rna826, rna826 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna826
Unique Name	rna826
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2463
Alignment location	CM002456.1:510215..511605 +

Link to JBrowse

Properties


Property Name	Value
Product	translation elongation factor p
Orig transcript id	gnl\|cribi\|Naga_100017g15.298.mrna
Orig protein id	gnl\|cribi\|Naga_100017g15.298
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:510215..511605 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100017g15	gene790	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna826	rna826-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29800.1	cds826	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:510215..511605+
coding sequence from alignment at CM002456.1:510215..511605+

mRNA sequence

>rna826 ID=rna826|Name=rna826|organism=Nannochloropsis gaditana|type=mRNA|length=2463bp
AAAAAATCACGACAGGTTGTGGTGAGAGCTCTGAAAGTGTGGGAGTTGTC
TGTGTCGACTTGTTCGAATTGAAGTGAGGGGGAGGTTATTCTGATTCAAA
TGCGATCCCAAAAGCCTGAAGGGACGCGACCTTTACGGTTAGGCATAAAC
GTCGTGCCACCTGCATGGTGAACCTCATGTCCACCATTGTTGCCTGTGGG
ACGAAGCAGTGGATTCCTCAGTTTCCTTTATCACTTGCTTTCATATACCT
CCGCTCACACGGGAGCGTGGGGATTCGGTTCTCAGCACTCCTCTGCAACA
GAATTTTCTAACTCGATGCCATCATTTTTCAATCATTTTATGTATCAACA
AAGCGTCGACACTCAAAAAGCTCTTCGCTGTAACGTCTTTACTATCAATA
CCAGCCAGAGCGTTGGGAACTGGCGGACACATGACTTTGAACCGAGCACA
TTTCGTGCATAACGTTTGCATCAAGTTTTTCACGGCGCTTCAACTCTTCA
CCTTTTTAAAGTTGACAATATATACTTTGACGCTCTTTGGTCATGGTTTC
GGTATCGGAGTAGCCGCCGCCCCGGCCACGACGTCTTGCAATCCCACATC
TCCTTGCGCGGAGAACGGTTCTCTCGCAGTGAAGAACATACTGTACATAA
TCATAGACGATTTGACGGCCGATTTGTCACTTTTTGGTGGAAAAATAGAT
CAAGCTCCCATTCCTAATCTGCAACATCGACTTGCTCCTCGTGCCGTGAA
CTTTCTGCGTGCGTATGCACAGCAAAGCGTGTGCGGGCCTTCGCGCAATT
CATTTCTCTCAGGGCGGCATCCCGACGAGACACAGTCCTACACGTTTAAA
ACGAGCTTCCGGGACACTTTGCCCGACGCTGTGTCTCTACCTCAAGCCTT
CAAAAACGCGGGCTACTTGACCTGTGGCTTCGGGAAGACCTTCCACGACG
ACGGGATTCCAAGCCCGCCGGACTACGACAATCCGTACAGTTGGTCCCCA
GAGTGCCCATACTACGCTCCTGAAGAAGATTTTTGTGGGGAAGGTCAGCA
TGGTTGGTGCACTCCCGACATGCCTGAAGGTAACTTTACGGACGGGCTGG
TTGTGGACGCGGCGATTGAGCGACTACGCGGGCACGTACATGCACAATCC
GTTGAAGGACGAGGTGATCGACCGTTTTTTTTCGCCGTGGGGATCCGGAA
GCCTCATTTAGATTGGGCAGTGCCCAAGGCCTACTTTGACGCGCAGGTCT
CCCTGAGAGATGTCCGCCTTCCCTCGGACTCGGTCCGAGTGGCCCCGCCA
GGCATGCCAGCTGTCGCTTACTACAACTGTAGCACGGAGCCGCCTTGGAA
GCTGGCCATGCCGGAGATTGTCCTATCGCCCCACGAGCCCTTACAAGACG
AGTTGGAACGAGAATTGCGACGGGCGTACTATGCGGCAGTGACATGGATG
GACGCGAATGTAGGAAAGCTTTTGGACGCCTTGACTGAGCTAGGCCTCGA
CGAGAACACGGCCATAGTTTTCCACTCTGACCACGGTTTTCATCTCTCCG
AGGAAGGAATGTGGTGCAAACAAAACACGCGAGAGATCGGCACGCGCGTA
CCTTTGCTCGTGTCAGCCCCCGGTCTGACAGTGCCATCGGAGGCGCGCCG
AGAAAAGGAACAGAGAGAGACAGCCGGCCTGTCAGAGGCAATCGTCCAGC
TTGTGGACATATACCCCACATTGCTGGACCTGGCTGGGCTCACACTACCT
GATCCCAACATGCGAGGAAGAAGTTTGATCCCTCTAATGCGGCGCTGGGG
CAGTGGAGGCAATGAAACCGAAAATGCGACCGGGTTCGGCGCCGCCTTCT
CCCAGTATCCCCGTTGTGCGAGCACCTCGCTGGCTCCCAGTGGACTGGCA
TCCCAGGGATATCGATGGAATCGGCAATGTGCCTGGCTTGAGAACGACAA
GATCGATGTGATGGGGTACAGCGTGAGAGTGGAGGGATGGAGATACACAG
AGTGGTACACGTGGGAGGCGCGACGAGCCCGGCCTAGATGGAATGCTGCA
GGTCTTGTAGCCGTGGAGCTGTATGCGATGGACATGAGCAGAGGAAAAGG
TGTGATGGAGGAGATGAAGATGGAAGATAAAGTGGCTCGGAATGTGGCAA
ACGACGTACGCTATCGTCAAGAGCAGGAGCATCTGAGCAAGTTGCTCTAT
GACCACTTTTCGTCCTTCCAACCCTTTGCTATGAGCGCCGACGCCGTGGA
TACCTGACCTGTTTACACCACAGACATGGTGCATAAGCTTGAGCGAAAGC
ATGTAACAAAAACTTGGAAGTCTTGCGGCGACATAGTTCTTAATGGCACA
TTCAATAAAAGTCGCTTATTGAGGGTAGCAAGGTTGCCCGTTCTTACACA
GCAGGATGTAAAATTGTACACAAAGCTGCAGGCAATTGAAAATTCACTAT
TTAATCCTGTGTC

protein sequence of rna826

>rna826-protein ID=rna826-protein|Name=rna826|organism=Nannochloropsis gaditana|type=polypeptide|length=233bp
MNLLRASNLDGRLHQFLVFHAFSRARPPLSSQAFPSVIYHARRCFAQING
NQVRVGNVLEYKGKLVMVKRAQAVKPGKGGAFNQVELRDIRTGLKYHERL
RASESVEKVRLDDEELYDYLYEEGDKLVLMNKQDFTQIEVSRNVLSETEQ
KFLQEGLTLRVQFHEGSPLLVRLPRTLVVEVASTEPFSKGSQASPTFKPA
TLSNGEVLKVPPFVGVGEKVIINTEEMEYQSRV

mRNA from alignment at CM002456.1:510215..511605+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna826 ID=rna826|Name=rna826|organism=Nannochloropsis gaditana|type=mRNA|length=1391bp|location=Sequence derived from alignment at CM002456.1:510215..511605+ (Nannochloropsis gaditana)
TCGAGTTAGAAAATTCTGTTGCAGAGGAGTGCTGAGAACCGAATCCCCAC
GCTCCCGTGTGAGCGGAGGTATATGAAAGCAAGTGATAAAGGAAACTGAG
GAATCCACTGCTTCGTCCCACAGGCAACAATGGTGGACATGAGGTTCACC
ATGCAGGTGGCACGACGTTTATGCCTAACCGTAAAGGTCGCGTCCCTTCA
GGCTTTTGGGATCGCATTTGAATCAGAataacctccccctcacttCAATT
CGAACAAGTCGACACAGACAACTCCCACACTTTCAGAGCTCTCACCACAA
CCTGTCGtgattttttttaaaacgcACCCGCGCACGGTCCAGTATGCTGA
TCGCTTTATCATGAATCTACTCCGCGCTAGCAACCTGGATGGAAGGCTTC
ATCAattcctcgtcttccatgCTTTTTCTCGTGCGAGGCCCCCCCTATCC
TCCCAAGCATTCCCATCCGTCATCTATCATGCTAGACGGTGCTTTGCACA
AATAAATGGCAACCAAGTGCGAGTGGGAAATGTGTTGGAATACAAAGGGA
AGCTTGTCATGGTGAAAAGGGCTCAAGCTGTCAAGCCAGGCAAGGGTGGC
GCGTTCAATCAGGTCGAATTGAGGGACATCAGGACAGGTACTTACCGTGG
TAGTCTTGTCTTGCATTAGACTACAGCAGATGCAAACAATGGCGCGGACA
AATGTATTTCGTTGAAGGATGATCAAAAATATGGTTTATGAATGGGAAAC
GTTTGCATGGTAGTTGCACTGGGGGCAGGAAATGCTTGAAGACGATTGAT
AATGTCCTCCACGACATCTTTTCCTCTGTTACTAGGCCTCAAGTACCACG
AGCGGCTACGAGCGTCGGAGAGTGTTGAAAAAGTCAGGCTAGACGATGAG
GAGCTTTACGATTACCTttacgaggaaggggataaACTGGTACTCATGAA
CAAGCAAGACTTCACACAGATAGAGGTATCCCGCAATGTGCTCTCGGAAA
CGGAGCAAAAATTTTTGCAGGAGGGCCTGACACTTCGCGTCCAGTTTCAT
GAAGGATCTCCCCTTTTGGTACGGCTGCCAAGGACGCTGGTGGTTGAGGT
AGCGAGCACGGAGCCCTTTAGCAAGGGAAGCCAGGCCAGCCCCACGTTTA
AGCCTGCCACGCTGAGCAATGGAGAAGTCTTGAAGGTCCCGCCCTTTGTG
GGGGTCGGTGAGAAGGTGATAATTAATACCGAGGAAATGGAGTACCAATC
GAGGGTGTGATGGACCCGGGGCCATGCTCCACCGGAGATGCCGGCTGACT
CGTGAGGATGTGGGAACGTCACAGGTAAGAGATAGTTGGCCAGTGTGCCT
TCGCGCAAATTAAAAAAACAAAGCAACCTGGCCGCAAAACG

Coding sequence (CDS) from alignment at CM002456.1:510215..511605+

>rna826 ID=rna826|Name=rna826|organism=Nannochloropsis gaditana|type=CDS|length=1404bp|location=Sequence derived from alignment at CM002456.1:510215..511605+ (Nannochloropsis gaditana)
ATGAATCTACTCCGCGCTAGCAACCTGGATGGAAGGCTTCATCAattcct
cgtcttccatgCTTTTTCTCGTGCGAGGCCCCCCCTATCCTCCCAAGCAT
TCCCATCCGTCATCTATCATGCTAGACGGTGCTTTGCACAAATAAATGGC
AACCAAGTGCGAGTGGGAAATGTGTTGGAATACAAAGGGAAGCTTGTCAT
GGTGAAAAGGGCTCAAGCTGTCAAGCCAGGCAAGGGTGGCGCGTTCAATC
AGGTCGAATTGAGGGACATCAGGACAGGCCTCAAGTACCACGAGCGGCTA
CGAGCGTCGGAGAGTGTTGAAAAAGTCAGGCTAGACGATGAGGAGCTTTA
CGATTACCTttacgaggaaggggataaACTGGTACTCATGAACAAGCAAG
ACTTCACACAGATAGAGGTATCCCGCAATGTGCTCTCGGAAACGGAGCAA
AAATTTTTGCAGGAGGGCCTGACACTTCGCGTCCAGTTTCATGAAGGATC
TCCCCTTTTGGTACGGCTGCCAAGGACGCTGGTGGTTGAGGTAGCGAGCA
CGGAGCCCTTTAGCAAGGGAAGCCAGGCCAGCCCCACGTTTAAGCCTGCC
ACGCTGAGCAATGGAGAAGTCTTGAAGGTCCCGCCCTTTGTGGGGGTCGG
TGAGAAGGTGATAATTAATACCGAGGAAATGGAGTACCAATCGAGGGTGT
GAATGAATCTACTCCGCGCTAGCAACCTGGATGGAAGGCTTCATCAattc
ctcgtcttccatgCTTTTTCTCGTGCGAGGCCCCCCCTATCCTCCCAAGC
ATTCCCATCCGTCATCTATCATGCTAGACGGTGCTTTGCACAAATAAATG
GCAACCAAGTGCGAGTGGGAAATGTGTTGGAATACAAAGGGAAGCTTGTC
ATGGTGAAAAGGGCTCAAGCTGTCAAGCCAGGCAAGGGTGGCGCGTTCAA
TCAGGTCGAATTGAGGGACATCAGGACAGGCCTCAAGTACCACGAGCGGC
TACGAGCGTCGGAGAGTGTTGAAAAAGTCAGGCTAGACGATGAGGAGCTT
TACGATTACCTttacgaggaaggggataaACTGGTACTCATGAACAAGCA
AGACTTCACACAGATAGAGGTATCCCGCAATGTGCTCTCGGAAACGGAGC
AAAAATTTTTGCAGGAGGGCCTGACACTTCGCGTCCAGTTTCATGAAGGA
TCTCCCCTTTTGGTACGGCTGCCAAGGACGCTGGTGGTTGAGGTAGCGAG
CACGGAGCCCTTTAGCAAGGGAAGCCAGGCCAGCCCCACGTTTAAGCCTG
CCACGCTGAGCAATGGAGAAGTCTTGAAGGTCCCGCCCTTTGTGGGGGTC
GGTGAGAAGGTGATAATTAATACCGAGGAAATGGAGTACCAATCGAGGGT
GTGA

Synonyms

Publications