EWM22436.1, cds8241 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22436.1 vs. NCBI_GenBank
Match: gi|585102942|gb|EWM22436.1| (Translation protein SH3 [Nannochloropsis gaditana]) HSP 1 Score: 308.145 bits (788), Expect = 4.487e-106 Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0
Query: 1 MAFVHRHKMKYSPNVSSSRRKSRKAHFTAPSHIRRKLMTAPLSKELQAKYKVRSMPIRKSDEVQVVRGVFKNREGKVTAVYRKKFVIHIDRITREKANGATVNVGIDASKVHITKLKMNKARKEILERKARTGAAGKGKVTEAEVGSNMGGVD 153
MAFVHRHKMKYSPNVSSSRRKSRKAHFTAPSHIRRKLMTAPLSKELQAKYKVRSMPIRKSDEVQVVRGVFKNREGKVTAVYRKKFVIHIDRITREKANGATVNVGIDASKVHITKLKMNKARKEILERKARTGAAGKGKVTEAEVGSNMGGVD
Sbjct: 1 MAFVHRHKMKYSPNVSSSRRKSRKAHFTAPSHIRRKLMTAPLSKELQAKYKVRSMPIRKSDEVQVVRGVFKNREGKVTAVYRKKFVIHIDRITREKANGATVNVGIDASKVHITKLKMNKARKEILERKARTGAAGKGKVTEAEVGSNMGGVD 153
BLAST of EWM22436.1 vs. NCBI_GenBank
Match: gi|1179518162|ref|XP_020680842.1| (60S ribosomal protein L26-2-like [Dendrobium catenatum]) HSP 1 Score: 196.823 bits (499), Expect = 4.191e-62 Identity = 98/141 (69.50%), Postives = 116/141 (82.27%), Query Frame = 0
Query: 9 MKYSPNVSSSRRKSRKAHFTAPSHIRRKLMTAPLSKELQAKYKVRSMPIRKSDEVQVVRGVFKNREGKVTAVYRKKFVIHIDRITREKANGATVNVGIDASKVHITKLKMNKARKEILERKARTGAA--GKGKVTEAEVGS 147
MK++P VSSSRRK RKAHFTAPS +RRKLM+APLS +L+ KY VRSMP+RK DEVQVVRG +K REGK+ VYRKK+VIHI+RITREK NG+TVNVGID SKV ITKLK++K RK +L+RKAR AA KGK + EV +
Sbjct: 1 MKFNPRVSSSRRKCRKAHFTAPSSVRRKLMSAPLSSDLRGKYSVRSMPVRKDDEVQVVRGTYKGREGKIVQVYRKKWVIHIERITREKVNGSTVNVGIDPSKVVITKLKLDKDRKSLLDRKARGRAADKAKGKFSAEEVAA 141
BLAST of EWM22436.1 vs. NCBI_GenBank
Match: gi|159462890|ref|XP_001689675.1| (ribosomal protein L26, component of cytosolic 80S ribosome and 60S large subunit [Chlamydomonas reinhardtii] >gi|158283663|gb|EDP09413.1| ribosomal protein L26 [Chlamydomonas reinhardtii]) HSP 1 Score: 194.512 bits (493), Expect = 3.117e-61 Identity = 101/147 (68.71%), Postives = 118/147 (80.27%), Query Frame = 0
Query: 9 MKYSPNVSSSRRKSRKAHFTAPSHIRRKLMTAPLSKELQAKYKVRSMPIRKSDEVQVVRGVFKNREGKVTAVYRKKFVIHIDRITREKANGATVNVGIDASKVHITKLKMNKARKEILERK--ARTGAAGKGKVTEAEVGSNMGGVD 153
MKY+ NVSSSRRKSRKAHF+APS++RRKLMTAPLS EL+ KY VR++PIRK DEVQV RG FK REGKV VYRKK+VIHI+R++++K NGA VNVGID SKV ITKLK++K RK +LERK AR GKGK TE +V M VD
Sbjct: 1 MKYNRNVSSSRRKSRKAHFSAPSNVRRKLMTAPLSAELKNKYGVRAVPIRKDDEVQVTRGAFKAREGKVVEVYRKKWVIHIERVSKDKKNGAVVNVGIDPSKVVITKLKLDKDRKALLERKKVARAAEKGKGKFTEQDVA--MTNVD 145
BLAST of EWM22436.1 vs. NCBI_GenBank
Match: gi|586734125|ref|XP_006850075.1| (60S ribosomal protein L26-1 [Amborella trichopoda] >gi|1173122042|ref|XP_020526429.1| 60S ribosomal protein L26-1 [Amborella trichopoda] >gi|1173122044|ref|XP_020526430.1| 60S ribosomal protein L26-1 [Amborella trichopoda] >gi|548853673|gb|ERN11656.1| hypothetical protein AMTR_s00022p00214810 [Amborella trichopoda]) HSP 1 Score: 194.126 bits (492), Expect = 4.278e-61 Identity = 97/147 (65.99%), Postives = 118/147 (80.27%), Query Frame = 0
Query: 9 MKYSPNVSSSRRKSRKAHFTAPSHIRRKLMTAPLSKELQAKYKVRSMPIRKSDEVQVVRGVFKNREGKVTAVYRKKFVIHIDRITREKANGATVNVGIDASKVHITKLKMNKARKEILERKARTGAA--GKGKVTEAEVGSNMGGVD 153
MKY+P V+SSRRK RKAHF APS + R LM+APLS EL+ KY VRS+P+RK DEVQVVRG FK REGK+ VYRKK+VIHI+RITREK NG+TVNVGI+ SKV +TKLK++K RK +LERK + AA GKGK T +V +++ GVD
Sbjct: 1 MKYNPRVTSSRRKCRKAHFKAPSSVIRVLMSAPLSPELRNKYNVRSVPVRKDDEVQVVRGTFKGREGKIVLVYRKKWVIHIERITREKVNGSTVNVGINPSKVMVTKLKLDKDRKSLLERKGKGRAAEKGKGKFTAEDVATSLQGVD 147
BLAST of EWM22436.1 vs. NCBI_GenBank
Match: gi|1208528668|gb|OWM82102.1| (hypothetical protein CDL15_Pgr001676 [Punica granatum]) HSP 1 Score: 194.126 bits (492), Expect = 4.989e-61 Identity = 99/146 (67.81%), Postives = 117/146 (80.14%), Query Frame = 0
Query: 9 MKYSPNVSSSRRKSRKAHFTAPSHIRRKLMTAPLSKELQAKYKVRSMPIRKSDEVQVVRGVFKNREGKVTAVYRKKFVIHIDRITREKANGATVNVGIDASKVHITKLKMNKARKEILERKAR-TGAAGKGKVTEAEVGSNMGGVD 153
MKY+P VSSSRRK+RKAHFTAPS +RR LM+APLS +L++KY VRSMP+RK DEVQVVRG +K REGKV VYRKK+VIHI+RITREK NGATVNVGID SKV ITKL+++K RK +L+RKA+ AA K K T+ M VD
Sbjct: 1 MKYNPRVSSSRRKNRKAHFTAPSSLRRILMSAPLSTDLRSKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGATVNVGIDPSKVLITKLRLDKDRKSLLDRKAKGRAAADKDKGTKFTAEDIMQNVD 146
BLAST of EWM22436.1 vs. NCBI_GenBank
Match: gi|552809783|ref|XP_005843030.1| (hypothetical protein CHLNCDRAFT_141725 [Chlorella variabilis] >gi|307102658|gb|EFN50928.1| hypothetical protein CHLNCDRAFT_141725 [Chlorella variabilis]) HSP 1 Score: 193.741 bits (491), Expect = 6.013e-61 Identity = 100/138 (72.46%), Postives = 113/138 (81.88%), Query Frame = 0
Query: 9 MKYSPNVSSSRRKSRKAHFTAPSHIRRKLMTAPLSKELQAKYKVRSMPIRKSDEVQVVRGVFKNREGKVTAVYRKKFVIHIDRITREKANGATVNVGIDASKVHITKLKMNKARKEILERK-ARTGAAGKGKVTEAEV 145
MK+S VSSSRRK RKAHFTAPS +RRKLM+APLS EL+ KY VRS+PIRK DEV VVRG +K REGKV VYRKK+VIHI+RITREK NGATVNVG+D SKV + KLK++K RK +LERK A G A KGK TEAEV
Sbjct: 1 MKFSSTVSSSRRKCRKAHFTAPSSLRRKLMSAPLSPELRNKYGVRSVPIRKDDEVTVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGATVNVGVDPSKVVVNKLKLDKDRKALLERKRAGKGLADKGKFTEAEV 138
BLAST of EWM22436.1 vs. NCBI_GenBank
Match: gi|901824852|gb|KMZ75263.1| (60S ribosomal protein L26-2 [Zostera marina]) HSP 1 Score: 192.971 bits (489), Expect = 1.263e-60 Identity = 97/141 (68.79%), Postives = 116/141 (82.27%), Query Frame = 0
Query: 9 MKYSPNVSSSRRKSRKAHFTAPSHIRRKLMTAPLSKELQAKYKVRSMPIRKSDEVQVVRGVFKNREGKVTAVYRKKFVIHIDRITREKANGATVNVGIDASKVHITKLKMNKARKEILERKARTGAA--GKGKVTEAEVGS 147
MKY+P +SSRRK+RKAHFTAPS +RR LM++PLS +L+ KY VRS+P+RK DEVQVVRG FK REGKV VYRKK+VIHI+R+TREK NG+TVNVGIDASKV ITKLK++K RK +L+RKA+ AA KGK T EV S
Sbjct: 1 MKYNPRCTSSRRKNRKAHFTAPSSVRRILMSSPLSVDLRTKYNVRSIPVRKDDEVQVVRGTFKGREGKVVQVYRKKWVIHIERVTREKVNGSTVNVGIDASKVIITKLKLDKDRKALLDRKAKGRAADKAKGKFTADEVAS 141
BLAST of EWM22436.1 vs. NCBI_GenBank
Match: gi|926781368|ref|XP_013899158.1| (60S ribosomal protein L26-1 [Monoraphidium neglectum] >gi|761969052|gb|KIZ00139.1| 60S ribosomal protein L26-1 [Monoraphidium neglectum]) HSP 1 Score: 192.586 bits (488), Expect = 1.594e-60 Identity = 99/144 (68.75%), Postives = 118/144 (81.94%), Query Frame = 0
Query: 10 KYSPNVSSSRRKSRKAHFTAPSHIRRKLMTAPLSKELQAKYKVRSMPIRKSDEVQVVRGVFKNREGKVTAVYRKKFVIHIDRITREKANGATVNVGIDASKVHITKLKMNKARKEILERKARTGAAGKGKVTEAEVGSNMGGVD 153
K+S VSSSRRKSRKAHF+APS++RRKLM++PL+ EL+ KY V+++PIRK DEVQVVRG FK REGKVT VYRKK+VIHI+RITREK NGATV+VGID SKV ITKLK++K R+ +LERKA KGK TE EV + M VD
Sbjct: 3 KFSSAVSSSRRKSRKAHFSAPSNVRRKLMSSPLNAELKQKYNVKAVPIRKDDEVQVVRGTFKGREGKVTTVYRKKWVIHIERITREKVNGATVSVGIDPSKVVITKLKLDKDRRALLERKAAGRGGDKGKFTEQEVQA-MQTVD 145
BLAST of EWM22436.1 vs. NCBI_GenBank
Match: gi|976924919|gb|KVI08846.1| (KOW-like protein [Cynara cardunculus var. scolymus]) HSP 1 Score: 192.586 bits (488), Expect = 2.209e-60 Identity = 95/149 (63.76%), Postives = 119/149 (79.87%), Query Frame = 0
Query: 9 MKYSPNVSSSRRKSRKAHFTAPSHIRRKLMTAPLSKELQAKYKVRSMPIRKSDEVQVVRGVFKNREGKVTAVYRKKFVIHIDRITREKANGATVNVGIDASKVHITKLKMNKARKEILERKARTGAAGKGK----VTEAEVGSNMGGVD 153
MKY+P V+SSRRK RKAHFTAPS +RR LM+APLS EL++KY VRS+P+RK DEVQVVRG +K REGKV VYR+K+VIH++RITREK NG TVNVGI+ASKV +TKLK++K RK +LERKA+ AA K K V + G+++ +D
Sbjct: 1 MKYNPRVTSSRRKCRKAHFTAPSSVRRVLMSAPLSTELRSKYNVRSVPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHVERITREKVNGQTVNVGINASKVVVTKLKLDKDRKSLLERKAKGRAADKSKGKFTVDDVAAGASLQEID 149
BLAST of EWM22436.1 vs. NCBI_GenBank
Match: gi|565435385|ref|XP_006281275.1| (hypothetical protein CARUB_v10027323mg [Capsella rubella] >gi|482549979|gb|EOA14173.1| hypothetical protein CARUB_v10027323mg [Capsella rubella]) HSP 1 Score: 192.2 bits (487), Expect = 2.815e-60 Identity = 99/146 (67.81%), Postives = 116/146 (79.45%), Query Frame = 0
Query: 9 MKYSPNVSSSRRKSRKAHFTAPSHIRRKLMTAPLSKELQAKYKVRSMPIRKSDEVQVVRGVFKNREGKVTAVYRKKFVIHIDRITREKANGATVNVGIDASKVHITKLKMNKARKEILERKAR-TGAAGKGKVTEAEVGSNMGGVD 153
MKY+P V+SSRRK+RKAHFTAPS +RR LM++PLSKEL+ K+ VRSMPIRK DEVQVVRG FK REGKV VYR+K+VIHI+RITREK NG TVNVG++AS V ITKL+M+K RK +LERKA AA K K T+ G M VD
Sbjct: 1 MKYNPRVTSSRRKNRKAHFTAPSSVRRVLMSSPLSKELRQKHNVRSMPIRKDDEVQVVRGTFKGREGKVMQVYRRKWVIHIERITREKVNGTTVNVGVNASNVMITKLRMDKDRKSLLERKANGRAAADKEKGTKFTAGDVMENVD 146 The following BLAST results are available for this feature:
BLAST of EWM22436.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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