rna8261, rna8261 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8261
Unique Name	rna8261
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2142
Alignment location	KK037248.1:217827..219609 -

Link to JBrowse

Properties


Property Name	Value
Product	fidgetin-like 1
Orig transcript id	gnl\|cribi\|Naga_100011g72.3441.mrna
Orig protein id	gnl\|cribi\|Naga_100011g72.3441
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:217827..219609 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100011g72	gene8001	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8261	rna8261-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22441.1	cds8237	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:217827..219609-
coding sequence from alignment at KK037248.1:217827..219609-

mRNA sequence

>rna8261 ID=rna8261|Name=rna8261|organism=Nannochloropsis gaditana|type=mRNA|length=2142bp
CAAGCGGCCCGTTCCGTGCTTTGGGCGGTTTTACCTCTGCGTCTCCAGCT
CGATATCTTATTGTCAGACCCACAGCTTCTGCTTCTCGATGAGCAATACC
AGTGGCTGTTGTCAAAGCTCCCTCATCTACCGCGACCCTGCCTTGGAGCT
CTTGGGCTCCAGCTGTCGTACTGGGTGGGGGCCGGCCCGCTGCCTAATCG
AGACCCACCCCCGCCCCTGCCCATGAGCCCACGCTTGATGGTGAGAGTAT
GCAATCGCGAGACTGAGGGAGCAGAGGTCCGGGGCGTGCCGCTTTTTTCT
GCTTGGTCGCCACGGGACAGGGTCGTGGAGGGTTTGGCCATGGCCGTTGA
CGCTACTGCTCAGAAAGCTGACGTTTCGGACCCGAAACGAAAACAAAAGG
AGGCTTATTCCACTACTGATGAGGAAGTCTCTGAGAACTTGGAAGAGGTG
GAGGCCAGGAAGGAGAAGCAACGGCGTAATCGCATGCTCGCCGATATGTT
TTTGGAAGTCCTCTTTATCCTCGCGGAGCCGCTCGCTTTCACCCCCATAG
CCTTACAGGCGCGCCGTTTTGCGCAGTCCAGTGCGACAGACAACGGGCTG
CCAAAGCGTCCTGTGGGTCTATCCGCTTCTGTAATGGAAGGGTTTGAAGC
TCAAGTGCTGCTTGAGAAGTTGCTTGCAAGATGGAGCTGCGAGGTTACCG
TCAACGGGCCAGCCGCCGCCGCTTCTCCGCGGGAAAAGCGATTTACACCG
GCAACCACCTTAATGCGAGCACTGAGGGGGGAATACAAGAACTCTGGGGC
CGCGGCTTTGTTGCTAGAGGCAGCTGGCGACTGGGAGGATGCACTGAGGT
TGCGTTTAGAGGAGATAATTGAAATTTTGGTGTCTGGTGGAAATGGAGAT
GACGATGAGCTCTCTGATCAGGCGGTCGAGGTGCTCTTGGGGCTGCTTCA
TAGCCACGTATTGCGGCGTCGGGGAATCAACAAGCTGTCGACCCGTGAGC
GGATGGCGATCAACCTGTTGCAGGCGTGGGCCTCTATGGAACTACCTTCG
AATCCTCTGGAAGACGCCATACTGTCGCCCGCTTTCTGCAACGCTGTATC
CTACGGAAATGTCACAAGTCCCATAAGCACAAATGACTGCCTTTGGGTTT
GGCACATGGGCATGGCCCTCATGGCGAGTCTCCTGATCCTCCATGCCGGC
ACGCCAGGCAGCTTGGTGGACGCTGATGGCGGGTTGACGGTGCCAGGGTC
GAAACCTTTACGTTTCTCATCCTCCTTCTATGTTCGTCTGACCGAACACG
TGATAGAGCATGGCTCTGTGATGCAGGAACTGGGTGTGACAGACTTATGG
AGCACGGGAGGTCGAGAGCCAACGCAGCTCCGCATCCCCATGCCAATCCC
AGCTTTGTGGGACTCGGTGTGCCAGCAAATAAGTCATCTCGAGCGGGGTC
AAGCAGCCTCCAATCGCGTCGAGGTTCCCGTTGAGAGCTTACTGGCAGCT
GCGTATCGGTCTCCAAGCTATGAAGGCGGCGACACGCGCGACCGATTAGA
TGAAGAGCGGGGCTCTGAATACTCAAGAGCTTTCGCGAACGGGCGGAGTT
CGGAGGGAGTGGTAGGGAGATTTCGTGTCGTGGCTTTCAGTTGCGGACAT
GTGCTGAACCAAGCCGAGCTAGTTCAGGTTTTCGTGCCATCGCTGGCAAG
CAAGTTGACAAGTCTAGCCAGACCTCTGCATTTAACAGCAGAAATTTTGT
GCCAAGAGTACCAAGCAGCCATTAGGTCTAATAAATATGGCCCTGAAAGT
AGTGTCAATAAACAAAGGTCCGACGCACACATAAGCCTTGCGTGTCCGTC
GTGTGTTGCGGACTTTTTGGTCAACATGCTTGAACAGGACAAGAATGATT
GTAAACCACCTCTGCGCTGAGCTCGGAAAACTAGTGTTAAATGATGTTGG
CAAGTGTGCTTATGTACATAAAAGATGAAACAAAATATTGTGTATTCTTT
ATGCTACTCTCTAGATTCCTCCTCCTCCAACGCCTGAGGAGCCAAGTCCT
CCGGGTGCGGCGACAGGTGCAGGGAGACCCCTGGGATGTGTACAGGCTGG
TCAGAGTTAGCATTTTTTTCAAAAGCCATCGAACCTTGACAG

protein sequence of rna8261

>rna8261-protein ID=rna8261-protein|Name=rna8261|organism=Nannochloropsis gaditana|type=polypeptide|length=499bp
MSGPSDGPSFHGVSVFGSVKRKTSVPAPTSSSLPNPSVQRALQVAQRAVE
LDECGRAEEAFPLYQEAVALLLAAVKQDRAGNDQIKRAANKYLTRAEEID
RLLTLRKQQTKESPNSRLKKDARSNNFPLASTKGLEKGRASAAVPTGSRM
PRRPDDYDYTGGRARKGEGGAAVSHGSVGRAGGMGERSGGNTLSSTGARP
GRASDLEAIVMEEMLDRSPGVTWEQISGLEDAKHTLQEAVVLPNLRPDLF
KGLRAPPRGVLLFGPPGTGKTLLAKAVASETGFAFFSISASSLVSKFLGE
GEKMVRALFQVARREQPSVVFIDEIDSMLGQRKDQEHEATRRLKTEFLVQ
LDGAGTDNEDRILVMGATNLPWALDEAVLRRLPKKIFIPLPDTITRATLL
KNLLQSQKHALTPDHLGEIVGRTAGYSCSDLAQVAKDAAMGPLRDLDGPV
LRTVKENQLRPISMADFDHAIYAIRPSVSQGTVQAFEKYMTDNGYIRHS

mRNA from alignment at KK037248.1:217827..219609-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8261 ID=rna8261|Name=rna8261|organism=Nannochloropsis gaditana|type=mRNA|length=1783bp|location=Sequence derived from alignment at KK037248.1:217827..219609- (Nannochloropsis gaditana)
TTGGACTGCCTCGAAATAATTTGAGGCCGTGTTCTCTCTTTTTTACTTTT
GCTGAGGGCATGTGCGCAGGACACCGACCTTGCCAGCCAAAGTAGCCACA
ACATTATCTTTTTGATATTGCACGGAATTGCAAAGACGATTAAATATGAG
CGGGCCGTCGGACGGACCATCCTTTCATGGTGTCTCGGTCTTTGGGAGCG
TGAAAAGGAAGACTTCGGTTCCGGCGCCGACCTCGTCGTCGCTGCCAAAT
CCCTCCGTCCAACGCGCATTGCAGGTCGCTCAACGCGCTGTCGAGCTCGA
CGAATGCGGTCGTGCCGAGGAGGCGTTCCCACTGTATCAAGAGGCTGTCG
CTCTTTTGCTTGCTGCTGTAAAACAAGATAGGGCTGGCAACGATCAGATC
AAACGGGCGGCCAACAAATACCTTACCCGAGCGGAGGAAATCGATCGACT
GTTGACCCTGAGAAAGCAACAAACCAAGGAATCACCAAATTCGAGGCTGA
AAAAAGACGCTCGTTCCAATAACTTTCCACTTGCATCGACAAAAGGCCTC
GAGAAGGGGCGTGCCTCGGCGGCGGTCCCGACGGGGTCTCGAATGCCCAG
GAGGCCCGACGACTACGATTACACGGGGGGGCGGGCAAGGAAAGGCGAGG
GGGGGGCGGCAGTAAGCCACGGGTCCGTGGGCCGAGCAGGTGGTATGGGT
GAAAGGAGTGGGGGGAACACTCTCAGTTCAACCGGTGCGCGTCCAGGGCG
AGCAAGCGACCTGGAAGCGATTGTGATGGAGGAGATGCTTGACAGGTCAC
CCGGGGTGACCTGGGAACAGATTTCAGGTCTCGAGGATGCAAAGCACACT
TTGCAGGAGGCTGTGGTGTTGCCAAACCTCCGTCCCGACCTCTTCAAAGG
ACTGCGTGCCCCCCCCCGTGGGGTCCTGCTCTTCGGGTAAGTTCTCTCCG
TATTCATGTTGTCGTTTCCCTCCGGAAACTTTCATTCTTTTCTTTCTCAT
ACAGTCCTCCAGGTACGGGAAAGACACTTCTAGCCAAGGCAGTGGCCAGT
GAAACGGGCTTTGCGTTCTTCTCCATCTCTGCCTCTTCCCTGGTATCAAA
GTTCCTCGGCGAGGGCGAGAAGATGGTTCGCGCGCTTTTTCAAGTGGCGC
GCAGAGAGCAGCCATCGGTTGTTTTCATCGATGAAATAGATAGTATGCTG
GGTCAGCGCAAAGATCAAGAACACGAAGCCACGCGGAGGCTCAAGACTGA
ATTTCTCGTGCAGCTCGACGGGGCTGGCACAGACAATGAGGACAGAATCC
TGGTTATGGGTGCCACTAATTTGCCGTGGGCCTTGGACGAGGCTGTTCTC
CGAAGGCTCCCAAAGAAAATTTTTATTCCGCTTCCTGATACCATCACTCG
AGCGACGTTGCTCAAGAATCTACTGCAGAGCCAGAAGCACGCCCTTACGC
CAGACCATCTAGGTGAGATTGTTGGTCGCACGGCAGGTTACAGCTGCAGC
GATTTGGCACAGGTGGCCAAGGATGCGGCGATGGGTCCGTTGCGGGACTT
GGATGGTCCAGTGCTGAGGACTGTAAAAGAAAACCAATTGCGCCCCATAA
GCATGGCTGATTTTGACCACGCCATCTACGCTATTCGGCCCAGCGTCTCG
CAAGGCACGGTGCAGGCGTTCGAAAAGTACATGACAGATAATGGGTACAT
TCGACACAGTTAATCCAAAATCCAATGTAGATAAAACTACGAACGATAGC
ATTACCATGAACCGAAGTAGAAAGGTGTTGAAA

Coding sequence (CDS) from alignment at KK037248.1:217827..219609-

>rna8261 ID=rna8261|Name=rna8261|organism=Nannochloropsis gaditana|type=CDS|length=3000bp|location=Sequence derived from alignment at KK037248.1:217827..219609- (Nannochloropsis gaditana)
TCCTCCAGGTACGGGAAAGACACTTCTAGCCAAGGCAGTGGCCAGTGAAA
CGGGCTTTGCGTTCTTCTCCATCTCTGCCTCTTCCCTGGTATCAAAGTTC
CTCGGCGAGGGCGAGAAGATGGTTCGCGCGCTTTTTCAAGTGGCGCGCAG
AGAGCAGCCATCGGTTGTTTTCATCGATGAAATAGATAGTATGCTGGGTC
AGCGCAAAGATCAAGAACACGAAGCCACGCGGAGGCTCAAGACTGAATTT
CTCGTGCAGCTCGACGGGGCTGGCACAGACAATGAGGACAGAATCCTGGT
TATGGGTGCCACTAATTTGCCGTGGGCCTTGGACGAGGCTGTTCTCCGAA
GGCTCCCAAAGAAAATTTTTATTCCGCTTCCTGATACCATCACTCGAGCG
ACGTTGCTCAAGAATCTACTGCAGAGCCAGAAGCACGCCCTTACGCCAGA
CCATCTAGGTGAGATTGTTGGTCGCACGGCAGGTTACAGCTGCAGCGATT
TGGCACAGGTGGCCAAGGATGCGGCGATGGGTCCGTTGCGGGACTTGGAT
GGTCCAGTGCTGAGGACTGTAAAAGAAAACCAATTGCGCCCCATAAGCAT
GGCTGATTTTGACCACGCCATCTACGCTATTCGGCCCAGCGTCTCGCAAG
GCACGGTGCAGGCGTTCGAAAAGTACATGACAGATAATGGGTACATTCGA
CACAGTTAAATGAGCGGGCCGTCGGACGGACCATCCTTTCATGGTGTCTC
GGTCTTTGGGAGCGTGAAAAGGAAGACTTCGGTTCCGGCGCCGACCTCGT
CGTCGCTGCCAAATCCCTCCGTCCAACGCGCATTGCAGGTCGCTCAACGC
GCTGTCGAGCTCGACGAATGCGGTCGTGCCGAGGAGGCGTTCCCACTGTA
TCAAGAGGCTGTCGCTCTTTTGCTTGCTGCTGTAAAACAAGATAGGGCTG
GCAACGATCAGATCAAACGGGCGGCCAACAAATACCTTACCCGAGCGGAG
GAAATCGATCGACTGTTGACCCTGAGAAAGCAACAAACCAAGGAATCACC
AAATTCGAGGCTGAAAAAAGACGCTCGTTCCAATAACTTTCCACTTGCAT
CGACAAAAGGCCTCGAGAAGGGGCGTGCCTCGGCGGCGGTCCCGACGGGG
TCTCGAATGCCCAGGAGGCCCGACGACTACGATTACACGGGGGGGCGGGC
AAGGAAAGGCGAGGGGGGGGCGGCAGTAAGCCACGGGTCCGTGGGCCGAG
CAGGTGGTATGGGTGAAAGGAGTGGGGGGAACACTCTCAGTTCAACCGGT
GCGCGTCCAGGGCGAGCAAGCGACCTGGAAGCGATTGTGATGGAGGAGAT
GCTTGACAGGTCACCCGGGGTGACCTGGGAACAGATTTCAGGTCTCGAGG
ATGCAAAGCACACTTTGCAGGAGGCTGTGGTGTTGCCAAACCTCCGTCCC
GACCTCTTCAAAGGACTGCGTGCCCCCCCCCGTGGGGTCCTGCTCTTCGG
TCCTCCAGGTACGGGAAAGACACTTCTAGCCAAGGCAGTGGCCAGTGAAA
CGGGCTTTGCGTTCTTCTCCATCTCTGCCTCTTCCCTGGTATCAAAGTTC
CTCGGCGAGGGCGAGAAGATGGTTCGCGCGCTTTTTCAAGTGGCGCGCAG
AGAGCAGCCATCGGTTGTTTTCATCGATGAAATAGATAGTATGCTGGGTC
AGCGCAAAGATCAAGAACACGAAGCCACGCGGAGGCTCAAGACTGAATTT
CTCGTGCAGCTCGACGGGGCTGGCACAGACAATGAGGACAGAATCCTGGT
TATGGGTGCCACTAATTTGCCGTGGGCCTTGGACGAGGCTGTTCTCCGAA
GGCTCCCAAAGAAAATTTTTATTCCGCTTCCTGATACCATCACTCGAGCG
ACGTTGCTCAAGAATCTACTGCAGAGCCAGAAGCACGCCCTTACGCCAGA
CCATCTAGGTGAGATTGTTGGTCGCACGGCAGGTTACAGCTGCAGCGATT
TGGCACAGGTGGCCAAGGATGCGGCGATGGGTCCGTTGCGGGACTTGGAT
GGTCCAGTGCTGAGGACTGTAAAAGAAAACCAATTGCGCCCCATAAGCAT
GGCTGATTTTGACCACGCCATCTACGCTATTCGGCCCAGCGTCTCGCAAG
GCACGGTGCAGGCGTTCGAAAAGTACATGACAGATAATGGGTACATTCGA
CACAGTTAAATGAGCGGGCCGTCGGACGGACCATCCTTTCATGGTGTCTC
GGTCTTTGGGAGCGTGAAAAGGAAGACTTCGGTTCCGGCGCCGACCTCGT
CGTCGCTGCCAAATCCCTCCGTCCAACGCGCATTGCAGGTCGCTCAACGC
GCTGTCGAGCTCGACGAATGCGGTCGTGCCGAGGAGGCGTTCCCACTGTA
TCAAGAGGCTGTCGCTCTTTTGCTTGCTGCTGTAAAACAAGATAGGGCTG
GCAACGATCAGATCAAACGGGCGGCCAACAAATACCTTACCCGAGCGGAG
GAAATCGATCGACTGTTGACCCTGAGAAAGCAACAAACCAAGGAATCACC
AAATTCGAGGCTGAAAAAAGACGCTCGTTCCAATAACTTTCCACTTGCAT
CGACAAAAGGCCTCGAGAAGGGGCGTGCCTCGGCGGCGGTCCCGACGGGG
TCTCGAATGCCCAGGAGGCCCGACGACTACGATTACACGGGGGGGCGGGC
AAGGAAAGGCGAGGGGGGGGCGGCAGTAAGCCACGGGTCCGTGGGCCGAG
CAGGTGGTATGGGTGAAAGGAGTGGGGGGAACACTCTCAGTTCAACCGGT
GCGCGTCCAGGGCGAGCAAGCGACCTGGAAGCGATTGTGATGGAGGAGAT
GCTTGACAGGTCACCCGGGGTGACCTGGGAACAGATTTCAGGTCTCGAGG
ATGCAAAGCACACTTTGCAGGAGGCTGTGGTGTTGCCAAACCTCCGTCCC
GACCTCTTCAAAGGACTGCGTGCCCCCCCCCGTGGGGTCCTGCTCTTCGG

Synonyms

Publications