EWM29800.1, cds826 (CDS) Nannochloropsis gaditana

Overview
NameEWM29800.1
Unique Namecds826
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:510575..510851 +
Alignment locationCM002456.1:511050..511474 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29800.1
Producttranslation elongation factor p
Orig transcript idgnl|cribi|Naga_100017g15.298.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:510575..510851 +
CM002456.1supercontigCM002456.1:511050..511474 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0003746translation elongation factor activity
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
GO:0043043peptide biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like
IPR013852Transl_elong_P/YeiP_CS
IPR001059Transl_elong_P/YeiP_cen
IPR014722Rib_L2_dom2
IPR012340NA-bd_OB-fold
IPR011768Transl_elongation_fac_P
IPR013185Transl_elong_KOW-like
IPR015365Elong-fact-P_C
Homology
BLAST of EWM29800.1 vs. NCBI_GenBank
Match: gi|553179653|ref|XP_005852737.1| (translation elongation factor p [Nannochloropsis gaditana CCMP526] >gi|422295793|gb|EKU23092.1| translation elongation factor p [Nannochloropsis gaditana CCMP526] >gi|585112381|gb|EWM29800.1| translation elongation factor p [Nannochloropsis gaditana])

HSP 1 Score: 476.093 bits (1224), Expect = 6.826e-170
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0
Query:    1 MNLLRASNLDGRLHQFLVFHAFSRARPPLSSQAFPSVIYHARRCFAQINGNQVRVGNVLEYKGKLVMVKRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRASESVEKVRLDDEELYDYLYEEGDKLVLMNKQDFTQIEVSRNVLSETEQKFLQEGLTLRVQFHEGSPLLVRLPRTLVVEVASTEPFSKGSQASPTFKPATLSNGEVLKVPPFVGVGEKVIINTEEMEYQSRV 233
            MNLLRASNLDGRLHQFLVFHAFSRARPPLSSQAFPSVIYHARRCFAQINGNQVRVGNVLEYKGKLVMVKRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRASESVEKVRLDDEELYDYLYEEGDKLVLMNKQDFTQIEVSRNVLSETEQKFLQEGLTLRVQFHEGSPLLVRLPRTLVVEVASTEPFSKGSQASPTFKPATLSNGEVLKVPPFVGVGEKVIINTEEMEYQSRV
Sbjct:    1 MNLLRASNLDGRLHQFLVFHAFSRARPPLSSQAFPSVIYHARRCFAQINGNQVRVGNVLEYKGKLVMVKRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRASESVEKVRLDDEELYDYLYEEGDKLVLMNKQDFTQIEVSRNVLSETEQKFLQEGLTLRVQFHEGSPLLVRLPRTLVVEVASTEPFSKGSQASPTFKPATLSNGEVLKVPPFVGVGEKVIINTEEMEYQSRV 233          
BLAST of EWM29800.1 vs. NCBI_GenBank
Match: gi|1089064922|emb|SEA77980.1| (translation elongation factor P (EF-P) [Rubrimonas cliftonensis])

HSP 1 Score: 185.267 bits (469), Expect = 9.284e-56
Identity = 88/188 (46.81%), Postives = 131/188 (69.68%), Query Frame = 0
Query:   45 FAQINGNQVRVGNVLEYKGKLVMVKRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRASESVEKVRLDDEELYDYLYEEGDKLVLMNKQDFTQIEVSRNVLSETEQKFLQEGLTLRVQFHEGSPLLVRLPRTLVVEVASTEPFSKGSQASPTFKPATLSNGEVLKVPPFVGVGEKVIINTEEMEYQSR 232
             A+INGN++R GN+LE+ G L +  +   VKPGKGGAF QVEL++IR G K +ER R+++ VE+VRL+ ++   +LY++ D LV M+ + F QIE+  ++L +  + FLQ+G+T+ +++HE   L   LP  ++ E+A TEP  KG  A+ +FKPATL NG  + VPPFVG GE++++NTE  EY  R
Sbjct:    1 MAKINGNEIRPGNILEHDGGLWIAVKTDHVKPGKGGAFAQVELKNIRDGRKLNERFRSADKVERVRLEQKD-QQFLYQQEDMLVFMDAETFEQIELPADILGD-RRPFLQDGMTVTIEYHEAEALSAALPEKVICEIAETEPVVKGQTAANSFKPATLDNGVRVMVPPFVGAGERIVVNTETFEYVER 186          
BLAST of EWM29800.1 vs. NCBI_GenBank
Match: gi|1140788866|ref|WP_076649273.1| (elongation factor P [Pontibaca methylaminivorans] >gi|1133978386|emb|SIT81950.1| translation elongation factor P (EF-P) [Pontibaca methylaminivorans])

HSP 1 Score: 184.111 bits (466), Expect = 2.818e-55
Identity = 90/189 (47.62%), Postives = 129/189 (68.25%), Query Frame = 0
Query:   45 FAQINGNQVRVGNVLEYKGKLVMVKRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRASESVEKVRLDDEELYDYLYEEGDKLVLMNKQDFTQIEVSRNVLSETEQKFLQEGLTLRVQFHEGSPLLVRLPRTLVVEVASTEPFSKGSQASPTFKPATLSNGEVLKVPPFVGVGEKVIINTEEMEYQSRV 233
             A+INGN++R GNVLE+ G L +  +A+ VKPGKGGAF QVELR++R G K +ER R+++ VE+VRL+  ++  +LYE    L+ M+ Q + Q+E+  ++L E  + FLQ+G+T++V+FHE   L   LP+ +   V  TEP  KG  A+ +FKPATL NG  + VPPFVG  E +++NTE MEY  R 
Sbjct:    1 MAKINGNEIRPGNVLEHNGGLWVAVKAEHVKPGKGGAFAQVELRNLRNGSKLNERFRSADKVERVRLEQRDM-QFLYENDGMLIFMDAQTYDQVELPSDILGE-RRPFLQDGMTIQVEFHEQEALNATLPQKVTCRVDETEPVVKGQTAANSFKPATLDNGIKIMVPPFVGPDEDIVVNTETMEYSERA 187          
BLAST of EWM29800.1 vs. NCBI_GenBank
Match: gi|1119857900|ref|WP_072747852.1| (elongation factor P [Pleomorphobacterium xiamenense] >gi|1094341404|emb|SET72099.1| translation elongation factor P (EF-P) [Pleomorphobacterium xiamenense] >gi|1109828550|emb|SHN72139.1| elongation factor P [Pleomorphobacterium xiamenense])

HSP 1 Score: 182.57 bits (462), Expect = 9.444e-55
Identity = 92/186 (49.46%), Postives = 129/186 (69.35%), Query Frame = 0
Query:   47 QINGNQVRVGNVLEYKGKLVMVKRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRASESVEKVRLDDEELYDYLYEEGDKLVLMNKQDFTQIEVSRNVLSETEQKFLQEGLTLRVQFHEGSPLLVRLPRTLVVEVASTEPFSKGSQASPTFKPATLSNGEVLKVPPFVGVGEKVIINTEEMEYQSR 232
            +INGN++R GN++E+ G L +  + Q VKPGKGGAF QVEL+++R G K +ER R+++ VE+VRL+ ++   +LYE    LV M+ + F QIE+  ++L E  + FLQ+G+T+ V++HE   L V LP  +V  VA TEP  KG  A+ +FKPA L NG  + VPPFVGVGE V++NTE MEY  R
Sbjct:    2 KINGNEIRPGNIIEHDGGLWVAVKTQHVKPGKGGAFAQVELKNLRDGRKLNERFRSADKVERVRLEQKD-QQFLYENDGMLVFMDAETFEQIELPADLLGE-RRPFLQDGMTVVVEYHESEALNVTLPEKVVCTVADTEPVVKGQTAANSFKPAVLDNGVRIMVPPFVGVGEAVVVNTETMEYVER 185          
BLAST of EWM29800.1 vs. NCBI_GenBank
Match: gi|654341534|ref|WP_027834984.1| (elongation factor P [Maritalea myrionectae])

HSP 1 Score: 182.185 bits (461), Expect = 1.351e-54
Identity = 88/186 (47.31%), Postives = 131/186 (70.43%), Query Frame = 0
Query:   47 QINGNQVRVGNVLEYKGKLVMVKRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRASESVEKVRLDDEELYDYLYEEGDKLVLMNKQDFTQIEVSRNVLSETEQKFLQEGLTLRVQFHEGSPLLVRLPRTLVVEVASTEPFSKGSQASPTFKPATLSNGEVLKVPPFVGVGEKVIINTEEMEYQSR 232
            ++NGN++R GNV+++KG L +  + Q+VKPGKGGAF QVEL+DI +G K +ER RA+E+VEKVRL+ ++ Y +LY +GD LV M+ + + Q+E+    + +    FLQ+G+ + V+ HEG PL + LP+ + + VA TEP  KG  A+ +FKPA L NG  + VPPFVG  EK++++T E+ Y  R
Sbjct:    2 KLNGNEIRPGNVIQHKGALWVAVKVQSVKPGKGGAFAQVELKDIVSGTKLNERFRAAETVEKVRLEQKD-YQFLYAQGDMLVFMDNESYEQLELPIEFVGD-RADFLQDGMNVTVESHEGKPLGISLPQFVTLAVAETEPVVKGQTAANSFKPAILENGIKVMVPPFVGQDEKIVVDTNEITYSKR 185          
BLAST of EWM29800.1 vs. NCBI_GenBank
Match: gi|740753849|ref|WP_038539133.1| (elongation factor P [endosymbiont of Acanthamoeba sp. UWC8] >gi|665991574|gb|AIF81335.1| elongation factor P [endosymbiont of Acanthamoeba sp. UWC8])

HSP 1 Score: 182.185 bits (461), Expect = 1.790e-54
Identity = 86/186 (46.24%), Postives = 129/186 (69.35%), Query Frame = 0
Query:   47 QINGNQVRVGNVLEYKGKLVMVKRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRASESVEKVRLDDEELYDYLYEEGDKLVLMNKQDFTQIEVSRNVLSETEQKFLQEGLTLRVQFHEGSPLLVRLPRTLVVEVASTEPFSKGSQASPTFKPATLSNGEVLKVPPFVGVGEKVIINTEEMEYQSR 232
            +I+ N +RVG+VLEY GKL +V++    +PGKGGA+ QVE++D+  G K + R R+SE++EKVRLD ++ + +LY EGD L LM+ + + QI + + ++ E +  FLQ+G+ + V+F+E  PL + LP TLVV V   EP  KG  A+ ++KPA L NG  + VPPF+ +GEK++I T E+EY  R
Sbjct:    2 KIDANSIRVGDVLEYNGKLWVVQKTMHTQPGKGGAYMQVEMKDMINGTKLNHRFRSSENIEKVRLDQKK-FQFLYMEGDNLALMDNESYEQIYIDKEIVGE-QVVFLQDGMEVNVEFYEDKPLTISLPETLVVTVKECEPVVKGQTAASSYKPAILENGVRVMVPPFISMGEKIVIKTAEIEYLER 185          
BLAST of EWM29800.1 vs. NCBI_GenBank
Match: gi|557678732|ref|WP_023433030.1| (elongation factor P [Lutibaculum baratangense] >gi|557403504|gb|ESR23677.1| Translation elongation factor P [Lutibaculum baratangense AMV1])

HSP 1 Score: 181.8 bits (460), Expect = 2.134e-54
Identity = 87/186 (46.77%), Postives = 132/186 (70.97%), Query Frame = 0
Query:   47 QINGNQVRVGNVLEYKGKLVMVKRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRASESVEKVRLDDEELYDYLYEEGDKLVLMNKQDFTQIEVSRNVLSETEQKFLQEGLTLRVQFHEGSPLLVRLPRTLVVEVASTEPFSKGSQASPTFKPATLSNGEVLKVPPFVGVGEKVIINTEEMEYQSR 232
            +INGN++R GNV+E+ G L +  + QAVKPGKGGAFNQVEL+++  G K +ER RASE+VE+VRLD ++ + +LY EG+ LV M+   + Q+E++R+ + E    FLQ+G+ + V+ +EG P+ + LP+ + + VA  +P  KG  A+ ++KPA L NG  + VPPFV  GE+V+++TEE+ Y  R
Sbjct:    2 KINGNEIRPGNVIEHDGGLWVAVKTQAVKPGKGGAFNQVELKNLINGTKLNERFRASETVERVRLDQKD-FQFLYAEGENLVFMDSDTYEQLELARDWVGE-RAAFLQDGMVVTVEMYEGRPIGISLPQQVTLGVAEADPVVKGQTAASSYKPAVLENGVRILVPPFVESGERVVVDTEELTYVRR 185          
BLAST of EWM29800.1 vs. NCBI_GenBank
Match: gi|743693626|gb|KIE04771.1| (Elongation factor P [Candidatus Jidaibacter acanthamoeba])

HSP 1 Score: 181.415 bits (459), Expect = 3.149e-54
Identity = 85/186 (45.70%), Postives = 129/186 (69.35%), Query Frame = 0
Query:   47 QINGNQVRVGNVLEYKGKLVMVKRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRASESVEKVRLDDEELYDYLYEEGDKLVLMNKQDFTQIEVSRNVLSETEQKFLQEGLTLRVQFHEGSPLLVRLPRTLVVEVASTEPFSKGSQASPTFKPATLSNGEVLKVPPFVGVGEKVIINTEEMEYQSR 232
            +I+ N +RVG+VLEY GKL +V++    +PGKGGA+ QVE++D+  G K + R R++E++EKVRLD ++ + +LY EGD L LM+ + + QI + + ++ E +  FLQ+G+ + V+F+E  PL + LP TLVV V   EP  KG  A+ ++KPA L NG  + VPPF+ +GEK++I T E+EY  R
Sbjct:    3 KIDANSIRVGDVLEYNGKLWVVQKTMHTQPGKGGAYMQVEMKDMINGTKLNNRFRSNENIEKVRLDQKK-FQFLYMEGDNLALMDNESYEQIYIDKEIVGE-QVVFLQDGMEVNVEFYEDKPLTISLPETLVVTVKECEPVVKGQTAASSYKPAILENGVRIMVPPFISMGEKIVIKTAEIEYLER 186          
BLAST of EWM29800.1 vs. NCBI_GenBank
Match: gi|1079636358|emb|SCW45520.1| (elongation factor P [Asticcacaulis taihuensis])

HSP 1 Score: 181.415 bits (459), Expect = 3.183e-54
Identity = 86/186 (46.24%), Postives = 132/186 (70.97%), Query Frame = 0
Query:   47 QINGNQVRVGNVLEYKGKLVMVKRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRASESVEKVRLDDEELYDYLYEEGDKLVLMNKQDFTQIEVSRNVLSETEQKFLQEGLTLRVQFHEGSPLLVRLPRTLVVEVASTEPFSKGSQASPTFKPATLSNGEVLKVPPFVGVGEKVIINTEEMEYQSR 232
            +IN NQ++ G VLEY+  L  V + + VKPGKGGAF QVEL+++ TG K +ERLR+ E+VE+V L+  E + YLYE+GD LV M++ ++ QI +S++ + E + ++L +G+ + ++FHE   + + LP T+V+EV  TEP  KG  AS ++KPA  SNG  + +PPF+GVGE+++++TE  EY  R
Sbjct:    3 KINANQIKPGQVLEYQNGLWTVVKTEHVKPGKGGAFAQVELKNLITGTKLNERLRSEETVERVTLEQRE-HSYLYEDGDMLVFMDQNNYEQISLSKDWVGEDQVQYLHDGMIVTIEFHEERAIGMTLPDTVVLEVMETEPTIKGQTASSSYKPAKASNGMRVMIPPFMGVGERIVVSTETGEYMKR 187          
BLAST of EWM29800.1 vs. NCBI_GenBank
Match: gi|746416806|ref|WP_039457760.1| (elongation factor P [Candidatus Jidaibacter acanthamoeba])

HSP 1 Score: 181.03 bits (458), Expect = 4.049e-54
Identity = 85/186 (45.70%), Postives = 129/186 (69.35%), Query Frame = 0
Query:   47 QINGNQVRVGNVLEYKGKLVMVKRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRASESVEKVRLDDEELYDYLYEEGDKLVLMNKQDFTQIEVSRNVLSETEQKFLQEGLTLRVQFHEGSPLLVRLPRTLVVEVASTEPFSKGSQASPTFKPATLSNGEVLKVPPFVGVGEKVIINTEEMEYQSR 232
            +I+ N +RVG+VLEY GKL +V++    +PGKGGA+ QVE++D+  G K + R R++E++EKVRLD ++ + +LY EGD L LM+ + + QI + + ++ E +  FLQ+G+ + V+F+E  PL + LP TLVV V   EP  KG  A+ ++KPA L NG  + VPPF+ +GEK++I T E+EY  R
Sbjct:    2 KIDANSIRVGDVLEYNGKLWVVQKTMHTQPGKGGAYMQVEMKDMINGTKLNNRFRSNENIEKVRLDQKK-FQFLYMEGDNLALMDNESYEQIYIDKEIVGE-QVVFLQDGMEVNVEFYEDKPLTISLPETLVVTVKECEPVVKGQTAASSYKPAILENGVRIMVPPFISMGEKIVIKTAEIEYLER 185          
The following BLAST results are available for this feature:
BLAST of EWM29800.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553179653|ref|XP_005852737.1|6.826e-170100.00translation elongation factor p [Nannochloropsis g... [more]
gi|1089064922|emb|SEA77980.1|9.284e-5646.81translation elongation factor P (EF-P) [Rubrimonas... [more]
gi|1140788866|ref|WP_076649273.1|2.818e-5547.62elongation factor P [Pontibaca methylaminivorans] ... [more]
gi|1119857900|ref|WP_072747852.1|9.444e-5549.46elongation factor P [Pleomorphobacterium xiamenens... [more]
gi|654341534|ref|WP_027834984.1|1.351e-5447.31elongation factor P [Maritalea myrionectae][more]
gi|740753849|ref|WP_038539133.1|1.790e-5446.24elongation factor P [endosymbiont of Acanthamoeba ... [more]
gi|557678732|ref|WP_023433030.1|2.134e-5446.77elongation factor P [Lutibaculum baratangense] >gi... [more]
gi|743693626|gb|KIE04771.1|3.149e-5445.70Elongation factor P [Candidatus Jidaibacter acanth... [more]
gi|1079636358|emb|SCW45520.1|3.183e-5446.24elongation factor P [Asticcacaulis taihuensis][more]
gi|746416806|ref|WP_039457760.1|4.049e-5445.70elongation factor P [Candidatus Jidaibacter acanth... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna826rna826Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications