGAAGGTAACGGAGGCCGAAGTTGGATCTAACATGGGTGGC
GTCGATTAGATGGCTTTCGTCCACAGGCACAAAATGAAGTACAGCCCAAA
CGTCTCCTCTTCGCGGCGTAAGAGTCGTAAGGCTCACTTTACTGCGCCGT
CGCACATCCGACGGAAGCTCATGACTGCGCCTTTGTCGAAGGAGCTGCAG
GCGAAGTACAAGGTGCGATCAATGCCTATCCGGAAGAGTGACGAGGTGCA
AGTGGTGCGTGGAGTCTTCAAGAACCGTGAAGGGAAAGTGACAGCGGTAT
ACCGGAAGAAATTTGTAATCCACATCGATCGCATCACCCGGGAGAAGGCG
AACGGGGCGACTGTTAACGTGGGCATCGACGCGTCCAAGGTGCATATCAC
CAAGCTGAAGATGAACAAAGCACGCAAGGAGATTTTGGAGCGCAAGGCAC
GCACTGGAGCCGCGGGGAAGGGGAAGGTAACGGAGGCCGAAGTTGGATCT
AACATGGGTGGCGTCGATTAGATGGCTTTCGTCCACAGGCACAAAATGAA
GTACAGCCCAAACGTCTCCTCTTCGCGGCGTAAGAGTCGTAAGGCTCACT
TTACTGCGCCGTCGCACATCCGACGGAAGCTCATGACTGCGCCTTTGTCG
AAGGAGCTGCAGGCGAAGTACAAG
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Synonyms
Publications