EWM22464.1, cds8239 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22464.1 vs. NCBI_GenBank
Match: gi|585102970|gb|EWM22464.1| (SGF29 tudor-like domain protein [Nannochloropsis gaditana]) HSP 1 Score: 982.63 bits (2539), Expect = 0.000e+0 Identity = 481/481 (100.00%), Postives = 481/481 (100.00%), Query Frame = 0
Query: 1 MEGEQEGIMRGSAGAWNLSAHPVCQGVDDRGDLLPTHVPPVPATNGAPPAGGDVDTKVPIPTNVGGVLVGGTAENGTPPVHDIATEGPPSASAPTAPATGLSESIGSSPGSRLGSQTFRKLEPRVLLKYLEHHGLTAKPDASVDELAALVARHFSREPVDEEVVLHSFFMSGMQATNVLGKFEKKRKRGSGGVGAHYASHHYGGGSGYAPAPRKEAGRGLGAGGAAGGGSGAIAKMDEEVAARLPNQMMEDSTAGWILARVIQYAPERDTYQVRDEDDHANVQVLPSANVICLHEENLLDVQKNDTVLAVFPDTTSFYRAQVTKVPKRAQGGLGPLEVMVKFEDDEDETGRTPHRRVPARHVLKLSQVGRFEAANGMGRDGEDYGDGGGRKGMRDYKIMISHALQKLPNSKGTLKEIFKIIENDFRDELQWKMEGDGKKGPIWKSQVRKLLVNPRSGFMFINAGGERGSQYYAAGGGSGGY 481
MEGEQEGIMRGSAGAWNLSAHPVCQGVDDRGDLLPTHVPPVPATNGAPPAGGDVDTKVPIPTNVGGVLVGGTAENGTPPVHDIATEGPPSASAPTAPATGLSESIGSSPGSRLGSQTFRKLEPRVLLKYLEHHGLTAKPDASVDELAALVARHFSREPVDEEVVLHSFFMSGMQATNVLGKFEKKRKRGSGGVGAHYASHHYGGGSGYAPAPRKEAGRGLGAGGAAGGGSGAIAKMDEEVAARLPNQMMEDSTAGWILARVIQYAPERDTYQVRDEDDHANVQVLPSANVICLHEENLLDVQKNDTVLAVFPDTTSFYRAQVTKVPKRAQGGLGPLEVMVKFEDDEDETGRTPHRRVPARHVLKLSQVGRFEAANGMGRDGEDYGDGGGRKGMRDYKIMISHALQKLPNSKGTLKEIFKIIENDFRDELQWKMEGDGKKGPIWKSQVRKLLVNPRSGFMFINAGGERGSQYYAAGGGSGGY
Sbjct: 1 MEGEQEGIMRGSAGAWNLSAHPVCQGVDDRGDLLPTHVPPVPATNGAPPAGGDVDTKVPIPTNVGGVLVGGTAENGTPPVHDIATEGPPSASAPTAPATGLSESIGSSPGSRLGSQTFRKLEPRVLLKYLEHHGLTAKPDASVDELAALVARHFSREPVDEEVVLHSFFMSGMQATNVLGKFEKKRKRGSGGVGAHYASHHYGGGSGYAPAPRKEAGRGLGAGGAAGGGSGAIAKMDEEVAARLPNQMMEDSTAGWILARVIQYAPERDTYQVRDEDDHANVQVLPSANVICLHEENLLDVQKNDTVLAVFPDTTSFYRAQVTKVPKRAQGGLGPLEVMVKFEDDEDETGRTPHRRVPARHVLKLSQVGRFEAANGMGRDGEDYGDGGGRKGMRDYKIMISHALQKLPNSKGTLKEIFKIIENDFRDELQWKMEGDGKKGPIWKSQVRKLLVNPRSGFMFINAGGERGSQYYAAGGGSGGY 481
BLAST of EWM22464.1 vs. NCBI_GenBank
Match: gi|219124229|ref|XP_002182411.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406372|gb|EEC46312.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 139.043 bits (349), Expect = 3.626e-34 Identity = 90/251 (35.86%), Postives = 135/251 (53.78%), Query Frame = 0
Query: 118 FRKLEPRVLLKYLEHHGLTAKPDASVDELAALVARHFSREPVDEEVVLHSFFMSGMQATNVLGKFEKKRKRGSGGVGAHYASHHYGGGSGYAPAPRKEAGRGLGAGGAAGGGSGAIAKMDEEVAARLPNQMMEDSTAGWILARVIQYAPERDTYQVRDEDDHANVQVLPSANVICLHEENLLDVQKNDTVLAVFPDTTSFYRAQVTKVPKRAQGGLGP---LEVMVKFEDDEDETGRTPHRRVPARHVLKL 365
FRKL LL Y++HHG+ + +A ELA VARHF VDEE +G F ++ ++G G + + G + PA +++ + AAG G E+VAA++ D WILA V ++ + +TY V+DEDD + + LP ++V+ L +K++ +A+FP+TTSFYRA+++K P LG E++VKFEDD+D GRTPHRRVPAR+V+ +
Sbjct: 37 FRKLAGLTLLSYIDHHGVAVRAEAPPSELAVAVARHFEAMEVDEE--------------ECIGGFLERLEKGPGATEYARQTAFFDGRALALPARKRKRSK-----LAAGPG--------EQVAAKVTRT---DENGSWILASVQRFYTDTETYDVQDEDDTSKLIRLPWSHVMRLSTGAEGCFKKDNDCMAIFPETTSFYRAKISKDPIWKVDRLGEPTVKEIIVKFEDDDDAQGRTPHRRVPARYVIPI 257
BLAST of EWM22464.1 vs. NCBI_GenBank
Match: gi|1210528498|dbj|GAX12695.1| (SAGA-associated factor 29 [Fistulifera solaris]) HSP 1 Score: 133.65 bits (335), Expect = 4.134e-32 Identity = 90/263 (34.22%), Postives = 134/263 (50.95%), Query Frame = 0
Query: 118 FRKLEPRVLLKYLEHHGLTAKPDASVDELAALVARHFSREPVDEEVVLHSFFMSGMQATNVLGKFEKKRKRGSGGVGAHYASHHYGGGSGYAPAPRKEAGRGLGAGGAAGGGSGAIAKMDEEVAARLPNQMMEDSTAGWILARVIQYAPERDTYQVRDEDDHANVQVLPSANVICLHEENLLDVQKNDTVLAVFPDTTSFYRAQVTKVPKRAQGGLG-PL--EVMVKFEDDEDETGRTPHRRVPARHVLKLSQVGRFEAANGM 377
FRK+ LL Y++H G+ + DA ELA VARHF + +DEE + F Q T + K A + G+AP+ + L A+ E+VAA++ D WILA V ++ P+ +TY V+DEDD + + LP +V+ L + K+ +A+FP+TTSFYR++V+K P G P+ E++VKFEDDED GRTP+RRVPAR+V+ + +E A+ +
Sbjct: 33 FRKVSGLTLLNYIDHQGVKIRTDAPQGELAVAVARHFEQMEIDEEECIGGFLERLEQPTGITDYMRKT---------AFF--------DGHAPSLEVRKRKRLA------------ARPGEQVAAKVTRT---DENGSWILASVQRFYPDSETYDVQDEDDTSKLIRLPWTHVMRLSNGTEGNFVKDKDCMAIFPETTSFYRSKVSKNPVWVMDRNGIPMVKEIIVKFEDDEDSQGRTPNRRVPARYVIPIPADYFYEEADDV 263
BLAST of EWM22464.1 vs. NCBI_GenBank
Match: gi|1210517744|dbj|GAX23440.1| (SAGA-associated factor 29 [Fistulifera solaris]) HSP 1 Score: 133.265 bits (334), Expect = 5.543e-32 Identity = 90/263 (34.22%), Postives = 133/263 (50.57%), Query Frame = 0
Query: 118 FRKLEPRVLLKYLEHHGLTAKPDASVDELAALVARHFSREPVDEEVVLHSFFMSGMQATNVLGKFEKKRKRGSGGVGAHYASHHYGGGSGYAPAPRKEAGRGLGAGGAAGGGSGAIAKMDEEVAARLPNQMMEDSTAGWILARVIQYAPERDTYQVRDEDDHANVQVLPSANVICLHEENLLDVQKNDTVLAVFPDTTSFYRAQVTKVPKRAQGGLG-PL--EVMVKFEDDEDETGRTPHRRVPARHVLKLSQVGRFEAANGM 377
FRK+ LL Y++H G+ + DA ELA VARHF + +DEE + F Q T + K A + G+AP + L A + E+VAA++ D WILA V ++ P+ +TY V+DEDD + + LP +V+ L + K+ +A+FP+TTSFYR++V+K P G P+ E++VKFEDDED GRTP+RRVPAR+V+ + +E A+ +
Sbjct: 35 FRKVSGLTLLNYIDHQGVKIRTDAPQGELAVAVARHFEQMEIDEEECIGGFLERLEQPTGITDYIRKT---------AFF--------DGHAPTLEVRKRKRLAA------------RPGEQVAAKVTRT---DENGSWILASVQRFYPDSETYDVQDEDDTSKLIRLPWTHVMRLSNGTEGNFTKDKDCMAIFPETTSFYRSKVSKNPVWVLDRNGIPMVKEIIVKFEDDEDSQGRTPNRRVPARYVIPIPADYFYEEADDV 265
BLAST of EWM22464.1 vs. NCBI_GenBank
Match: gi|298704800|emb|CBJ48948.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 135.191 bits (339), Expect = 2.009e-30 Identity = 104/290 (35.86%), Postives = 139/290 (47.93%), Query Frame = 0
Query: 215 EAGRGLGAGGAAGGGSGAIAKMDEEVAARLPNQMMEDSTAGWILARVIQYAPERDTYQVRDEDDHANVQVL--PSANVICLHEENLLDVQKNDTVLAVFPDTTSFYRAQVTKVPKRAQGGLGPLEVMVKFEDDEDETGRTPHRRVPARHVLKLSQVGRFEAANGMGRDGE-----------------------DYGDGGG--------RKGMRDYKIMISHALQKLPNSKGTLKEIFKIIENDFRDELQWKMEGDGKKGPIWKSQVRKLLVNPRSGFMFINAGGERGSQY 471
+AG G GG G AK E+VA R + WILARVI+Y PE Y+++D+DD + +L P + VI L E++ VQK + VLAVFPDTTSFY + +VPK A G +EV KF DD D+TGRTP R +PAR+V+ L + G E + +D E D D G Y MI AL KLP +G L + IE F + L W+ E ++ P WK+ VR+ L + MF +AG + Y
Sbjct: 351 DAGVKAPPGKRRKGGVGWRAKNGEQVAVRDDRE----EPGAWILARVIKYVPETHQYELKDDDDKEGIGILTAPRSLVIRL-EDSTKGVQKGERVLAVFPDTTSFYLGTIHRVPKPAPGAERRIEV--KFNDDADDTGRTPGRPLPARYVVPLPE-GFEEDDSKPAQDDEPPQTVGGGGGDGGRGGVDGAVEDDVDDPMGGDEDEDEDDDNEPPYAEMIRTALMKLPGRQGNLATVCAYIEEHFHERLNWRSESSLRRTPAWKASVRRTLAH---HPMFCHAGTPERNVY 629
BLAST of EWM22464.1 vs. NCBI_GenBank
Match: gi|1072238608|gb|OEU23335.1| (hypothetical protein FRACYDRAFT_178807 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 128.257 bits (321), Expect = 2.577e-29 Identity = 95/283 (33.57%), Postives = 137/283 (48.41%), Query Frame = 0
Query: 84 ATEGPPSASAPTAPATGLSESIGSSPGSRLGSQTFRKLEPRVLLKYLEHHGLTAKPDASVDELAALVARHFSREPVDEEVVLHSFFMSGMQATNVLGKFEKKRKRGSGGVGAHYASHHYGGGSGYAPAPRKEAGRGLGAGGAAGGGSGAIAKMDEEVAARLPNQMMEDSTAGWILARVIQYAPERDTYQVRDEDDHANVQVLPSANVICLHEENLLDVQKNDTVLAVFPDTTSFYRAQVTKVP--KRAQGGLGPLEVMVKFEDDEDE-TGRTPHRRVPARHVL 363
A+ G S T P TG S S G FRKL L+ Y++HHG+ +P+A ELA VARHF + VDEE V+ F + V ++ +K +R S + R A G E+VAA++ D WILA V ++ + +TY V+DEDD + + LP ++V+ L K+ +A+FP+TTSFY+++V K P K G E++V+FEDDED TG+TP RRVP+R+V+
Sbjct: 46 ASGGSTSTKKKTGPKTGHSRSYPRGVG-----LDFRKLAGLTLVSYIDHHGVKVRPEAPPSELAVAVARHFEQMEVDEEDVIGGFLERLEEGPTVATEYSRKTQRASTRI----------------------VNRKRTKWAARPG---------EQVAAKVTRT---DENGSWILASVQRFYVDTETYDVQDEDDTSKLIRLPWSHVMRLSTGAEGCFVKSADCMAIFPETTSFYKSKVAKSPVWKLDHGVPCVKEIVVQFEDDEDTLTGKTPRRRVPSRYVI 289
BLAST of EWM22464.1 vs. NCBI_GenBank
Match: gi|298708672|emb|CBJ26159.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 120.168 bits (300), Expect = 3.118e-27 Identity = 94/254 (37.01%), Postives = 129/254 (50.79%), Query Frame = 0
Query: 118 FRKLEPRVLLKYLEHHG--LTAKPDASVDELAALVARHFSREPVDEEVVLHSFF--MSGMQATNVLGKFEKKRKRGSGGVGAHYASHHYGGGSGYAPAPRKEAGRGLGAGGA---AGGGSGAIAKMDEEVAARLPNQMMEDSTAGWILARVIQYAPERDTYQVRDEDDHANVQVLPSANVICLHEENLLDVQKNDTVLAVFPDTTSFYRAQVTKVPKRAQGGLGPLEVMVKFEDDEDE-TGRTPHRRVPARHVL 363
F+KLE + L Y+ H L + S +EL + A HF++ VDEE V+ S+ M + LG +K+ G + G G APA G G G G GG + E+VAA++ N + WILA +I+Y R Y+V+D DD +P NVI L E K D VLAVFPDTTSFYR ++K P R G + E++V+FEDD D+ TG+TPHRR+ ++ VL
Sbjct: 15 FKKLEEKSLWNYVSLHSIDLEGQIRPSKEELEIICAEHFAQWEVDEEKVVESWIAHMDTDRDVRELGAVKKRNNSEFSPYGPY--------GHGEAPAFGGGRGGGFGGSGCPLDMEGGVRGVVPSGEQVAAKVTNT---NENGSWILAEIIRYLAGRACYEVKDADDPLKQIEVPDNNVIRLREGGQ-GFAKGDDVLAVFPDTTSFYRGTISKQPVRKAGLVA--ELVVQFEDDADQDTGKTPHRRINSKLVL 254
BLAST of EWM22464.1 vs. NCBI_GenBank
Match: gi|397572604|gb|EJK48328.1| (hypothetical protein THAOC_32887 [Thalassiosira oceanica]) HSP 1 Score: 113.235 bits (282), Expect = 2.218e-24 Identity = 87/274 (31.75%), Postives = 125/274 (45.62%), Query Frame = 0
Query: 118 FRKLEPRVLLKYLEHHGLTAKPDASVDELAALVARHFSREPVDEEVVLHSFFMSGMQATNVLGKFEKKRKRGSGGVGAHYASHHYGGGSGYAPAPRKEA----------GRGLGAGGAAGGGSGAIAKMDEEVAARLPNQMMEDSTAGWILARVIQYAPERDTYQVRDEDDHANVQVLPSANVICLHEENLLDVQKNDTVLAVFPDTTSFYRAQVTKVP--------KRAQGGLGPL------EVMVKFEDDEDETGRTPHRRVPARHVLKLSQ 367
FR L L Y G+ +A EL +A+HF V EE + F L + E A H G + A A + A G L A ++VAA++ + WILA V++Y PE +TY V+DEDD + + LP +V+ L + + K+ V+A+FP+TTSFYRA ++K P + GG+G EV++KFEDDE+E G+TPHRRVP+R+V+ L Q
Sbjct: 31 FRTLSTATQLSYCGTFGIPVSAEAPQAELGGAIAQHFEGIGVSEEEAIGGF----------LARLETGGNDDVVPPPPPSAIHSTGLNALTAAADQVLADYVRDSTQFDGLALSPARRKWKRRKYSANQGDQVAAKVTRS---EENGSWILAYVLRYYPESETYDVQDEDDTSKLIRLPWNHVMRLSTGSEGWLNKSQQVMAIFPETTSFYRAFISKQPVWTSGTAADESAGGVGNAHKPRVKEVILKFEDDENEEGKTPHRRVPSRYVIPLPQ 291
BLAST of EWM22464.1 vs. NCBI_GenBank
Match: gi|298711278|emb|CBJ26523.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 103.605 bits (257), Expect = 4.864e-20 Identity = 96/299 (32.11%), Postives = 126/299 (42.14%), Query Frame = 0
Query: 118 FRKLEPRVLLKYLEHHGLTAKPDASVDELAALVARHFSREPVDEEVVLHSFFMSGMQA------TNVLGKFE-KKRKR-------------------------GSGGVGAHYASHH----------------YGGGSGYAPAPRKEAGRGLGAGG-----AAGGGSGAIAKMDEEVAARLPNQMMEDSTAGWILARVIQYAPERDTYQVRDEDDHANVQVLPSANVICLHEENLLDVQKNDTVLAVFPDTTSFYRAQVTKVPKRAQGGLGPLEVMVKFEDDEDETGRTPHRRVPARHVL 363
FR+L LL Y HH L +PD++ +ELA ARHF+ ++EE ++ S F G+ + T LG E KRKR S G G+ HH S R A G G A G S + V Q+ + WILARV+Q+ ++ DEDD ++V LP + V L E+ D+ K+D VLAVFPDTT FY A V K R G L +V FEDDED G +RR+P HV+
Sbjct: 30 FRRLPTSTLLTYTAHHDLHVRPDSTHEELAIATARHFAAWRINEESIMRS-FCQGLASSTIGTPTRTLGDAENNKRKRLDSLDRDLNIVPPSPELLGLANAAAASVGRGSRRDPHHKSSSNPRSPPRSRSRGGAANSNGGGGARDRASDRRGDDGGLGLLAQGAASSSSLFTHRPVVFDTAEQVAAYVSGAWILARVVQHKGY-GKVELHDEDDASHVFELPISQVRHL-EDLSSDLGKHDKVLAVFPDTTIFYCATVAKDSPRMDGNTKVL--VVYFEDDEDANGGHQYRRIPVEHVM 323 HSP 2 Score: 73.559 bits (179), Expect = 2.467e-10 Identity = 33/67 (49.25%), Postives = 43/67 (64.18%), Query Frame = 0
Query: 387 GGGRKGMRDYKIMISHALQKLPNSKGTLKEIFKIIENDFRDELQWKMEGDGKKGPIWKSQVRKLLVN 453
GG +KG Y MI+HAL K+ N KG +I IIE F + L WK+E D +K P+WKS VRK+L +
Sbjct: 427 GGSKKGGATYADMIAHALGKVENGKGAFTQICNIIERQFSEYLNWKLESDVRKTPVWKSSVRKILFS 493
BLAST of EWM22464.1 vs. NCBI_GenBank
Match: gi|298711365|emb|CBJ32510.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 83.5741 bits (205), Expect = 2.380e-14 Identity = 51/117 (43.59%), Postives = 67/117 (57.26%), Query Frame = 0
Query: 250 EDSTAGWILARVIQYAPERDTYQVRDEDDHANVQVLPSANVICLHEENLLDVQKNDTVLAVFPDTTSFYRAQVTKVPKRAQGGLGPL-EVMVKFEDDEDETGRTPHRRVPARHVLKL 365
ED A W+L RV+ + E Y+V DEDD++ + VI L E + K D VLAV+ DTTSFY A + +P R +G +G V+F DD DE G TPHR VP H++KL
Sbjct: 152 EDPEADWVLGRVLSWMHETGQYEVMDEDDNSKKLTMDEHQVIPL-EGRTERLSKGDDVLAVYVDTTSFYHATIA-IPPRGRGQIGNGGTAHVQFVDDADEHGVTPHRAVPIIHIIKL 266 The following BLAST results are available for this feature:
BLAST of EWM22464.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|