rna8263, rna8263 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8263
Unique Name	rna8263
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2472
Alignment location	KK037248.1:221532..223620 -

Link to JBrowse

Properties


Property Name	Value
Product	SGF29 tudor-like domain protein
Orig transcript id	gnl\|cribi\|Naga_100011g75.3464.mrna
Orig protein id	gnl\|cribi\|Naga_100011g75.3464
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:221532..223620 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100011g75	gene8003	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22464.1	cds8239	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8263	rna8263-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:221532..223620-
coding sequence from alignment at KK037248.1:221532..223620-

mRNA sequence

>rna8263 ID=rna8263|Name=rna8263|organism=Nannochloropsis gaditana|type=mRNA|length=2472bp
CGCCCCTTCTCGAGGCCTTTTGTCGATGCAAGTGGAAAGTTATTGGAACG
AGCGTCTTTTTTCAGCCTCGAATTTGGTGATTCCTTGGTTTGTTGCTTTC
TCAGGGTCAACAGTCGATCGATTTCCTCCGCTCGGGTAAGGTATTTGTTG
GCCGCCCGTTTGATCTGATCGTTGCCAGCCCTATCTTGTTTTACAGCAGC
AAGCAAAAGAGCGACAGCCTCTTGATACAGTGGGAACGCCTCCTCGGCAC
GACCGCATTCGTCGAGCTCGACAGCGCGTTGAGCGACCTGCAATGCGCGT
TGGACGGAGGGATTTGGCAGCGACGACGAGGTCGGCGCCGGAACCGAAGT
CTTCCTTTTCACGCTCCCAAAGACCGAGACACCATGAAAGGATGGTCCGT
CCGACGGCCCGCTCATATTTAATCGTCTTTGCAATTCCGTGCAATATCAA
AAAGATAATGTTGTGGCTACTTTGGCTGGCAAGGTCGGTGTCCTGCGCAC
ATGCCCTCAGCAAAAGTAAAAAAGAGAGAACACGGCCTCAAATTATTTCG
AGGCAGTCCAACAGCTTCCAAATGCTCCTAACGTCCGTGAAATTACAAGG
AAAAAGTTATTATATGAACATGTCGAGAAAAAAGTAGCACGGGCAAAGCG
GTTGCGAGCCGGTAACGCATATCACGTTCAGGCGATCAGAAGCTGTCGCT
GTCGCTCTGCGCCGTGGGACTCACAATATGCACTCAAATATAACATAACA
TTTTGAGGGAGGAAAAGGACTTCCAAAATATTTAATTTACATGTTTGGGG
AGAGCACGTCAAGCAAGGCGGCTTGCGATCCCGCACAGCTTCATTTGGCA
GGCTTGTGCTTCGGATAAGGAGGCCAACCTCCCCCCTCCCTCTGAACTGC
ACTCCACCCACGCACACGCCAATCCCGCCACCCCCGTTTGACCATCACCT
TATAAAAGACAAGTTCAGGAGCTTCGATTTCTTGGAGGCGACGAGGTGCA
TTGAGGGAAGCATTATGGCGTCTGCCACCACATCTGCAGCCTCGGAGATC
GGAATCCTCGTCATTGGAGGCGGTGCCGTCGGGCTCTCTGTAGCAAGAAC
ATTGGCCGAGCGGCAGATTGGTAGGGGCGTCCTACTGGTGGAACGTCATG
CCAAACTAGGCTGGGAATCAAGCTCACACAATAGCGAGGTTATTCATGCC
TCAGTCTACTACCCGCCAGGCTCTCTCAAGGCGCGCCTTTGCCGAAAAGG
AAATGAGATGATGTACGCATTGTGCAAAGCGAAGAGCATACCACATGCAA
ATATTGGCAAACTCCTCGTACCCAAAAATATGGACGAGGTCAGGTTGCTT
CCGCGGGTGCTAGCCACGGCGGTGGGTTCCGGGGGCCAGGGTGTAAGGGT
AGTAAATCGTGACGAGCTTCGGGATCTGGAGCCAAACGTTGAGGCGCCGG
CCGCCATTTATTGTCCCACGTCCGGTATTGTCGACAGTCATGCTTTGGTG
CAGTACTATGAAAGCGATTTTTTGGCGAACGGGGGCGACGTGGCCTTGAA
CGCGGAAGTGGTGGGGCTTCGCAAATACAAGGGCATCCCGGCCTACCAGG
TCGACGTCGAGGAGGTGGACCTGTCGGGGCCCCAGCGCCGCGTAAAGGCC
CGTACCTCGCTCCAAGCCCGCTGTGTCGTGAACTGCGCGGGCCTAGGTAG
TGGCCGTATCTCTGCTTTGGCGGGCATCGACGTGGATGAGGCTCAGTACC
GACTGCACCCGACCAAAGGGGTCTACTTCCGCGTCCACCGGCAGCTCTCC
CTCTACCCAAAGCGCCTGATCTACCCCTTGCCCATCCGGGGATCCGTAGG
CGTGCACACGACCCCGGACCTGTATGGCGGCATGCGCCTAGGGCCCTTGG
AGACCTGGCTGCCGCAGAGGGAATCAGGGAAGGAGGGAAAAGGAGCTGTG
GGGGATTTCAGCCACGCCCGGAACGAGAGCTACTACGGCGCGGCCTCACT
TGACATGTCCGTTTCCGAGGACCTCAAGGCCAAGTTCGTGGACGCGGTGA
AGCCCTTTCTGCCCTTCATCGAGTCCGAGGACATCGCTCCTGAGTCCAGC
GGGATCCATGCCAGGCTGCAGCGCGAGCACGAGGAGGTCATGCGGGACTG
GGTGATCACCCACGAGGCGGCGAGAGGCCTTCCCAACTTTTTCAACTTGG
TCGGCATCGAGTCTCCCGGGCTGACGGCGAGCGCAGCGATCGGGGAGTAC
GTGGCTCATATGGTTCACGCGGAGTCGAAATGATGAGCGGGACGCCGCGC
TTAGGCTAGTAAAAAGGAATTCAAATCTCATGACGGAAACGGGTGGTATG
CAAATGTTTGGCTTCTTTCGAGAACAAGGGACCGAAACAGGCACCGGAGG
CCTCCTGCACAGAAGTGGCACATGGCTTAATTTTGCTCCTGCCCTCGCGT
ACTAGCCTTCCTCCATTTCGCC

protein sequence of rna8263

>rna8263-protein ID=rna8263-protein|Name=rna8263|organism=Nannochloropsis gaditana|type=polypeptide|length=481bp
MEGEQEGIMRGSAGAWNLSAHPVCQGVDDRGDLLPTHVPPVPATNGAPPA
GGDVDTKVPIPTNVGGVLVGGTAENGTPPVHDIATEGPPSASAPTAPATG
LSESIGSSPGSRLGSQTFRKLEPRVLLKYLEHHGLTAKPDASVDELAALV
ARHFSREPVDEEVVLHSFFMSGMQATNVLGKFEKKRKRGSGGVGAHYASH
HYGGGSGYAPAPRKEAGRGLGAGGAAGGGSGAIAKMDEEVAARLPNQMME
DSTAGWILARVIQYAPERDTYQVRDEDDHANVQVLPSANVICLHEENLLD
VQKNDTVLAVFPDTTSFYRAQVTKVPKRAQGGLGPLEVMVKFEDDEDETG
RTPHRRVPARHVLKLSQVGRFEAANGMGRDGEDYGDGGGRKGMRDYKIMI
SHALQKLPNSKGTLKEIFKIIENDFRDELQWKMEGDGKKGPIWKSQVRKL
LVNPRSGFMFINAGGERGSQYYAAGGGSGGY

mRNA from alignment at KK037248.1:221532..223620-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8263 ID=rna8263|Name=rna8263|organism=Nannochloropsis gaditana|type=mRNA|length=2089bp|location=Sequence derived from alignment at KK037248.1:221532..223620- (Nannochloropsis gaditana)
GGTGGTCCGCTTTTGCGAAAAATGGAATTGATGAGCGGCGTGCCTGAGTT
GACCTTGCATATTTGCGTGCGGGGCATGCTGGCATGAATTTAAGACCTGT
TTTTTTGTGGTCGGGGCCGCTACATAGCAGAAGGGGGATGTCTCTCACGA
AAGCAACCTGGAGACAACGGTGCCCCGACCACGCTCTTGGAAGTGGGCAT
CTGTCTTGTCTAATGTACACGTACATTGTCATGGGACGGCACTCACTCTA
TTGGATAGTTGCATAGCATACCCTCCACATTTCTTGCATTGCATCTTGTG
AAAAAAAAATTGGGGCACTGCTGCCAAAGCTTGTTGGAAGAAGAACCTGG
AGAAGTTCGCACCAATTCTTTTCGCGACTTCGCACACATCGCACAGGTAA
AAACGCTTTCTCGGACGATGGAGGGCGAACAAGAGGGTATCATGAGAGGG
TCCGCCGGTGCCTGGAATTTATCTGCTCATCCAGTCTGCCAGGGTGTGGA
CGACCGAGGGGACCTCCTCCCAACACACGTCCCGCCGGTGCCAGCTACAA
ACGGTGCGCCCCCCGCCGGAGGTGATGTAGACACGAAGGTTCCGATTCCC
ACAAATGTTGGCGGCGTTTTAGTTGGAGGTACAGCGGAGAACGGGACGCC
TCCAGTTCACGACATAGCCACGGAGGGACCGCCGTCGGCCTCAGCGCCCA
CAGCGCCTGCGACGGGGCTTTCCGAAAGTATCGGTTCCTCGCCCGGCAGC
CGGCTTGGCTCGCAGACTTTTCGAAAACTGGAGCCACGCGTCCTGCTCAA
GTACCTAGAGCACCACGGTTTGACCGCGAAGCCGGATGCGAGTGTGGATG
AGCTCGCCGCCCTGGTGGCGCGACACTTCTCCCGGGAGCCCGTCGACGAG
GAAGTCGTCCTGCACTCTTTCTTCATGTCGGGAATGCAGGCCACCAATGT
ACTTGGCAAGTTCGAGAAGAAGCGGAAACGGGGTTCGGGCGGTGTAGGGG
CCCACTATGCGTCCCACCACTACGGGGGAGGATCCGGGTATGCGCCGGCG
CCGCGCAAGGAGGCCGGCCGCGGCCTTGGGGCCGGAGGCGCCGCGGGCGG
AGGGAGCGGTGCGATCGCAAAGATGGATGAGGAGGTGGCCGCGCGCTTGC
CGAATCAAATGATGGAGGACAGCACTGCAGGCTGGATCCTTGCTCGCGTC
ATCCAGTACGCGCCCGAGCGGGATACCTACCAGGTACGCGACGAGGACGA
CCACGCGAACGTGCAGGTGCTCCCCTCCGCCAACGTGATATGCCTCCACG
AGGAGAACCTGCTCGATGTGCAGAAGAACGACACCGTCCTGGCGGTCTTC
CCCGACACCACCAGCTTCTACCGCGCCCAGGTCACCAAGGTGCCGAAGCG
CGCGCAGGGGGGCCTGGGGCCGCTGGAGGTGATGGTGAAGTTCGAGGACG
ACGAGGACGAGACAGGCCGGACGCCGCACCGGCGAGTCCCGGCCCGGCAC
GTCCTCAAGCTCTCTCAGGTGGGGAGGTTCGAGGCGGCCAATGGGATGGG
CCGTGACGGGGAGGACTACGGGGACGGGGGGGGGAGGAAGGGCATGAGGG
ACTACAAAATTATGATCTCGCACGCCCTTCAGAAGCTTCCCAACTCCAAG
GGGACCTTGAAAGAGATCTTTAAGATTATCGAGAATGATTTTCGGGACGA
GCTGCAGTGGAAGATGGAGGGGGATGGGAAAAAGGGCCCTATCTGGAAGA
GTCAAGTGAGGAAGCTCCTGGTGAACCCGCGGTCGGGCTTCATGTTCATC
AACGCGGGGGGTGAGCGGGGGTCTCAATACTACGCGGCGGGCGGGGGCAG
CGGAGGCTACTAGGCCTGGTGCGTCGGAAGGAGGAGATGAGGGGAGGGAG
ACGCATGGGGTGGTGGTGGGAAGGTAGAAGTGAGAGGGAAGACCGGCAGG
CGGTCCGGCGAAATGGAGGAAGGCTAGTACGCGAGGGCAGGAGCAAAATT
AAGCCATGTGCCACTTCTGTGCAGGAGGCCTCCGGTGCCTGTTTCGGTCC
CTTGTTCTCGAAAGAAGCCAAACATTTGCATACCACCCG

Coding sequence (CDS) from alignment at KK037248.1:221532..223620-

>rna8263 ID=rna8263|Name=rna8263|organism=Nannochloropsis gaditana|type=CDS|length=1446bp|location=Sequence derived from alignment at KK037248.1:221532..223620- (Nannochloropsis gaditana)
ATGGAGGGCGAACAAGAGGGTATCATGAGAGGGTCCGCCGGTGCCTGGAA
TTTATCTGCTCATCCAGTCTGCCAGGGTGTGGACGACCGAGGGGACCTCC
TCCCAACACACGTCCCGCCGGTGCCAGCTACAAACGGTGCGCCCCCCGCC
GGAGGTGATGTAGACACGAAGGTTCCGATTCCCACAAATGTTGGCGGCGT
TTTAGTTGGAGGTACAGCGGAGAACGGGACGCCTCCAGTTCACGACATAG
CCACGGAGGGACCGCCGTCGGCCTCAGCGCCCACAGCGCCTGCGACGGGG
CTTTCCGAAAGTATCGGTTCCTCGCCCGGCAGCCGGCTTGGCTCGCAGAC
TTTTCGAAAACTGGAGCCACGCGTCCTGCTCAAGTACCTAGAGCACCACG
GTTTGACCGCGAAGCCGGATGCGAGTGTGGATGAGCTCGCCGCCCTGGTG
GCGCGACACTTCTCCCGGGAGCCCGTCGACGAGGAAGTCGTCCTGCACTC
TTTCTTCATGTCGGGAATGCAGGCCACCAATGTACTTGGCAAGTTCGAGA
AGAAGCGGAAACGGGGTTCGGGCGGTGTAGGGGCCCACTATGCGTCCCAC
CACTACGGGGGAGGATCCGGGTATGCGCCGGCGCCGCGCAAGGAGGCCGG
CCGCGGCCTTGGGGCCGGAGGCGCCGCGGGCGGAGGGAGCGGTGCGATCG
CAAAGATGGATGAGGAGGTGGCCGCGCGCTTGCCGAATCAAATGATGGAG
GACAGCACTGCAGGCTGGATCCTTGCTCGCGTCATCCAGTACGCGCCCGA
GCGGGATACCTACCAGGTACGCGACGAGGACGACCACGCGAACGTGCAGG
TGCTCCCCTCCGCCAACGTGATATGCCTCCACGAGGAGAACCTGCTCGAT
GTGCAGAAGAACGACACCGTCCTGGCGGTCTTCCCCGACACCACCAGCTT
CTACCGCGCCCAGGTCACCAAGGTGCCGAAGCGCGCGCAGGGGGGCCTGG
GGCCGCTGGAGGTGATGGTGAAGTTCGAGGACGACGAGGACGAGACAGGC
CGGACGCCGCACCGGCGAGTCCCGGCCCGGCACGTCCTCAAGCTCTCTCA
GGTGGGGAGGTTCGAGGCGGCCAATGGGATGGGCCGTGACGGGGAGGACT
ACGGGGACGGGGGGGGGAGGAAGGGCATGAGGGACTACAAAATTATGATC
TCGCACGCCCTTCAGAAGCTTCCCAACTCCAAGGGGACCTTGAAAGAGAT
CTTTAAGATTATCGAGAATGATTTTCGGGACGAGCTGCAGTGGAAGATGG
AGGGGGATGGGAAAAAGGGCCCTATCTGGAAGAGTCAAGTGAGGAAGCTC
CTGGTGAACCCGCGGTCGGGCTTCATGTTCATCAACGCGGGGGGTGAGCG
GGGGTCTCAATACTACGCGGCGGGCGGGGGCAGCGGAGGCTACTAG

Synonyms

Publications