EWM29800.1, cds826 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29800.1 vs. NCBI_GenBank
Match: gi|553179653|ref|XP_005852737.1| (translation elongation factor p [Nannochloropsis gaditana CCMP526] >gi|422295793|gb|EKU23092.1| translation elongation factor p [Nannochloropsis gaditana CCMP526] >gi|585112381|gb|EWM29800.1| translation elongation factor p [Nannochloropsis gaditana]) HSP 1 Score: 476.093 bits (1224), Expect = 6.826e-170 Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0
Query: 1 MNLLRASNLDGRLHQFLVFHAFSRARPPLSSQAFPSVIYHARRCFAQINGNQVRVGNVLEYKGKLVMVKRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRASESVEKVRLDDEELYDYLYEEGDKLVLMNKQDFTQIEVSRNVLSETEQKFLQEGLTLRVQFHEGSPLLVRLPRTLVVEVASTEPFSKGSQASPTFKPATLSNGEVLKVPPFVGVGEKVIINTEEMEYQSRV 233
MNLLRASNLDGRLHQFLVFHAFSRARPPLSSQAFPSVIYHARRCFAQINGNQVRVGNVLEYKGKLVMVKRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRASESVEKVRLDDEELYDYLYEEGDKLVLMNKQDFTQIEVSRNVLSETEQKFLQEGLTLRVQFHEGSPLLVRLPRTLVVEVASTEPFSKGSQASPTFKPATLSNGEVLKVPPFVGVGEKVIINTEEMEYQSRV
Sbjct: 1 MNLLRASNLDGRLHQFLVFHAFSRARPPLSSQAFPSVIYHARRCFAQINGNQVRVGNVLEYKGKLVMVKRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRASESVEKVRLDDEELYDYLYEEGDKLVLMNKQDFTQIEVSRNVLSETEQKFLQEGLTLRVQFHEGSPLLVRLPRTLVVEVASTEPFSKGSQASPTFKPATLSNGEVLKVPPFVGVGEKVIINTEEMEYQSRV 233
BLAST of EWM29800.1 vs. NCBI_GenBank
Match: gi|1089064922|emb|SEA77980.1| (translation elongation factor P (EF-P) [Rubrimonas cliftonensis]) HSP 1 Score: 185.267 bits (469), Expect = 9.284e-56 Identity = 88/188 (46.81%), Postives = 131/188 (69.68%), Query Frame = 0
Query: 45 FAQINGNQVRVGNVLEYKGKLVMVKRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRASESVEKVRLDDEELYDYLYEEGDKLVLMNKQDFTQIEVSRNVLSETEQKFLQEGLTLRVQFHEGSPLLVRLPRTLVVEVASTEPFSKGSQASPTFKPATLSNGEVLKVPPFVGVGEKVIINTEEMEYQSR 232
A+INGN++R GN+LE+ G L + + VKPGKGGAF QVEL++IR G K +ER R+++ VE+VRL+ ++ +LY++ D LV M+ + F QIE+ ++L + + FLQ+G+T+ +++HE L LP ++ E+A TEP KG A+ +FKPATL NG + VPPFVG GE++++NTE EY R
Sbjct: 1 MAKINGNEIRPGNILEHDGGLWIAVKTDHVKPGKGGAFAQVELKNIRDGRKLNERFRSADKVERVRLEQKD-QQFLYQQEDMLVFMDAETFEQIELPADILGD-RRPFLQDGMTVTIEYHEAEALSAALPEKVICEIAETEPVVKGQTAANSFKPATLDNGVRVMVPPFVGAGERIVVNTETFEYVER 186
BLAST of EWM29800.1 vs. NCBI_GenBank
Match: gi|1140788866|ref|WP_076649273.1| (elongation factor P [Pontibaca methylaminivorans] >gi|1133978386|emb|SIT81950.1| translation elongation factor P (EF-P) [Pontibaca methylaminivorans]) HSP 1 Score: 184.111 bits (466), Expect = 2.818e-55 Identity = 90/189 (47.62%), Postives = 129/189 (68.25%), Query Frame = 0
Query: 45 FAQINGNQVRVGNVLEYKGKLVMVKRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRASESVEKVRLDDEELYDYLYEEGDKLVLMNKQDFTQIEVSRNVLSETEQKFLQEGLTLRVQFHEGSPLLVRLPRTLVVEVASTEPFSKGSQASPTFKPATLSNGEVLKVPPFVGVGEKVIINTEEMEYQSRV 233
A+INGN++R GNVLE+ G L + +A+ VKPGKGGAF QVELR++R G K +ER R+++ VE+VRL+ ++ +LYE L+ M+ Q + Q+E+ ++L E + FLQ+G+T++V+FHE L LP+ + V TEP KG A+ +FKPATL NG + VPPFVG E +++NTE MEY R
Sbjct: 1 MAKINGNEIRPGNVLEHNGGLWVAVKAEHVKPGKGGAFAQVELRNLRNGSKLNERFRSADKVERVRLEQRDM-QFLYENDGMLIFMDAQTYDQVELPSDILGE-RRPFLQDGMTIQVEFHEQEALNATLPQKVTCRVDETEPVVKGQTAANSFKPATLDNGIKIMVPPFVGPDEDIVVNTETMEYSERA 187
BLAST of EWM29800.1 vs. NCBI_GenBank
Match: gi|1119857900|ref|WP_072747852.1| (elongation factor P [Pleomorphobacterium xiamenense] >gi|1094341404|emb|SET72099.1| translation elongation factor P (EF-P) [Pleomorphobacterium xiamenense] >gi|1109828550|emb|SHN72139.1| elongation factor P [Pleomorphobacterium xiamenense]) HSP 1 Score: 182.57 bits (462), Expect = 9.444e-55 Identity = 92/186 (49.46%), Postives = 129/186 (69.35%), Query Frame = 0
Query: 47 QINGNQVRVGNVLEYKGKLVMVKRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRASESVEKVRLDDEELYDYLYEEGDKLVLMNKQDFTQIEVSRNVLSETEQKFLQEGLTLRVQFHEGSPLLVRLPRTLVVEVASTEPFSKGSQASPTFKPATLSNGEVLKVPPFVGVGEKVIINTEEMEYQSR 232
+INGN++R GN++E+ G L + + Q VKPGKGGAF QVEL+++R G K +ER R+++ VE+VRL+ ++ +LYE LV M+ + F QIE+ ++L E + FLQ+G+T+ V++HE L V LP +V VA TEP KG A+ +FKPA L NG + VPPFVGVGE V++NTE MEY R
Sbjct: 2 KINGNEIRPGNIIEHDGGLWVAVKTQHVKPGKGGAFAQVELKNLRDGRKLNERFRSADKVERVRLEQKD-QQFLYENDGMLVFMDAETFEQIELPADLLGE-RRPFLQDGMTVVVEYHESEALNVTLPEKVVCTVADTEPVVKGQTAANSFKPAVLDNGVRIMVPPFVGVGEAVVVNTETMEYVER 185
BLAST of EWM29800.1 vs. NCBI_GenBank
Match: gi|654341534|ref|WP_027834984.1| (elongation factor P [Maritalea myrionectae]) HSP 1 Score: 182.185 bits (461), Expect = 1.351e-54 Identity = 88/186 (47.31%), Postives = 131/186 (70.43%), Query Frame = 0
Query: 47 QINGNQVRVGNVLEYKGKLVMVKRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRASESVEKVRLDDEELYDYLYEEGDKLVLMNKQDFTQIEVSRNVLSETEQKFLQEGLTLRVQFHEGSPLLVRLPRTLVVEVASTEPFSKGSQASPTFKPATLSNGEVLKVPPFVGVGEKVIINTEEMEYQSR 232
++NGN++R GNV+++KG L + + Q+VKPGKGGAF QVEL+DI +G K +ER RA+E+VEKVRL+ ++ Y +LY +GD LV M+ + + Q+E+ + + FLQ+G+ + V+ HEG PL + LP+ + + VA TEP KG A+ +FKPA L NG + VPPFVG EK++++T E+ Y R
Sbjct: 2 KLNGNEIRPGNVIQHKGALWVAVKVQSVKPGKGGAFAQVELKDIVSGTKLNERFRAAETVEKVRLEQKD-YQFLYAQGDMLVFMDNESYEQLELPIEFVGD-RADFLQDGMNVTVESHEGKPLGISLPQFVTLAVAETEPVVKGQTAANSFKPAILENGIKVMVPPFVGQDEKIVVDTNEITYSKR 185
BLAST of EWM29800.1 vs. NCBI_GenBank
Match: gi|740753849|ref|WP_038539133.1| (elongation factor P [endosymbiont of Acanthamoeba sp. UWC8] >gi|665991574|gb|AIF81335.1| elongation factor P [endosymbiont of Acanthamoeba sp. UWC8]) HSP 1 Score: 182.185 bits (461), Expect = 1.790e-54 Identity = 86/186 (46.24%), Postives = 129/186 (69.35%), Query Frame = 0
Query: 47 QINGNQVRVGNVLEYKGKLVMVKRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRASESVEKVRLDDEELYDYLYEEGDKLVLMNKQDFTQIEVSRNVLSETEQKFLQEGLTLRVQFHEGSPLLVRLPRTLVVEVASTEPFSKGSQASPTFKPATLSNGEVLKVPPFVGVGEKVIINTEEMEYQSR 232
+I+ N +RVG+VLEY GKL +V++ +PGKGGA+ QVE++D+ G K + R R+SE++EKVRLD ++ + +LY EGD L LM+ + + QI + + ++ E + FLQ+G+ + V+F+E PL + LP TLVV V EP KG A+ ++KPA L NG + VPPF+ +GEK++I T E+EY R
Sbjct: 2 KIDANSIRVGDVLEYNGKLWVVQKTMHTQPGKGGAYMQVEMKDMINGTKLNHRFRSSENIEKVRLDQKK-FQFLYMEGDNLALMDNESYEQIYIDKEIVGE-QVVFLQDGMEVNVEFYEDKPLTISLPETLVVTVKECEPVVKGQTAASSYKPAILENGVRVMVPPFISMGEKIVIKTAEIEYLER 185
BLAST of EWM29800.1 vs. NCBI_GenBank
Match: gi|557678732|ref|WP_023433030.1| (elongation factor P [Lutibaculum baratangense] >gi|557403504|gb|ESR23677.1| Translation elongation factor P [Lutibaculum baratangense AMV1]) HSP 1 Score: 181.8 bits (460), Expect = 2.134e-54 Identity = 87/186 (46.77%), Postives = 132/186 (70.97%), Query Frame = 0
Query: 47 QINGNQVRVGNVLEYKGKLVMVKRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRASESVEKVRLDDEELYDYLYEEGDKLVLMNKQDFTQIEVSRNVLSETEQKFLQEGLTLRVQFHEGSPLLVRLPRTLVVEVASTEPFSKGSQASPTFKPATLSNGEVLKVPPFVGVGEKVIINTEEMEYQSR 232
+INGN++R GNV+E+ G L + + QAVKPGKGGAFNQVEL+++ G K +ER RASE+VE+VRLD ++ + +LY EG+ LV M+ + Q+E++R+ + E FLQ+G+ + V+ +EG P+ + LP+ + + VA +P KG A+ ++KPA L NG + VPPFV GE+V+++TEE+ Y R
Sbjct: 2 KINGNEIRPGNVIEHDGGLWVAVKTQAVKPGKGGAFNQVELKNLINGTKLNERFRASETVERVRLDQKD-FQFLYAEGENLVFMDSDTYEQLELARDWVGE-RAAFLQDGMVVTVEMYEGRPIGISLPQQVTLGVAEADPVVKGQTAASSYKPAVLENGVRILVPPFVESGERVVVDTEELTYVRR 185
BLAST of EWM29800.1 vs. NCBI_GenBank
Match: gi|743693626|gb|KIE04771.1| (Elongation factor P [Candidatus Jidaibacter acanthamoeba]) HSP 1 Score: 181.415 bits (459), Expect = 3.149e-54 Identity = 85/186 (45.70%), Postives = 129/186 (69.35%), Query Frame = 0
Query: 47 QINGNQVRVGNVLEYKGKLVMVKRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRASESVEKVRLDDEELYDYLYEEGDKLVLMNKQDFTQIEVSRNVLSETEQKFLQEGLTLRVQFHEGSPLLVRLPRTLVVEVASTEPFSKGSQASPTFKPATLSNGEVLKVPPFVGVGEKVIINTEEMEYQSR 232
+I+ N +RVG+VLEY GKL +V++ +PGKGGA+ QVE++D+ G K + R R++E++EKVRLD ++ + +LY EGD L LM+ + + QI + + ++ E + FLQ+G+ + V+F+E PL + LP TLVV V EP KG A+ ++KPA L NG + VPPF+ +GEK++I T E+EY R
Sbjct: 3 KIDANSIRVGDVLEYNGKLWVVQKTMHTQPGKGGAYMQVEMKDMINGTKLNNRFRSNENIEKVRLDQKK-FQFLYMEGDNLALMDNESYEQIYIDKEIVGE-QVVFLQDGMEVNVEFYEDKPLTISLPETLVVTVKECEPVVKGQTAASSYKPAILENGVRIMVPPFISMGEKIVIKTAEIEYLER 186
BLAST of EWM29800.1 vs. NCBI_GenBank
Match: gi|1079636358|emb|SCW45520.1| (elongation factor P [Asticcacaulis taihuensis]) HSP 1 Score: 181.415 bits (459), Expect = 3.183e-54 Identity = 86/186 (46.24%), Postives = 132/186 (70.97%), Query Frame = 0
Query: 47 QINGNQVRVGNVLEYKGKLVMVKRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRASESVEKVRLDDEELYDYLYEEGDKLVLMNKQDFTQIEVSRNVLSETEQKFLQEGLTLRVQFHEGSPLLVRLPRTLVVEVASTEPFSKGSQASPTFKPATLSNGEVLKVPPFVGVGEKVIINTEEMEYQSR 232
+IN NQ++ G VLEY+ L V + + VKPGKGGAF QVEL+++ TG K +ERLR+ E+VE+V L+ E + YLYE+GD LV M++ ++ QI +S++ + E + ++L +G+ + ++FHE + + LP T+V+EV TEP KG AS ++KPA SNG + +PPF+GVGE+++++TE EY R
Sbjct: 3 KINANQIKPGQVLEYQNGLWTVVKTEHVKPGKGGAFAQVELKNLITGTKLNERLRSEETVERVTLEQRE-HSYLYEDGDMLVFMDQNNYEQISLSKDWVGEDQVQYLHDGMIVTIEFHEERAIGMTLPDTVVLEVMETEPTIKGQTASSSYKPAKASNGMRVMIPPFMGVGERIVVSTETGEYMKR 187
BLAST of EWM29800.1 vs. NCBI_GenBank
Match: gi|746416806|ref|WP_039457760.1| (elongation factor P [Candidatus Jidaibacter acanthamoeba]) HSP 1 Score: 181.03 bits (458), Expect = 4.049e-54 Identity = 85/186 (45.70%), Postives = 129/186 (69.35%), Query Frame = 0
Query: 47 QINGNQVRVGNVLEYKGKLVMVKRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRASESVEKVRLDDEELYDYLYEEGDKLVLMNKQDFTQIEVSRNVLSETEQKFLQEGLTLRVQFHEGSPLLVRLPRTLVVEVASTEPFSKGSQASPTFKPATLSNGEVLKVPPFVGVGEKVIINTEEMEYQSR 232
+I+ N +RVG+VLEY GKL +V++ +PGKGGA+ QVE++D+ G K + R R++E++EKVRLD ++ + +LY EGD L LM+ + + QI + + ++ E + FLQ+G+ + V+F+E PL + LP TLVV V EP KG A+ ++KPA L NG + VPPF+ +GEK++I T E+EY R
Sbjct: 2 KIDANSIRVGDVLEYNGKLWVVQKTMHTQPGKGGAYMQVEMKDMINGTKLNNRFRSNENIEKVRLDQKK-FQFLYMEGDNLALMDNESYEQIYIDKEIVGE-QVVFLQDGMEVNVEFYEDKPLTISLPETLVVTVKECEPVVKGQTAASSYKPAILENGVRIMVPPFISMGEKIVIKTAEIEYLER 185 The following BLAST results are available for this feature:
BLAST of EWM29800.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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