EWM22436.1, cds8241 (CDS) Nannochloropsis gaditana

Overview
NameEWM22436.1
Unique Namecds8241
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:227657..227809 -
Alignment locationKK037248.1:227009..227317 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22436.1
ProductTranslation protein SH3
Orig transcript idgnl|cribi|Naga_100011g77.3436.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:227657..227809 -
KK037248.1supercontigKK037248.1:227009..227317 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005829cytosol
GO:0015934large ribosomal subunit
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like
IPR005756Ribosomal_L26/L24P_euk/arc
IPR014722Rib_L2_dom2
IPR005824KOW
Homology
BLAST of EWM22436.1 vs. NCBI_GenBank
Match: gi|585102942|gb|EWM22436.1| (Translation protein SH3 [Nannochloropsis gaditana])

HSP 1 Score: 308.145 bits (788), Expect = 4.487e-106
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0
Query:    1 MAFVHRHKMKYSPNVSSSRRKSRKAHFTAPSHIRRKLMTAPLSKELQAKYKVRSMPIRKSDEVQVVRGVFKNREGKVTAVYRKKFVIHIDRITREKANGATVNVGIDASKVHITKLKMNKARKEILERKARTGAAGKGKVTEAEVGSNMGGVD 153
            MAFVHRHKMKYSPNVSSSRRKSRKAHFTAPSHIRRKLMTAPLSKELQAKYKVRSMPIRKSDEVQVVRGVFKNREGKVTAVYRKKFVIHIDRITREKANGATVNVGIDASKVHITKLKMNKARKEILERKARTGAAGKGKVTEAEVGSNMGGVD
Sbjct:    1 MAFVHRHKMKYSPNVSSSRRKSRKAHFTAPSHIRRKLMTAPLSKELQAKYKVRSMPIRKSDEVQVVRGVFKNREGKVTAVYRKKFVIHIDRITREKANGATVNVGIDASKVHITKLKMNKARKEILERKARTGAAGKGKVTEAEVGSNMGGVD 153          
BLAST of EWM22436.1 vs. NCBI_GenBank
Match: gi|1179518162|ref|XP_020680842.1| (60S ribosomal protein L26-2-like [Dendrobium catenatum])

HSP 1 Score: 196.823 bits (499), Expect = 4.191e-62
Identity = 98/141 (69.50%), Postives = 116/141 (82.27%), Query Frame = 0
Query:    9 MKYSPNVSSSRRKSRKAHFTAPSHIRRKLMTAPLSKELQAKYKVRSMPIRKSDEVQVVRGVFKNREGKVTAVYRKKFVIHIDRITREKANGATVNVGIDASKVHITKLKMNKARKEILERKARTGAA--GKGKVTEAEVGS 147
            MK++P VSSSRRK RKAHFTAPS +RRKLM+APLS +L+ KY VRSMP+RK DEVQVVRG +K REGK+  VYRKK+VIHI+RITREK NG+TVNVGID SKV ITKLK++K RK +L+RKAR  AA   KGK +  EV +
Sbjct:    1 MKFNPRVSSSRRKCRKAHFTAPSSVRRKLMSAPLSSDLRGKYSVRSMPVRKDDEVQVVRGTYKGREGKIVQVYRKKWVIHIERITREKVNGSTVNVGIDPSKVVITKLKLDKDRKSLLDRKARGRAADKAKGKFSAEEVAA 141          
BLAST of EWM22436.1 vs. NCBI_GenBank
Match: gi|159462890|ref|XP_001689675.1| (ribosomal protein L26, component of cytosolic 80S ribosome and 60S large subunit [Chlamydomonas reinhardtii] >gi|158283663|gb|EDP09413.1| ribosomal protein L26 [Chlamydomonas reinhardtii])

HSP 1 Score: 194.512 bits (493), Expect = 3.117e-61
Identity = 101/147 (68.71%), Postives = 118/147 (80.27%), Query Frame = 0
Query:    9 MKYSPNVSSSRRKSRKAHFTAPSHIRRKLMTAPLSKELQAKYKVRSMPIRKSDEVQVVRGVFKNREGKVTAVYRKKFVIHIDRITREKANGATVNVGIDASKVHITKLKMNKARKEILERK--ARTGAAGKGKVTEAEVGSNMGGVD 153
            MKY+ NVSSSRRKSRKAHF+APS++RRKLMTAPLS EL+ KY VR++PIRK DEVQV RG FK REGKV  VYRKK+VIHI+R++++K NGA VNVGID SKV ITKLK++K RK +LERK  AR    GKGK TE +V   M  VD
Sbjct:    1 MKYNRNVSSSRRKSRKAHFSAPSNVRRKLMTAPLSAELKNKYGVRAVPIRKDDEVQVTRGAFKAREGKVVEVYRKKWVIHIERVSKDKKNGAVVNVGIDPSKVVITKLKLDKDRKALLERKKVARAAEKGKGKFTEQDVA--MTNVD 145          
BLAST of EWM22436.1 vs. NCBI_GenBank
Match: gi|586734125|ref|XP_006850075.1| (60S ribosomal protein L26-1 [Amborella trichopoda] >gi|1173122042|ref|XP_020526429.1| 60S ribosomal protein L26-1 [Amborella trichopoda] >gi|1173122044|ref|XP_020526430.1| 60S ribosomal protein L26-1 [Amborella trichopoda] >gi|548853673|gb|ERN11656.1| hypothetical protein AMTR_s00022p00214810 [Amborella trichopoda])

HSP 1 Score: 194.126 bits (492), Expect = 4.278e-61
Identity = 97/147 (65.99%), Postives = 118/147 (80.27%), Query Frame = 0
Query:    9 MKYSPNVSSSRRKSRKAHFTAPSHIRRKLMTAPLSKELQAKYKVRSMPIRKSDEVQVVRGVFKNREGKVTAVYRKKFVIHIDRITREKANGATVNVGIDASKVHITKLKMNKARKEILERKARTGAA--GKGKVTEAEVGSNMGGVD 153
            MKY+P V+SSRRK RKAHF APS + R LM+APLS EL+ KY VRS+P+RK DEVQVVRG FK REGK+  VYRKK+VIHI+RITREK NG+TVNVGI+ SKV +TKLK++K RK +LERK +  AA  GKGK T  +V +++ GVD
Sbjct:    1 MKYNPRVTSSRRKCRKAHFKAPSSVIRVLMSAPLSPELRNKYNVRSVPVRKDDEVQVVRGTFKGREGKIVLVYRKKWVIHIERITREKVNGSTVNVGINPSKVMVTKLKLDKDRKSLLERKGKGRAAEKGKGKFTAEDVATSLQGVD 147          
BLAST of EWM22436.1 vs. NCBI_GenBank
Match: gi|1208528668|gb|OWM82102.1| (hypothetical protein CDL15_Pgr001676 [Punica granatum])

HSP 1 Score: 194.126 bits (492), Expect = 4.989e-61
Identity = 99/146 (67.81%), Postives = 117/146 (80.14%), Query Frame = 0
Query:    9 MKYSPNVSSSRRKSRKAHFTAPSHIRRKLMTAPLSKELQAKYKVRSMPIRKSDEVQVVRGVFKNREGKVTAVYRKKFVIHIDRITREKANGATVNVGIDASKVHITKLKMNKARKEILERKAR-TGAAGKGKVTEAEVGSNMGGVD 153
            MKY+P VSSSRRK+RKAHFTAPS +RR LM+APLS +L++KY VRSMP+RK DEVQVVRG +K REGKV  VYRKK+VIHI+RITREK NGATVNVGID SKV ITKL+++K RK +L+RKA+   AA K K T+      M  VD
Sbjct:    1 MKYNPRVSSSRRKNRKAHFTAPSSLRRILMSAPLSTDLRSKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGATVNVGIDPSKVLITKLRLDKDRKSLLDRKAKGRAAADKDKGTKFTAEDIMQNVD 146          
BLAST of EWM22436.1 vs. NCBI_GenBank
Match: gi|552809783|ref|XP_005843030.1| (hypothetical protein CHLNCDRAFT_141725 [Chlorella variabilis] >gi|307102658|gb|EFN50928.1| hypothetical protein CHLNCDRAFT_141725 [Chlorella variabilis])

HSP 1 Score: 193.741 bits (491), Expect = 6.013e-61
Identity = 100/138 (72.46%), Postives = 113/138 (81.88%), Query Frame = 0
Query:    9 MKYSPNVSSSRRKSRKAHFTAPSHIRRKLMTAPLSKELQAKYKVRSMPIRKSDEVQVVRGVFKNREGKVTAVYRKKFVIHIDRITREKANGATVNVGIDASKVHITKLKMNKARKEILERK-ARTGAAGKGKVTEAEV 145
            MK+S  VSSSRRK RKAHFTAPS +RRKLM+APLS EL+ KY VRS+PIRK DEV VVRG +K REGKV  VYRKK+VIHI+RITREK NGATVNVG+D SKV + KLK++K RK +LERK A  G A KGK TEAEV
Sbjct:    1 MKFSSTVSSSRRKCRKAHFTAPSSLRRKLMSAPLSPELRNKYGVRSVPIRKDDEVTVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGATVNVGVDPSKVVVNKLKLDKDRKALLERKRAGKGLADKGKFTEAEV 138          
BLAST of EWM22436.1 vs. NCBI_GenBank
Match: gi|901824852|gb|KMZ75263.1| (60S ribosomal protein L26-2 [Zostera marina])

HSP 1 Score: 192.971 bits (489), Expect = 1.263e-60
Identity = 97/141 (68.79%), Postives = 116/141 (82.27%), Query Frame = 0
Query:    9 MKYSPNVSSSRRKSRKAHFTAPSHIRRKLMTAPLSKELQAKYKVRSMPIRKSDEVQVVRGVFKNREGKVTAVYRKKFVIHIDRITREKANGATVNVGIDASKVHITKLKMNKARKEILERKARTGAA--GKGKVTEAEVGS 147
            MKY+P  +SSRRK+RKAHFTAPS +RR LM++PLS +L+ KY VRS+P+RK DEVQVVRG FK REGKV  VYRKK+VIHI+R+TREK NG+TVNVGIDASKV ITKLK++K RK +L+RKA+  AA   KGK T  EV S
Sbjct:    1 MKYNPRCTSSRRKNRKAHFTAPSSVRRILMSSPLSVDLRTKYNVRSIPVRKDDEVQVVRGTFKGREGKVVQVYRKKWVIHIERVTREKVNGSTVNVGIDASKVIITKLKLDKDRKALLDRKAKGRAADKAKGKFTADEVAS 141          
BLAST of EWM22436.1 vs. NCBI_GenBank
Match: gi|926781368|ref|XP_013899158.1| (60S ribosomal protein L26-1 [Monoraphidium neglectum] >gi|761969052|gb|KIZ00139.1| 60S ribosomal protein L26-1 [Monoraphidium neglectum])

HSP 1 Score: 192.586 bits (488), Expect = 1.594e-60
Identity = 99/144 (68.75%), Postives = 118/144 (81.94%), Query Frame = 0
Query:   10 KYSPNVSSSRRKSRKAHFTAPSHIRRKLMTAPLSKELQAKYKVRSMPIRKSDEVQVVRGVFKNREGKVTAVYRKKFVIHIDRITREKANGATVNVGIDASKVHITKLKMNKARKEILERKARTGAAGKGKVTEAEVGSNMGGVD 153
            K+S  VSSSRRKSRKAHF+APS++RRKLM++PL+ EL+ KY V+++PIRK DEVQVVRG FK REGKVT VYRKK+VIHI+RITREK NGATV+VGID SKV ITKLK++K R+ +LERKA      KGK TE EV + M  VD
Sbjct:    3 KFSSAVSSSRRKSRKAHFSAPSNVRRKLMSSPLNAELKQKYNVKAVPIRKDDEVQVVRGTFKGREGKVTTVYRKKWVIHIERITREKVNGATVSVGIDPSKVVITKLKLDKDRRALLERKAAGRGGDKGKFTEQEVQA-MQTVD 145          
BLAST of EWM22436.1 vs. NCBI_GenBank
Match: gi|976924919|gb|KVI08846.1| (KOW-like protein [Cynara cardunculus var. scolymus])

HSP 1 Score: 192.586 bits (488), Expect = 2.209e-60
Identity = 95/149 (63.76%), Postives = 119/149 (79.87%), Query Frame = 0
Query:    9 MKYSPNVSSSRRKSRKAHFTAPSHIRRKLMTAPLSKELQAKYKVRSMPIRKSDEVQVVRGVFKNREGKVTAVYRKKFVIHIDRITREKANGATVNVGIDASKVHITKLKMNKARKEILERKARTGAAGKGK----VTEAEVGSNMGGVD 153
            MKY+P V+SSRRK RKAHFTAPS +RR LM+APLS EL++KY VRS+P+RK DEVQVVRG +K REGKV  VYR+K+VIH++RITREK NG TVNVGI+ASKV +TKLK++K RK +LERKA+  AA K K    V +   G+++  +D
Sbjct:    1 MKYNPRVTSSRRKCRKAHFTAPSSVRRVLMSAPLSTELRSKYNVRSVPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHVERITREKVNGQTVNVGINASKVVVTKLKLDKDRKSLLERKAKGRAADKSKGKFTVDDVAAGASLQEID 149          
BLAST of EWM22436.1 vs. NCBI_GenBank
Match: gi|565435385|ref|XP_006281275.1| (hypothetical protein CARUB_v10027323mg [Capsella rubella] >gi|482549979|gb|EOA14173.1| hypothetical protein CARUB_v10027323mg [Capsella rubella])

HSP 1 Score: 192.2 bits (487), Expect = 2.815e-60
Identity = 99/146 (67.81%), Postives = 116/146 (79.45%), Query Frame = 0
Query:    9 MKYSPNVSSSRRKSRKAHFTAPSHIRRKLMTAPLSKELQAKYKVRSMPIRKSDEVQVVRGVFKNREGKVTAVYRKKFVIHIDRITREKANGATVNVGIDASKVHITKLKMNKARKEILERKAR-TGAAGKGKVTEAEVGSNMGGVD 153
            MKY+P V+SSRRK+RKAHFTAPS +RR LM++PLSKEL+ K+ VRSMPIRK DEVQVVRG FK REGKV  VYR+K+VIHI+RITREK NG TVNVG++AS V ITKL+M+K RK +LERKA    AA K K T+   G  M  VD
Sbjct:    1 MKYNPRVTSSRRKNRKAHFTAPSSVRRVLMSSPLSKELRQKHNVRSMPIRKDDEVQVVRGTFKGREGKVMQVYRRKWVIHIERITREKVNGTTVNVGVNASNVMITKLRMDKDRKSLLERKANGRAAADKEKGTKFTAGDVMENVD 146          
The following BLAST results are available for this feature:
BLAST of EWM22436.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102942|gb|EWM22436.1|4.487e-106100.00Translation protein SH3 [Nannochloropsis gaditana][more]
gi|1179518162|ref|XP_020680842.1|4.191e-6269.5060S ribosomal protein L26-2-like [Dendrobium caten... [more]
gi|159462890|ref|XP_001689675.1|3.117e-6168.71ribosomal protein L26, component of cytosolic 80S ... [more]
gi|586734125|ref|XP_006850075.1|4.278e-6165.9960S ribosomal protein L26-1 [Amborella trichopoda]... [more]
gi|1208528668|gb|OWM82102.1|4.989e-6167.81hypothetical protein CDL15_Pgr001676 [Punica grana... [more]
gi|552809783|ref|XP_005843030.1|6.013e-6172.46hypothetical protein CHLNCDRAFT_141725 [Chlorella ... [more]
gi|901824852|gb|KMZ75263.1|1.263e-6068.7960S ribosomal protein L26-2 [Zostera marina][more]
gi|926781368|ref|XP_013899158.1|1.594e-6068.7560S ribosomal protein L26-1 [Monoraphidium neglect... [more]
gi|976924919|gb|KVI08846.1|2.209e-6063.76KOW-like protein [Cynara cardunculus var. scolymus... [more]
gi|565435385|ref|XP_006281275.1|2.815e-6067.81hypothetical protein CARUB_v10027323mg [Capsella r... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8265rna8265Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications