EWM22464.1, cds8239 (CDS) Nannochloropsis gaditana

Overview
NameEWM22464.1
Unique Namecds8239
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:221758..223203 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22464.1
ProductSGF29 tudor-like domain protein
Orig transcript idgnl|cribi|Naga_100011g75.3464.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:221758..223203 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR010750SGF29_tudor-like_dom
IPR025718SAP30_Sin3-bd
Homology
BLAST of EWM22464.1 vs. NCBI_GenBank
Match: gi|585102970|gb|EWM22464.1| (SGF29 tudor-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 982.63 bits (2539), Expect = 0.000e+0
Identity = 481/481 (100.00%), Postives = 481/481 (100.00%), Query Frame = 0
Query:    1 MEGEQEGIMRGSAGAWNLSAHPVCQGVDDRGDLLPTHVPPVPATNGAPPAGGDVDTKVPIPTNVGGVLVGGTAENGTPPVHDIATEGPPSASAPTAPATGLSESIGSSPGSRLGSQTFRKLEPRVLLKYLEHHGLTAKPDASVDELAALVARHFSREPVDEEVVLHSFFMSGMQATNVLGKFEKKRKRGSGGVGAHYASHHYGGGSGYAPAPRKEAGRGLGAGGAAGGGSGAIAKMDEEVAARLPNQMMEDSTAGWILARVIQYAPERDTYQVRDEDDHANVQVLPSANVICLHEENLLDVQKNDTVLAVFPDTTSFYRAQVTKVPKRAQGGLGPLEVMVKFEDDEDETGRTPHRRVPARHVLKLSQVGRFEAANGMGRDGEDYGDGGGRKGMRDYKIMISHALQKLPNSKGTLKEIFKIIENDFRDELQWKMEGDGKKGPIWKSQVRKLLVNPRSGFMFINAGGERGSQYYAAGGGSGGY 481
            MEGEQEGIMRGSAGAWNLSAHPVCQGVDDRGDLLPTHVPPVPATNGAPPAGGDVDTKVPIPTNVGGVLVGGTAENGTPPVHDIATEGPPSASAPTAPATGLSESIGSSPGSRLGSQTFRKLEPRVLLKYLEHHGLTAKPDASVDELAALVARHFSREPVDEEVVLHSFFMSGMQATNVLGKFEKKRKRGSGGVGAHYASHHYGGGSGYAPAPRKEAGRGLGAGGAAGGGSGAIAKMDEEVAARLPNQMMEDSTAGWILARVIQYAPERDTYQVRDEDDHANVQVLPSANVICLHEENLLDVQKNDTVLAVFPDTTSFYRAQVTKVPKRAQGGLGPLEVMVKFEDDEDETGRTPHRRVPARHVLKLSQVGRFEAANGMGRDGEDYGDGGGRKGMRDYKIMISHALQKLPNSKGTLKEIFKIIENDFRDELQWKMEGDGKKGPIWKSQVRKLLVNPRSGFMFINAGGERGSQYYAAGGGSGGY
Sbjct:    1 MEGEQEGIMRGSAGAWNLSAHPVCQGVDDRGDLLPTHVPPVPATNGAPPAGGDVDTKVPIPTNVGGVLVGGTAENGTPPVHDIATEGPPSASAPTAPATGLSESIGSSPGSRLGSQTFRKLEPRVLLKYLEHHGLTAKPDASVDELAALVARHFSREPVDEEVVLHSFFMSGMQATNVLGKFEKKRKRGSGGVGAHYASHHYGGGSGYAPAPRKEAGRGLGAGGAAGGGSGAIAKMDEEVAARLPNQMMEDSTAGWILARVIQYAPERDTYQVRDEDDHANVQVLPSANVICLHEENLLDVQKNDTVLAVFPDTTSFYRAQVTKVPKRAQGGLGPLEVMVKFEDDEDETGRTPHRRVPARHVLKLSQVGRFEAANGMGRDGEDYGDGGGRKGMRDYKIMISHALQKLPNSKGTLKEIFKIIENDFRDELQWKMEGDGKKGPIWKSQVRKLLVNPRSGFMFINAGGERGSQYYAAGGGSGGY 481          
BLAST of EWM22464.1 vs. NCBI_GenBank
Match: gi|219124229|ref|XP_002182411.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406372|gb|EEC46312.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 139.043 bits (349), Expect = 3.626e-34
Identity = 90/251 (35.86%), Postives = 135/251 (53.78%), Query Frame = 0
Query:  118 FRKLEPRVLLKYLEHHGLTAKPDASVDELAALVARHFSREPVDEEVVLHSFFMSGMQATNVLGKFEKKRKRGSGGVGAHYASHHYGGGSGYAPAPRKEAGRGLGAGGAAGGGSGAIAKMDEEVAARLPNQMMEDSTAGWILARVIQYAPERDTYQVRDEDDHANVQVLPSANVICLHEENLLDVQKNDTVLAVFPDTTSFYRAQVTKVPKRAQGGLGP---LEVMVKFEDDEDETGRTPHRRVPARHVLKL 365
            FRKL    LL Y++HHG+  + +A   ELA  VARHF    VDEE                +G F ++ ++G G       +  + G +   PA +++  +      AAG G        E+VAA++      D    WILA V ++  + +TY V+DEDD + +  LP ++V+ L        +K++  +A+FP+TTSFYRA+++K P      LG     E++VKFEDD+D  GRTPHRRVPAR+V+ +
Sbjct:   37 FRKLAGLTLLSYIDHHGVAVRAEAPPSELAVAVARHFEAMEVDEE--------------ECIGGFLERLEKGPGATEYARQTAFFDGRALALPARKRKRSK-----LAAGPG--------EQVAAKVTRT---DENGSWILASVQRFYTDTETYDVQDEDDTSKLIRLPWSHVMRLSTGAEGCFKKDNDCMAIFPETTSFYRAKISKDPIWKVDRLGEPTVKEIIVKFEDDDDAQGRTPHRRVPARYVIPI 257          
BLAST of EWM22464.1 vs. NCBI_GenBank
Match: gi|1210528498|dbj|GAX12695.1| (SAGA-associated factor 29 [Fistulifera solaris])

HSP 1 Score: 133.65 bits (335), Expect = 4.134e-32
Identity = 90/263 (34.22%), Postives = 134/263 (50.95%), Query Frame = 0
Query:  118 FRKLEPRVLLKYLEHHGLTAKPDASVDELAALVARHFSREPVDEEVVLHSFFMSGMQATNVLGKFEKKRKRGSGGVGAHYASHHYGGGSGYAPAPRKEAGRGLGAGGAAGGGSGAIAKMDEEVAARLPNQMMEDSTAGWILARVIQYAPERDTYQVRDEDDHANVQVLPSANVICLHEENLLDVQKNDTVLAVFPDTTSFYRAQVTKVPKRAQGGLG-PL--EVMVKFEDDEDETGRTPHRRVPARHVLKLSQVGRFEAANGM 377
            FRK+    LL Y++H G+  + DA   ELA  VARHF +  +DEE  +  F     Q T +     K          A +         G+AP+      + L             A+  E+VAA++      D    WILA V ++ P+ +TY V+DEDD + +  LP  +V+ L      +  K+   +A+FP+TTSFYR++V+K P       G P+  E++VKFEDDED  GRTP+RRVPAR+V+ +     +E A+ +
Sbjct:   33 FRKVSGLTLLNYIDHQGVKIRTDAPQGELAVAVARHFEQMEIDEEECIGGFLERLEQPTGITDYMRKT---------AFF--------DGHAPSLEVRKRKRLA------------ARPGEQVAAKVTRT---DENGSWILASVQRFYPDSETYDVQDEDDTSKLIRLPWTHVMRLSNGTEGNFVKDKDCMAIFPETTSFYRSKVSKNPVWVMDRNGIPMVKEIIVKFEDDEDSQGRTPNRRVPARYVIPIPADYFYEEADDV 263          
BLAST of EWM22464.1 vs. NCBI_GenBank
Match: gi|1210517744|dbj|GAX23440.1| (SAGA-associated factor 29 [Fistulifera solaris])

HSP 1 Score: 133.265 bits (334), Expect = 5.543e-32
Identity = 90/263 (34.22%), Postives = 133/263 (50.57%), Query Frame = 0
Query:  118 FRKLEPRVLLKYLEHHGLTAKPDASVDELAALVARHFSREPVDEEVVLHSFFMSGMQATNVLGKFEKKRKRGSGGVGAHYASHHYGGGSGYAPAPRKEAGRGLGAGGAAGGGSGAIAKMDEEVAARLPNQMMEDSTAGWILARVIQYAPERDTYQVRDEDDHANVQVLPSANVICLHEENLLDVQKNDTVLAVFPDTTSFYRAQVTKVPKRAQGGLG-PL--EVMVKFEDDEDETGRTPHRRVPARHVLKLSQVGRFEAANGM 377
            FRK+    LL Y++H G+  + DA   ELA  VARHF +  +DEE  +  F     Q T +     K          A +         G+AP       + L A            +  E+VAA++      D    WILA V ++ P+ +TY V+DEDD + +  LP  +V+ L      +  K+   +A+FP+TTSFYR++V+K P       G P+  E++VKFEDDED  GRTP+RRVPAR+V+ +     +E A+ +
Sbjct:   35 FRKVSGLTLLNYIDHQGVKIRTDAPQGELAVAVARHFEQMEIDEEECIGGFLERLEQPTGITDYIRKT---------AFF--------DGHAPTLEVRKRKRLAA------------RPGEQVAAKVTRT---DENGSWILASVQRFYPDSETYDVQDEDDTSKLIRLPWTHVMRLSNGTEGNFTKDKDCMAIFPETTSFYRSKVSKNPVWVLDRNGIPMVKEIIVKFEDDEDSQGRTPNRRVPARYVIPIPADYFYEEADDV 265          
BLAST of EWM22464.1 vs. NCBI_GenBank
Match: gi|298704800|emb|CBJ48948.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 135.191 bits (339), Expect = 2.009e-30
Identity = 104/290 (35.86%), Postives = 139/290 (47.93%), Query Frame = 0
Query:  215 EAGRGLGAGGAAGGGSGAIAKMDEEVAARLPNQMMEDSTAGWILARVIQYAPERDTYQVRDEDDHANVQVL--PSANVICLHEENLLDVQKNDTVLAVFPDTTSFYRAQVTKVPKRAQGGLGPLEVMVKFEDDEDETGRTPHRRVPARHVLKLSQVGRFEAANGMGRDGE-----------------------DYGDGGG--------RKGMRDYKIMISHALQKLPNSKGTLKEIFKIIENDFRDELQWKMEGDGKKGPIWKSQVRKLLVNPRSGFMFINAGGERGSQY 471
            +AG     G    GG G  AK  E+VA R   +        WILARVI+Y PE   Y+++D+DD   + +L  P + VI L E++   VQK + VLAVFPDTTSFY   + +VPK A G    +EV  KF DD D+TGRTP R +PAR+V+ L + G  E  +   +D E                       D  D  G              Y  MI  AL KLP  +G L  +   IE  F + L W+ E   ++ P WK+ VR+ L +     MF +AG    + Y
Sbjct:  351 DAGVKAPPGKRRKGGVGWRAKNGEQVAVRDDRE----EPGAWILARVIKYVPETHQYELKDDDDKEGIGILTAPRSLVIRL-EDSTKGVQKGERVLAVFPDTTSFYLGTIHRVPKPAPGAERRIEV--KFNDDADDTGRTPGRPLPARYVVPLPE-GFEEDDSKPAQDDEPPQTVGGGGGDGGRGGVDGAVEDDVDDPMGGDEDEDEDDDNEPPYAEMIRTALMKLPGRQGNLATVCAYIEEHFHERLNWRSESSLRRTPAWKASVRRTLAH---HPMFCHAGTPERNVY 629          
BLAST of EWM22464.1 vs. NCBI_GenBank
Match: gi|1072238608|gb|OEU23335.1| (hypothetical protein FRACYDRAFT_178807 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 128.257 bits (321), Expect = 2.577e-29
Identity = 95/283 (33.57%), Postives = 137/283 (48.41%), Query Frame = 0
Query:   84 ATEGPPSASAPTAPATGLSESIGSSPGSRLGSQTFRKLEPRVLLKYLEHHGLTAKPDASVDELAALVARHFSREPVDEEVVLHSFFMSGMQATNVLGKFEKKRKRGSGGVGAHYASHHYGGGSGYAPAPRKEAGRGLGAGGAAGGGSGAIAKMDEEVAARLPNQMMEDSTAGWILARVIQYAPERDTYQVRDEDDHANVQVLPSANVICLHEENLLDVQKNDTVLAVFPDTTSFYRAQVTKVP--KRAQGGLGPLEVMVKFEDDEDE-TGRTPHRRVPARHVL 363
            A+ G  S    T P TG S S     G       FRKL    L+ Y++HHG+  +P+A   ELA  VARHF +  VDEE V+  F     +   V  ++ +K +R S  +                        R      A  G         E+VAA++      D    WILA V ++  + +TY V+DEDD + +  LP ++V+ L         K+   +A+FP+TTSFY+++V K P  K   G     E++V+FEDDED  TG+TP RRVP+R+V+
Sbjct:   46 ASGGSTSTKKKTGPKTGHSRSYPRGVG-----LDFRKLAGLTLVSYIDHHGVKVRPEAPPSELAVAVARHFEQMEVDEEDVIGGFLERLEEGPTVATEYSRKTQRASTRI----------------------VNRKRTKWAARPG---------EQVAAKVTRT---DENGSWILASVQRFYVDTETYDVQDEDDTSKLIRLPWSHVMRLSTGAEGCFVKSADCMAIFPETTSFYKSKVAKSPVWKLDHGVPCVKEIVVQFEDDEDTLTGKTPRRRVPSRYVI 289          
BLAST of EWM22464.1 vs. NCBI_GenBank
Match: gi|298708672|emb|CBJ26159.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 120.168 bits (300), Expect = 3.118e-27
Identity = 94/254 (37.01%), Postives = 129/254 (50.79%), Query Frame = 0
Query:  118 FRKLEPRVLLKYLEHHG--LTAKPDASVDELAALVARHFSREPVDEEVVLHSFF--MSGMQATNVLGKFEKKRKRGSGGVGAHYASHHYGGGSGYAPAPRKEAGRGLGAGGA---AGGGSGAIAKMDEEVAARLPNQMMEDSTAGWILARVIQYAPERDTYQVRDEDDHANVQVLPSANVICLHEENLLDVQKNDTVLAVFPDTTSFYRAQVTKVPKRAQGGLGPLEVMVKFEDDEDE-TGRTPHRRVPARHVL 363
            F+KLE + L  Y+  H   L  +   S +EL  + A HF++  VDEE V+ S+   M   +    LG  +K+        G +        G G APA     G G G  G      GG   +    E+VAA++ N    +    WILA +I+Y   R  Y+V+D DD      +P  NVI L E       K D VLAVFPDTTSFYR  ++K P R  G +   E++V+FEDD D+ TG+TPHRR+ ++ VL
Sbjct:   15 FKKLEEKSLWNYVSLHSIDLEGQIRPSKEELEIICAEHFAQWEVDEEKVVESWIAHMDTDRDVRELGAVKKRNNSEFSPYGPY--------GHGEAPAFGGGRGGGFGGSGCPLDMEGGVRGVVPSGEQVAAKVTNT---NENGSWILAEIIRYLAGRACYEVKDADDPLKQIEVPDNNVIRLREGGQ-GFAKGDDVLAVFPDTTSFYRGTISKQPVRKAGLVA--ELVVQFEDDADQDTGKTPHRRINSKLVL 254          
BLAST of EWM22464.1 vs. NCBI_GenBank
Match: gi|397572604|gb|EJK48328.1| (hypothetical protein THAOC_32887 [Thalassiosira oceanica])

HSP 1 Score: 113.235 bits (282), Expect = 2.218e-24
Identity = 87/274 (31.75%), Postives = 125/274 (45.62%), Query Frame = 0
Query:  118 FRKLEPRVLLKYLEHHGLTAKPDASVDELAALVARHFSREPVDEEVVLHSFFMSGMQATNVLGKFEKKRKRGSGGVGAHYASHHYGGGSGYAPAPRKEA----------GRGLGAGGAAGGGSGAIAKMDEEVAARLPNQMMEDSTAGWILARVIQYAPERDTYQVRDEDDHANVQVLPSANVICLHEENLLDVQKNDTVLAVFPDTTSFYRAQVTKVP--------KRAQGGLGPL------EVMVKFEDDEDETGRTPHRRVPARHVLKLSQ 367
            FR L     L Y    G+    +A   EL   +A+HF    V EE  +  F          L + E              A H  G  +  A A +  A          G  L             A   ++VAA++      +    WILA V++Y PE +TY V+DEDD + +  LP  +V+ L   +   + K+  V+A+FP+TTSFYRA ++K P          + GG+G        EV++KFEDDE+E G+TPHRRVP+R+V+ L Q
Sbjct:   31 FRTLSTATQLSYCGTFGIPVSAEAPQAELGGAIAQHFEGIGVSEEEAIGGF----------LARLETGGNDDVVPPPPPSAIHSTGLNALTAAADQVLADYVRDSTQFDGLALSPARRKWKRRKYSANQGDQVAAKVTRS---EENGSWILAYVLRYYPESETYDVQDEDDTSKLIRLPWNHVMRLSTGSEGWLNKSQQVMAIFPETTSFYRAFISKQPVWTSGTAADESAGGVGNAHKPRVKEVILKFEDDENEEGKTPHRRVPSRYVIPLPQ 291          
BLAST of EWM22464.1 vs. NCBI_GenBank
Match: gi|298711278|emb|CBJ26523.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 103.605 bits (257), Expect = 4.864e-20
Identity = 96/299 (32.11%), Postives = 126/299 (42.14%), Query Frame = 0
Query:  118 FRKLEPRVLLKYLEHHGLTAKPDASVDELAALVARHFSREPVDEEVVLHSFFMSGMQA------TNVLGKFE-KKRKR-------------------------GSGGVGAHYASHH----------------YGGGSGYAPAPRKEAGRGLGAGG-----AAGGGSGAIAKMDEEVAARLPNQMMEDSTAGWILARVIQYAPERDTYQVRDEDDHANVQVLPSANVICLHEENLLDVQKNDTVLAVFPDTTSFYRAQVTKVPKRAQGGLGPLEVMVKFEDDEDETGRTPHRRVPARHVL 363
            FR+L    LL Y  HH L  +PD++ +ELA   ARHF+   ++EE ++ S F  G+ +      T  LG  E  KRKR                          S G G+    HH                    S      R  A    G  G     A G  S +       V      Q+    +  WILARV+Q+       ++ DEDD ++V  LP + V  L E+   D+ K+D VLAVFPDTT FY A V K   R  G    L  +V FEDDED  G   +RR+P  HV+
Sbjct:   30 FRRLPTSTLLTYTAHHDLHVRPDSTHEELAIATARHFAAWRINEESIMRS-FCQGLASSTIGTPTRTLGDAENNKRKRLDSLDRDLNIVPPSPELLGLANAAAASVGRGSRRDPHHKSSSNPRSPPRSRSRGGAANSNGGGGARDRASDRRGDDGGLGLLAQGAASSSSLFTHRPVVFDTAEQVAAYVSGAWILARVVQHKGY-GKVELHDEDDASHVFELPISQVRHL-EDLSSDLGKHDKVLAVFPDTTIFYCATVAKDSPRMDGNTKVL--VVYFEDDEDANGGHQYRRIPVEHVM 323          

HSP 2 Score: 73.559 bits (179), Expect = 2.467e-10
Identity = 33/67 (49.25%), Postives = 43/67 (64.18%), Query Frame = 0
Query:  387 GGGRKGMRDYKIMISHALQKLPNSKGTLKEIFKIIENDFRDELQWKMEGDGKKGPIWKSQVRKLLVN 453
            GG +KG   Y  MI+HAL K+ N KG   +I  IIE  F + L WK+E D +K P+WKS VRK+L +
Sbjct:  427 GGSKKGGATYADMIAHALGKVENGKGAFTQICNIIERQFSEYLNWKLESDVRKTPVWKSSVRKILFS 493          
BLAST of EWM22464.1 vs. NCBI_GenBank
Match: gi|298711365|emb|CBJ32510.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 83.5741 bits (205), Expect = 2.380e-14
Identity = 51/117 (43.59%), Postives = 67/117 (57.26%), Query Frame = 0
Query:  250 EDSTAGWILARVIQYAPERDTYQVRDEDDHANVQVLPSANVICLHEENLLDVQKNDTVLAVFPDTTSFYRAQVTKVPKRAQGGLGPL-EVMVKFEDDEDETGRTPHRRVPARHVLKL 365
            ED  A W+L RV+ +  E   Y+V DEDD++    +    VI L E     + K D VLAV+ DTTSFY A +  +P R +G +G      V+F DD DE G TPHR VP  H++KL
Sbjct:  152 EDPEADWVLGRVLSWMHETGQYEVMDEDDNSKKLTMDEHQVIPL-EGRTERLSKGDDVLAVYVDTTSFYHATIA-IPPRGRGQIGNGGTAHVQFVDDADEHGVTPHRAVPIIHIIKL 266          
The following BLAST results are available for this feature:
BLAST of EWM22464.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102970|gb|EWM22464.1|0.000e+0100.00SGF29 tudor-like domain protein [Nannochloropsis g... [more]
gi|219124229|ref|XP_002182411.1|3.626e-3435.86predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210528498|dbj|GAX12695.1|4.134e-3234.22SAGA-associated factor 29 [Fistulifera solaris][more]
gi|1210517744|dbj|GAX23440.1|5.543e-3234.22SAGA-associated factor 29 [Fistulifera solaris][more]
gi|298704800|emb|CBJ48948.1|2.009e-3035.86conserved unknown protein [Ectocarpus siliculosus][more]
gi|1072238608|gb|OEU23335.1|2.577e-2933.57hypothetical protein FRACYDRAFT_178807 [Fragilario... [more]
gi|298708672|emb|CBJ26159.1|3.118e-2737.01conserved unknown protein [Ectocarpus siliculosus][more]
gi|397572604|gb|EJK48328.1|2.218e-2431.75hypothetical protein THAOC_32887 [Thalassiosira oc... [more]
gi|298711278|emb|CBJ26523.1|4.864e-2032.11conserved unknown protein [Ectocarpus siliculosus][more]
gi|298711365|emb|CBJ32510.1|2.380e-1443.59conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8263rna8263Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications