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Properties
| Property Name | Value |
|---|
| Product | SWAP/Surp |
| Orig transcript id | gnl|cribi|Naga_100011g62.3494.mrna |
| Orig protein id | gnl|cribi|Naga_100011g62.3494 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037248.1 | supercontig | KK037248.1:188929..191753 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8252 ID=rna8252|Name=rna8252|organism=Nannochloropsis gaditana|type=mRNA|length=2878bp
GGGCCGCTCTCTCGGATCACCCCATCCTGTCATCTAACTGAACCTCAACG
ATCGCTTTTAGGCTCCTTTTTTGAGTGCCATACTTCGCGTATGTGGTCCA
AGCTTAGCTCCGAATTGCTTGGAAAGGAAACTCAAGATGCTTTGACGGAT
GCCTTACAAAAAGGCAAGCAGGCTTGGCAGTCAATTGAGCAGTCGCTGGA
TCAAGCCGTAGATGCGGACACGGTAGTTTCCAAGGAAAGCACACTGCCAA
TCTCTATCCCCTACATTTCTACACCCGAGGCTCTTGATTCGCCTTGTGCC
GATGCTGTGGCAAAGGCCGATCCGTGTTTGGAGGAGCAAATCGAGTATGA
AGGAACCACGCAAAACTTGTCCCCTCAGTCATGCGTAACGACATGTAATT
TAGCTTTGGCCGCCGACAATGCTACAGAAATAGGACACGTGGGCATAGGA
AATACCTTAACAGCTTACGATAGTCCAAAATCTATTGATCTAGCTCTTAA
ATCTAGTCGTGCGCTCGCTAATTCGATGGAACTTAAAGTCAAAGGCGAAC
GAGACGATCGGGGGAAAGACAACATAAGTCCAGCTCCAATTGTTGCCACG
CCTACTGGTGATTGCGACGCTGAAGGAGATCTCGAGGGCTCGACACATTC
AGGTTCATGTCAAGCTGAGAAGGAGGCACGGGGGTTGAGACTGGACACGA
GCACCGAGAGCAATGGAGCTGTTGAAAGTAGTTGCCCAGAACCGAATCGA
TCTCAGTCGACCACTGCCCCCGCCGGGAATGGAGATCGTGACATCCAGTC
GACAGCATCCAGCCCCCTCGAGCTGACACTTACCCCTGCCATAAGTAATT
TTACATCCATTGCTACAGCTGTGCCCGCAGATGGCTTTCAAAGGGAGCGA
GAGCACTTGCAGAGGGAATTAAGGGAGTCTCAGGGTCGGGTGCAAGCCTT
GGAGAATGAGATCAGAAAAGCCCAGGCGATTTACATGAGCGAGGAGGCCA
AACAACGGCAAATTCATGCATTGCAAGAGGAGGGCAAGGCGTTGGCATTC
AAGCAGTCTGAAATGGAGCAACTGGTACGCAAAAGCCGTGCAGAATTGAA
AAAGGTAGAATCGGAAAGGTCGCAGCTGCAAGAGTCGAATGAGGCTCACA
AAAGAGAAATGGTAACACTGAGGGAGCAGCTTCGCGCCTCAGAGACGGAG
AAGAACCTGCTGGCACAGAGCCTGTCGGCGGTCCAGGCCGTCAACAAGTC
AGCGGCTGAGAAGACGTCGAAGTTGGAGCAAGAGCTCAGCCACGCACAGG
TAGAGATCAGCAGCCAGCATGAATCTTTACAGAAGGCATGGGAGGAGGAG
AAGGAAATGAAGCGAATGATTTCGGAAATGACTGCGTCGGAGAGCGGGGT
CAAGGACTTGCAAGACCCGGGGAAGGCTCTCTCGCGCGGTCTGGCCGGGA
TCAAGGACGACTTCGAGCGGCGCGAGGCGGTCCTACAAGCCACGAATAAG
CAGCTACAAGAGGCATTGACTCGCGCAAGCCTGGAGGCAGGCCTGCGTGA
AGACAGTCTGCGACAAGAACTTGCAGAGATGCGAAGGCGGTGGCAGGACG
CTGTCTCTCGCACGGAGGGCATGGCATCCGACGTGCACGAGGCGACCGTG
CCGCTGCTCCGACAGATCAAGGCCCTGCAGGAAGAGGCTCGAGGACGGGC
AGCTGCCTGGGCCAGCGCGGAGGAGGCCTTGACGGATAGAGCGCGGGGGG
CTGAGGGCTTGGCACGCACAGCGGAGGCGGAGCGGCTGGAGCTGGGCGGG
AGGGTGGAGGGTCTCAGGACGAGAATAGAGGACCTCGACGTCCAACTTCG
GTACGCATAGAAGCGTGAGGGCATGGCCAGTCATGCAACTTAGGAGCTGG
CGATTGACGATCTTACCCTTTAGACGAGTTCACGCGCTTCACCTCTGTCC
GCCCTTACACAGCGCCACTACCCTCAAGCTGCATGAGACAGCGGCCCATC
TCAAGACAGTCGAGGCCAGAGAGGCCGAGAGCCGAAACAGGACTTTGGAG
GTCGAGCAAGAGCTGAAGGCCGCTGAGGACAGGCTGTCTCACGCAAGCAA
AGAGAAAAAAAGTCAGGAGACCATGTTGAAGAGGAAGTTGCAAGAGGGCA
AGGACGCCTTGCTGGTGATGAAGAGTGAATTCGAGCACGAGGAGGCCAGG
CTTAAGCTCGAGGTGGAAACTTTGGAGAAGAAGTTGGCCGCACAAATGGC
GGCACAAGAGCGGACTCAAGCGTTACACCAAAGCGCACTTGAAAAGGGTT
CTTTGTCAAATAGCAGGCCCCACGCTTCCTCCCACGCGAGGCTATCGCAG
AATTCCATATTAGAACTTACCCTTTCAGGTTATATGAGCAGTGATGAGAG
CACCAATAGTGTTGCTGACCGATTAAAAGGAAGTGTGGGATCGCAATACA
TCCTTGCCTCCGAGAAAATGCATCAAGCTTTACGGCAGAAGGAGACCGAG
ATACAGCATTTGCAGTCGCGCTTGCACGATCTGGAACGTACAAGGGATGC
TTTGACAGAAGAAGTAACAGTACTCGGTCGACAAAATTCTTTACAGGCTG
CCAAAGCGATGCGCTCAGCCGCAGAGGTAGCCAAATTAAGAGGCTTGTCG
AAGGAGAAGGAAGTGTTATTGGAGCTTCTCGGTGAGAAAACCGAGGAAGT
CGAGGCGCTGGAGGCAGAGACGGAGAGCCTCAAAGCCCGCTTCCGCTGCC
AGCTCGACCAGCCGCCGCACAGCTCTCAAGGACAAAAAGAAAAGGACAAG
CAGCCATCAGACGCTTTTTCGACTTAAAAGAGGAACGTCTTTGTAGCATC
AAAGTAATCACACGTGTAATTGAATTCC back to topprotein sequence of rna8252 >rna8252-protein ID=rna8252-protein|Name=rna8252|organism=Nannochloropsis gaditana|type=polypeptide|length=810bp
MAEAPVKEEASTGVALDDADVENEIIQGRSGKVTGIIYPPPDIRAVVDKT
AQWVARNGKSFEQRILSSEEGKSSKFNFMKPGDPYNAYYEHRIRQFEEGK
GEGPAEKKAKIAEVSPPAAGETRDGKAVADTGETPTAVSAAPTTTVSKAS
VLGPIAKAALHKPEAPPPPQEFYISHPDGLNPLDVEIIKLTAQYTAASGR
QFLAALAQREQRNPLFEFLKPSHILFSYFTTLVDAYIKVLQPTDSQRAMV
RQGLETQKVLERAVHRWVHEKDEEQRKKQQQAEQEAERVAYQSVDWHDFV
VVETITFAEDELLDVGMPEVGGGRANGEVSEDEGEDMELEEEEEALPLPP
PPRPPVPPPRPAAGEERGPGQEGEEDMDLDEGEIKVVSSYKPRVAAGGGA
ARPEVMLDPVTGKEVPIADVGEHMRIQFLDPRWRDEQRRALEKRKESALA
EGGDIAANVRSFAKKRTDIFGTSEEEERQILADQERFRARQEENQRMIWQ
GGTGGQGTLGPGRAPGPSPVASSEPRPGFPQQTNSFAQPPAPAPSQARGP
VPPVSSSLLKNTLAGGAGASSFPAPPRGPPGGPPPGPPSWSASTATTTLG
TGAATATATATATPSAAATAAAAAGKAACSHHTDPGRLEFGRRRGGEREG
LGGGAKAYFAFRVRVCLCEYRGWFHQHTGASGRERRDLELEGTACEAGDR
ECDVYGQGSEGAALAPPRRDAAEQNAVAKCGAGGVSEGCTDSCLLQSGRS
GLVYRLGARDSLQGGPEVSWEMVRVCLRQTRAQVPGLTLLLWAGHICTSP
GIPTRVACIR back to topmRNA from alignment at KK037248.1:188929..191753+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8252 ID=rna8252|Name=rna8252|organism=Nannochloropsis gaditana|type=mRNA|length=2825bp|location=Sequence derived from alignment at KK037248.1:188929..191753+ (Nannochloropsis gaditana)
ACGAAAGTTGGACATCACATGGGTAACGAGGTATTCGCTTGCCAGACAAT
TCAGCACACAGCATTGCCAGTCCTTAAGAACAGTAGATTTCTGTCTTTCC
GAATCGGGCAGCCATCGATAGATGATTCTTGAGCCTCCTGGCTCGTCTCC
AGTTAACTTACGAGAAGTCGATACCATGACTTTCATTGATATTAACGAAC
TTAATACGTCCACTTTAGGTCTGTACATCACTGGCGAAGGTTAAACATCC
ACTGGCGCGAGTGGTATGGCGGAAGCGCCTgtaaaggaagaagcaagtAC
AGGCGTAGCTCTGGACGATGCCGATGTGGAAAATGAGATTATCCAAGGAC
GTTCGGGAAAAGTGACGGGCATAATCTACCCACCGCCTGACATACGGGCA
GTAGTGGATAAAACGGCGCAATGGGTGGCTCGTAACGGTAAAAGCTTTGA
GCAACGCATTTTAAGCAGCGAGGAAGGCAAGAGCTCGAAGTTTAACTTCA
TGAAACCAGGAGACCCCTACAACGCGTACTACGAGCACAGGATCCGACAA
TtcgaagaagggaagggagaagggcctGCTGAGAAGAAAGCGAAAATAGC
AGAAGTGTCTCCCCCAGCGGCTGGAGAGACGCGGGATGGGAAAGCGGTTG
CCGATACGGGGGAGACACCGACGGCTGTTAGCGCGGCCCCGACCACGACA
GTCAGCAAGGCCTCCGTGCTGGGCCCCATCGCCAAGGCGGCATTGCACAA
ACCAGAagctccaccaccgccacagGAATTCTATATCTCGCATCCTGACG
GGCTGAATCCCCTCGACGTGGAGATCATCAAGCTTACCGCCCAGTACACA
GCAGCAAGCGGGCGCCAGTTCCTCGCGGCCCTGGCTCAAAGAGAGCAGCG
GAACCCCTTGTTCGAGTTCCTAAAGCCCTCGCATATTCTATTCAGCTACT
TCACCACCCTTGTAGACGCCTACATCAAGGTGCTGCAGCCCACGGACTCG
CAGCGCGCCATGGTGAGGCAGGGGCTGGAGACGCAGAAGGTGCTGGAGCG
GGCGGTCCACCGGTGGGTgcacgagaaggacgaggagcagcgtaagaagc
agcagcaggcggagcaggaggcggaaCGCGTGGCATACCAGTCTGTGGAC
TGGCACGACttcgtggtggtggagaccaTCACGTtcgcggaggacgagct
CCTGGACGTGGGGATgccggaggtggggggggggcgcgcgAACGGAGAGG
TGtcagaggacgagggcgaggacatggagttggaggaagaagaagaagcg
ctgcccctccccccgcccccacgacCGCCAGTCCCGCCTCCGCGcccggc
ggcgggggaagaaagagggccggggcaggaaggggaggaggatatggacc
tggacgagggcgagatCAAGGTGGTGTCCTCCTACAAGCCGCGCGTGGCg
gccgggggcggagcgGCGAGACCGGAGGTGATGCTGGACCCGGTAACCGG
CAAGGAAGTCCCGATCGCGGACGTGGGCGAGCACATGCGCATCCAGTTCT
TAGACCCTCGGTGGCGAGACGAGCAGCGGCGGGCtctggagaagaggaag
gagtcgGCGCTagcagaggggggggacatcGCGGCCAACGTGCGGAGCTT
cgccaagaagaggacggacATCTTCGGGacctcggaggaggaggaacggc
agATCCTCGCGGACCAGGAACGTTTCCGAGCCAGACAGGAGGAGAATCAG
CGCATGATCTGGCAAGGTggcacgggggggcaggggacgTTAGGGCCGGG
CAGGGCGCCGGGGCCGTCTCCAGTGGCCTCCTCAGAGCCACGCCCGGGCT
TCCCCCAGCAAACCAACTCCTTCGCACAGCCTCCAGCCCCGGCGCCTTCC
CAAGCTCGAGGACCCGTCCCCCCGGTatcttcctctctgctcAAGAACAC
CttggcgggcggggccggagcAAGCagcttccctgccccgccacgCGGGC
CTCCTGGGGGCCCGCCGCCAGGCCCCCCCTCGTGGTCTGCCTCaaccgcc
accaccacccttgGCACAggcgcagcaacagcaacagcaacagcaacagc
aacaccaagcgcagcagccacagcagccgccgccgccggcaaGGCCGCCT
GTTCCCATCATACCGACCCTGGGCGCCTCGAATTTGGTCGTcggagaggc
ggagaaagagaaggtctcggaggaggagcaaaagcCTACTTTGCTTTCCG
AGTCCGCGTATGCCTCTGCGAATACAGGGGCTGGTTCCATCAGCATACAG
GCGCCTCAGGACGAGAGCGCCGCGACCTGGAACTTGAAGGGACAGCTTGT
GAAGCTGGAGATCGGGAGTGTGATGTCTACGGTCagggaagtgaaggagc
agctctcgcccctcctaGGAGGGATGCCGCCGAACAAAATGCAGTTGCGA
AATGCGGAGCAGGGGGTGTTTCTGAAGGATGCACAGACTCTTGCCTCCTA
CAATCTGGGCGCAGCGGGCTCGTCTACCGTCTTGGAGCTCGTGACTCGCT
CCAGGGGGGGCCGGAAGTAAGCTGGGAAATGGTCAGGGTCTGCTTGAGGC
AAACGCGAGCGCAAGTGCCTGGCTTGACATTGCTTCTGTGGGCGGGTCAT
ATTTGTACGAGTCCTGGGATTCCTACGCGCGTCGCGTGCATCCGATAGGT
GTAGATTTATCAACGGAGGTATTGGCGATTGGGCTGAAACTTACCTGTTC
AAATCGCAGGTTGCAAGTAGAAAGACAGGATAAGTCAATCTTCCAAAGAA
AAGGTGTTGCGAAATGAGCTTTCTA back to topCoding sequence (CDS) from alignment at KK037248.1:188929..191753+ >rna8252 ID=rna8252|Name=rna8252|organism=Nannochloropsis gaditana|type=CDS|length=2433bp|location=Sequence derived from alignment at KK037248.1:188929..191753+ (Nannochloropsis gaditana)
ATGGCGGAAGCGCCTgtaaaggaagaagcaagtACAGGCGTAGCTCTGGA
CGATGCCGATGTGGAAAATGAGATTATCCAAGGACGTTCGGGAAAAGTGA
CGGGCATAATCTACCCACCGCCTGACATACGGGCAGTAGTGGATAAAACG
GCGCAATGGGTGGCTCGTAACGGTAAAAGCTTTGAGCAACGCATTTTAAG
CAGCGAGGAAGGCAAGAGCTCGAAGTTTAACTTCATGAAACCAGGAGACC
CCTACAACGCGTACTACGAGCACAGGATCCGACAATtcgaagaagggaag
ggagaagggcctGCTGAGAAGAAAGCGAAAATAGCAGAAGTGTCTCCCCC
AGCGGCTGGAGAGACGCGGGATGGGAAAGCGGTTGCCGATACGGGGGAGA
CACCGACGGCTGTTAGCGCGGCCCCGACCACGACAGTCAGCAAGGCCTCC
GTGCTGGGCCCCATCGCCAAGGCGGCATTGCACAAACCAGAagctccacc
accgccacagGAATTCTATATCTCGCATCCTGACGGGCTGAATCCCCTCG
ACGTGGAGATCATCAAGCTTACCGCCCAGTACACAGCAGCAAGCGGGCGC
CAGTTCCTCGCGGCCCTGGCTCAAAGAGAGCAGCGGAACCCCTTGTTCGA
GTTCCTAAAGCCCTCGCATATTCTATTCAGCTACTTCACCACCCTTGTAG
ACGCCTACATCAAGGTGCTGCAGCCCACGGACTCGCAGCGCGCCATGGTG
AGGCAGGGGCTGGAGACGCAGAAGGTGCTGGAGCGGGCGGTCCACCGGTG
GGTgcacgagaaggacgaggagcagcgtaagaagcagcagcaggcggagc
aggaggcggaaCGCGTGGCATACCAGTCTGTGGACTGGCACGACttcgtg
gtggtggagaccaTCACGTtcgcggaggacgagctCCTGGACGTGGGGAT
gccggaggtggggggggggcgcgcgAACGGAGAGGTGtcagaggacgagg
gcgaggacatggagttggaggaagaagaagaagcgctgcccctccccccg
cccccacgacCGCCAGTCCCGCCTCCGCGcccggcggcgggggaagaaag
agggccggggcaggaaggggaggaggatatggacctggacgagggcgaga
tCAAGGTGGTGTCCTCCTACAAGCCGCGCGTGGCggccgggggcggagcg
GCGAGACCGGAGGTGATGCTGGACCCGGTAACCGGCAAGGAAGTCCCGAT
CGCGGACGTGGGCGAGCACATGCGCATCCAGTTCTTAGACCCTCGGTGGC
GAGACGAGCAGCGGCGGGCtctggagaagaggaaggagtcgGCGCTagca
gaggggggggacatcGCGGCCAACGTGCGGAGCTTcgccaagaagaggac
ggacATCTTCGGGacctcggaggaggaggaacggcagATCCTCGCGGACC
AGGAACGTTTCCGAGCCAGACAGGAGGAGAATCAGCGCATGATCTGGCAA
GGTggcacgggggggcaggggacgTTAGGGCCGGGCAGGGCGCCGGGGCC
GTCTCCAGTGGCCTCCTCAGAGCCACGCCCGGGCTTCCCCCAGCAAACCA
ACTCCTTCGCACAGCCTCCAGCCCCGGCGCCTTCCCAAGCTCGAGGACCC
GTCCCCCCGGTatcttcctctctgctcAAGAACACCttggcgggcggggc
cggagcAAGCagcttccctgccccgccacgCGGGCCTCCTGGGGGCCCGC
CGCCAGGCCCCCCCTCGTGGTCTGCCTCaaccgccaccaccacccttgGC
ACAggcgcagcaacagcaacagcaacagcaacagcaacaccaagcgcagc
agccacagcagccgccgccgccggcaaGGCCGCCTGTTCCCATCATACCG
ACCCTGGGCGCCTCGAATTTGGTCGTcggagaggcggagaaagagaaggt
ctcggaggaggagcaaaagcCTACTTTGCTTTCCGAGTCCGCGTATGCCT
CTGCGAATACAGGGGCTGGTTCCATCAGCATACAGGCGCCTCAGGACGAG
AGCGCCGCGACCTGGAACTTGAAGGGACAGCTTGTGAAGCTGGAGATCGG
GAGTGTGATGTCTACGGTCagggaagtgaaggagcagctctcgcccctcc
taGGAGGGATGCCGCCGAACAAAATGCAGTTGCGAAATGCGGAGCAGGGG
GTGTTTCTGAAGGATGCACAGACTCTTGCCTCCTACAATCTGGGCGCAGC
GGGCTCGTCTACCGTCTTGGAGCTCGTGACTCGCTCCAGGGGGGGCCGGA
AGTAAGCTGGGAAATGGTCAGGGTCTGCTTGAGGCAAACGCGAGCGCAAG
TGCCTGGCTTGACATTGCTTCTGTGGGCGGGTCATATTTGTACGAGTCCT
GGGATTCCTACGCGCGTCGCGTGCATCCGATAG back to top
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