EWM22494.1, cds8228 (CDS) Nannochloropsis gaditana

Overview
NameEWM22494.1
Unique Namecds8228
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:189194..191626 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22494.1
ProductSWAP/Surp
Orig transcript idgnl|cribi|Naga_100011g62.3494.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:189194..191626 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006396RNA processing
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR022030PRP21-like
IPR000061Surp
Homology
BLAST of EWM22494.1 vs. NCBI_GenBank
Match: gi|585103000|gb|EWM22494.1| (SWAP/Surp [Nannochloropsis gaditana])

HSP 1 Score: 1635.16 bits (4233), Expect = 0.000e+0
Identity = 810/810 (100.00%), Postives = 810/810 (100.00%), Query Frame = 0
Query:    1 MAEAPVKEEASTGVALDDADVENEIIQGRSGKVTGIIYPPPDIRAVVDKTAQWVARNGKSFEQRILSSEEGKSSKFNFMKPGDPYNAYYEHRIRQFEEGKGEGPAEKKAKIAEVSPPAAGETRDGKAVADTGETPTAVSAAPTTTVSKASVLGPIAKAALHKPEAPPPPQEFYISHPDGLNPLDVEIIKLTAQYTAASGRQFLAALAQREQRNPLFEFLKPSHILFSYFTTLVDAYIKVLQPTDSQRAMVRQGLETQKVLERAVHRWVHEKDEEQRKKQQQAEQEAERVAYQSVDWHDFVVVETITFAEDELLDVGMPEVGGGRANGEVSEDEGEDMELEEEEEALPLPPPPRPPVPPPRPAAGEERGPGQEGEEDMDLDEGEIKVVSSYKPRVAAGGGAARPEVMLDPVTGKEVPIADVGEHMRIQFLDPRWRDEQRRALEKRKESALAEGGDIAANVRSFAKKRTDIFGTSEEEERQILADQERFRARQEENQRMIWQGGTGGQGTLGPGRAPGPSPVASSEPRPGFPQQTNSFAQPPAPAPSQARGPVPPVSSSLLKNTLAGGAGASSFPAPPRGPPGGPPPGPPSWSASTATTTLGTGAATATATATATPSAAATAAAAAGKAACSHHTDPGRLEFGRRRGGEREGLGGGAKAYFAFRVRVCLCEYRGWFHQHTGASGRERRDLELEGTACEAGDRECDVYGQGSEGAALAPPRRDAAEQNAVAKCGAGGVSEGCTDSCLLQSGRSGLVYRLGARDSLQGGPEVSWEMVRVCLRQTRAQVPGLTLLLWAGHICTSPGIPTRVACIR 810
            MAEAPVKEEASTGVALDDADVENEIIQGRSGKVTGIIYPPPDIRAVVDKTAQWVARNGKSFEQRILSSEEGKSSKFNFMKPGDPYNAYYEHRIRQFEEGKGEGPAEKKAKIAEVSPPAAGETRDGKAVADTGETPTAVSAAPTTTVSKASVLGPIAKAALHKPEAPPPPQEFYISHPDGLNPLDVEIIKLTAQYTAASGRQFLAALAQREQRNPLFEFLKPSHILFSYFTTLVDAYIKVLQPTDSQRAMVRQGLETQKVLERAVHRWVHEKDEEQRKKQQQAEQEAERVAYQSVDWHDFVVVETITFAEDELLDVGMPEVGGGRANGEVSEDEGEDMELEEEEEALPLPPPPRPPVPPPRPAAGEERGPGQEGEEDMDLDEGEIKVVSSYKPRVAAGGGAARPEVMLDPVTGKEVPIADVGEHMRIQFLDPRWRDEQRRALEKRKESALAEGGDIAANVRSFAKKRTDIFGTSEEEERQILADQERFRARQEENQRMIWQGGTGGQGTLGPGRAPGPSPVASSEPRPGFPQQTNSFAQPPAPAPSQARGPVPPVSSSLLKNTLAGGAGASSFPAPPRGPPGGPPPGPPSWSASTATTTLGTGAATATATATATPSAAATAAAAAGKAACSHHTDPGRLEFGRRRGGEREGLGGGAKAYFAFRVRVCLCEYRGWFHQHTGASGRERRDLELEGTACEAGDRECDVYGQGSEGAALAPPRRDAAEQNAVAKCGAGGVSEGCTDSCLLQSGRSGLVYRLGARDSLQGGPEVSWEMVRVCLRQTRAQVPGLTLLLWAGHICTSPGIPTRVACIR
Sbjct:    1 MAEAPVKEEASTGVALDDADVENEIIQGRSGKVTGIIYPPPDIRAVVDKTAQWVARNGKSFEQRILSSEEGKSSKFNFMKPGDPYNAYYEHRIRQFEEGKGEGPAEKKAKIAEVSPPAAGETRDGKAVADTGETPTAVSAAPTTTVSKASVLGPIAKAALHKPEAPPPPQEFYISHPDGLNPLDVEIIKLTAQYTAASGRQFLAALAQREQRNPLFEFLKPSHILFSYFTTLVDAYIKVLQPTDSQRAMVRQGLETQKVLERAVHRWVHEKDEEQRKKQQQAEQEAERVAYQSVDWHDFVVVETITFAEDELLDVGMPEVGGGRANGEVSEDEGEDMELEEEEEALPLPPPPRPPVPPPRPAAGEERGPGQEGEEDMDLDEGEIKVVSSYKPRVAAGGGAARPEVMLDPVTGKEVPIADVGEHMRIQFLDPRWRDEQRRALEKRKESALAEGGDIAANVRSFAKKRTDIFGTSEEEERQILADQERFRARQEENQRMIWQGGTGGQGTLGPGRAPGPSPVASSEPRPGFPQQTNSFAQPPAPAPSQARGPVPPVSSSLLKNTLAGGAGASSFPAPPRGPPGGPPPGPPSWSASTATTTLGTGAATATATATATPSAAATAAAAAGKAACSHHTDPGRLEFGRRRGGEREGLGGGAKAYFAFRVRVCLCEYRGWFHQHTGASGRERRDLELEGTACEAGDRECDVYGQGSEGAALAPPRRDAAEQNAVAKCGAGGVSEGCTDSCLLQSGRSGLVYRLGARDSLQGGPEVSWEMVRVCLRQTRAQVPGLTLLLWAGHICTSPGIPTRVACIR 810          
BLAST of EWM22494.1 vs. NCBI_GenBank
Match: gi|553182850|ref|XP_005853795.1| (splicing factor 3A subunit 1 [Nannochloropsis gaditana CCMP526] >gi|422295269|gb|EKU22568.1| splicing factor 3A subunit 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 505.368 bits (1300), Expect = 1.750e-169
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0
Query:  337 MELEEEEEALPLPPPPRPPVPPPRPAAGEERGPGQEGEEDMDLDEGEIKVVSSYKPRVAAGGGAARPEVMLDPVTGKEVPIADVGEHMRIQFLDPRWRDEQRRALEKRKESALAEGGDIAANVRSFAKKRTDIFGTSEEEERQILADQERFRARQEENQRMIWQGGTGGQGTLGPGRAPGPSPVASSEPRPGFPQQTNSFAQPPAPAPSQARGPVPPVSSSLLKNTLAGGAGASSFPAPPRGPPGGPPPGPP 588
            MELEEEEEALPLPPPPRPPVPPPRPAAGEERGPGQEGEEDMDLDEGEIKVVSSYKPRVAAGGGAARPEVMLDPVTGKEVPIADVGEHMRIQFLDPRWRDEQRRALEKRKESALAEGGDIAANVRSFAKKRTDIFGTSEEEERQILADQERFRARQEENQRMIWQGGTGGQGTLGPGRAPGPSPVASSEPRPGFPQQTNSFAQPPAPAPSQARGPVPPVSSSLLKNTLAGGAGASSFPAPPRGPPGGPPPGPP
Sbjct:    1 MELEEEEEALPLPPPPRPPVPPPRPAAGEERGPGQEGEEDMDLDEGEIKVVSSYKPRVAAGGGAARPEVMLDPVTGKEVPIADVGEHMRIQFLDPRWRDEQRRALEKRKESALAEGGDIAANVRSFAKKRTDIFGTSEEEERQILADQERFRARQEENQRMIWQGGTGGQGTLGPGRAPGPSPVASSEPRPGFPQQTNSFAQPPAPAPSQARGPVPPVSSSLLKNTLAGGAGASSFPAPPRGPPGGPPPGPP 252          
BLAST of EWM22494.1 vs. NCBI_GenBank
Match: gi|325192378|emb|CCA26819.1| (splicing factor 3 subunit putative [Albugo laibachii Nc14])

HSP 1 Score: 327.405 bits (838), Expect = 1.173e-95
Identity = 185/468 (39.53%), Postives = 283/468 (60.47%), Query Frame = 0
Query:   31 GKVTGIIYPPPDIRAVVDKTAQWVARNGKSFEQRILSSEEGKSSKFNFMKPGDPYNAYYEHRIRQFEEGKGEGPAEKKAKIAEVSPPAAGETRDGKAVADTGETPTAVSAAPTTTVSKASVLGPIAKAALHKPEAPPPPQEFYISHPDGLNPLDVEIIKLTAQYTAASGRQFLAALAQREQRNPLFEFLKPSHILFSYFTTLVDAYIKVLQPTDSQRAMVRQGLETQKVLERAVHRWVHEKDEEQRKKQQQAEQEAERVAYQSVDWHDFVVVETITFAEDELLDVGMPEVGGGRANGEVSEDEGEDMELEEEEEALPLPPPPRPPVPPPRPAAGEERGPGQEGEEDMDLDEGEIKVVSSYKPRVAAGGGAARPEVMLDPVTGKEVPIADVGEHMRIQFLDPRWRDEQRRALEKRKESALAEGGDIAANVRSFAKKRTDIFGTSEEEERQILADQERFRARQEE-NQRM 497
            GKVTG+IYPPPDIRAVVDKTAQ+VARNG++FE+R+  + E  S+KF+F+KP DPY+AYYE ++ +F E +      KK++ ++ +  ++  + +   +A+        +       +  ++   +++    K   PPPP+ + I HP  L+ LD EI+ LTAQYTA SG+ FLA LA REQRNP F+FLKP+H LF+YFT LV++Y +VL  +  Q   + +G+   KVL+R VHR    + E +++ ++ AE +AER+A   +DWHDFVVVETI F ++E                +V +++ ED + E                   RPA+ ++     E +E+  +++ +IKVV  Y P V      + P+ M+  V GK +  AD  EHMRI  ++P+WR+E +R LEK+K+++ A G  IA ++R FA KR DIF +S EEE ++L ++++   R+E+ NQ M
Sbjct:  222 GKVTGLIYPPPDIRAVVDKTAQFVARNGRNFERRL--AGETSSTKFSFLKPSDPYHAYYEFKVNEFTEKEFVTEENKKSQESKPTEESSATSPEKSGIAENKLDAVNKNQVIFEKKAVETLTAKVSRKLNEKTIEPPPPELYKIQHP-TLSALDQEIMYLTAQYTAHSGKSFLAGLATREQRNPQFDFLKPTHALFAYFTALVESYAQVLSKSKDQMHRIEEGMSRMKVLDRCVHRMEWMRMEHEKQAKEVAESDAERLALAQIDWHDFVVVETIRFNDEE----------------DVQDEKTEDAKEE-------------------RPASDDDMDMEDESDEE--IEKPDIKVVDDYVPLVGKNASKSVPQSMMT-VDGKTISSADANEHMRILLMNPKWREESQRHLEKQKDTSFAAGSAIADSLRRFATKRADIFSSSAEEEARLLENEKK---REEKWNQSM 645          
BLAST of EWM22494.1 vs. NCBI_GenBank
Match: gi|635368968|emb|CCI42871.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 316.235 bits (809), Expect = 2.260e-93
Identity = 184/474 (38.82%), Postives = 275/474 (58.02%), Query Frame = 0
Query:   31 GKVTGIIYPPPDIRAVVDKTAQWVARNGKSFEQRILSSEEGKSSKFNFMKPGDPYNAYYEHRIRQFEEGKGEGPAEKKAKIAEVSP------PAAGETRDGKAVADTGETPTAVSAAPTTTVSKASVLGPIAKAALHKPEAPPPPQEFYISHPDGLNPLDVEIIKLTAQYTAASGRQFLAALAQREQRNPLFEFLKPSHILFSYFTTLVDAYIKVLQPTDSQRAMVRQGLETQKVLERAVHRWVHEKDEEQRKKQQQAEQEAERVAYQSVDWHDFVVVETITFAEDELLDVGMPEVGGGRANGEVSEDEGEDMELEEEEEALPLPPPPRPPVPPPRPAAGEERGPGQEGEEDMDLDEGEIKVVSSYKPRVAAGGGAARPEVMLDPVTGKEVPIADVGEHMRIQFLDPRWRDEQRRALEKRKESALAEGGDIAANVRSFAKKRTDIFGTSEEEERQILADQERFRARQEE-NQRM 497
            GKVTGIIYPPPDIRAVVDKTAQ+VARNG++FE+R+  + E  S+KF+F+KP DPY+ YYE ++ +F E        KK++  E +        A+ +  +    A++G    + +       +  ++   +++    K   PPPP+ + I HP  L+ LD EI+ LTAQYTA SG+ FLA LA REQRNP F+FLKP+H LF+YFT LV++Y +VL  +  Q   + +G+   KVL+R VHR    + E +++ ++ AE +AER+A   +DWHDFVVVETI F ++E                     + +D + ++ ++ LP                  +     E + D + ++  IKVV  Y P V      + P+ M+  V GK +  AD  EHMRI  ++P+WR+E +R LEK+K+++ A G  IA ++R FA KR DIF +S EEE ++L ++   R R+E+ NQ +
Sbjct:   22 GKVTGIIYPPPDIRAVVDKTAQFVARNGRNFERRL--AGETSSTKFSFLKPSDPYHTYYEFKVNEFTEKDFVIEENKKSQENETTDEHSTEHSASAKPLEKSTNAESGSNAGSKNEVIFEKKAVETLTAKVSRKLNEKTVEPPPPELYKIQHP-TLSALDQEIMYLTAQYTAHSGKSFLAGLATREQRNPQFDFLKPTHALFAYFTALVESYAQVLSKSKEQMHRIEEGMSRMKVLDRCVHRMEWMRMEHEKQAKEVAESDAERLALAQIDWHDFVVVETIRFNDEE---------------------DAQDEKADDAKDELP----------------ASDDDMDMEDDSDDEAEKPNIKVVDDYVPLVGKHAAKSVPQSMMT-VDGKTISSADANEHMRILLMNPKWREESQRHLEKQKDTSFAAGSAIADSLRRFATKRADIFSSSAEEEAKLLENE---RKREEKWNQSL 451          
BLAST of EWM22494.1 vs. NCBI_GenBank
Match: gi|953488426|emb|CEG47910.1| (probable splicing factor 3a subunit 1 [Plasmopara halstedii])

HSP 1 Score: 300.827 bits (769), Expect = 3.035e-87
Identity = 189/457 (41.36%), Postives = 269/457 (58.86%), Query Frame = 0
Query:   31 GKVTGIIYPPPDIRAVVDKTAQWVARNGKSFEQRILSSEEGKSSKFNFMKPGDPYNAYYEHRIRQFEEGKGEGPAEKKAKIAEVSPPAAGETRDGKAVADTGETPTAVSAAPT---TTVSKASVLGPIAKAALH---KPEAPPPPQEFYISHPDGLNPLDVEIIKLTAQYTAASGRQFLAALAQREQRNPLFEFLKPSHILFSYFTTLVDAYIKVLQPTDSQRAMVRQGLETQKVLERAVHRWVHEKDEEQRKKQQQAEQEAERVAYQSVDWHDFVVVETITFAEDELLDVGMPEVGGGRANGEVSEDEGEDMELEEEEEALPLPPPPRPPVPPPRPAAGEERGPGQEGEEDMDLDEGEIKVVSSYKPRVAAGGGAARPEVMLDPVTGKEVPIADVGEHMRIQFLDPRWRDEQRRALEKRKESALAEGGDIAANVRSFAKKRTDIFGTSEEEERQIL 481
            G+VTGIIYPPPDIRAVVDKTAQ+VA NG++FE RI+   E  S+KF+F++  DPY+AYYEH++ +    K EG          VS  +  +  +G    +  +T   V AA T     V K +V    A+AA+    K   PPP ++F I HP  L+ LD EI+ LTAQYTA SG  FL+ LA REQRNP F+FLKP+H LF+YFT LV++Y  V+   + Q   + +G++  KVL+R V+R   ++ E++RK ++ AE +AER A   +DWHDFVVVETI F +D+       ++G     GE  E +G D +++ +E+       P+P                            +IK+V  + P+V  G    +P + +D   GK +  A+  EHMRI  ++P+WR+E +R LEK+KES+ A G  IA ++R FA KR+DIF +S EEE ++L
Sbjct:   14 GRVTGIIYPPPDIRAVVDKTAQFVASNGRAFESRIVG--ERMSAKFSFLRESDPYHAYYEHKVSELIAKKEEG----------VSVESEQQQVNGSE--EQVKTQMIVKAAETAGDVVVEKKAVQDVAAQAAIKLKDKELEPPPDEKFIIKHP-TLSALDQEIMYLTAQYTALSGSSFLSGLATREQRNPQFDFLKPTHPLFAYFTALVESYTLVMAKQEMQMKRIEEGMDRMKVLDRCVYRMEWQRTEQERKDREVAESDAERRALAQIDWHDFVVVETINFDDDD-------DLGASATVGE-EETKGSDDDMDMDEDEDDDDDGPQP----------------------------DIKIVEDHVPQV-TGATTQQPLLSVD---GKTISSAEANEHMRILLMNPKWREETQRHLEKQKESSYAPGSAIADSLRRFATKRSDIFASSAEEEARLL 415          
BLAST of EWM22494.1 vs. NCBI_GenBank
Match: gi|669161232|ref|XP_008616178.1| (hypothetical protein SDRG_11902 [Saprolegnia diclina VS20] >gi|530732083|gb|EQC30325.1| hypothetical protein SDRG_11902 [Saprolegnia diclina VS20])

HSP 1 Score: 288.5 bits (737), Expect = 3.687e-83
Identity = 189/481 (39.29%), Postives = 265/481 (55.09%), Query Frame = 0
Query:   18 DADVENEIIQGRSGKVTGIIYPPPDIRAVVDKTAQWVARNGKSFEQRILSSEEGKSSKFNFMKPGDPYNAYYEHRIRQFEE--GKGEGPAEKKAKIAEVSPPAAGETRDGKAVADTGETPTAVSAAPTTTVSKASVLGPIAKAALHKPEA----PPPPQEFYISHPDGLNPLDVEIIKLTAQYTAASGRQFLAALAQREQRNPLFEFLKPSHILFSYFTTLVDAYIKVLQPTDSQRAM--------VRQGLETQKVLERAVHRWVHEKDEEQRKKQQQAEQEAERVAYQSVDWHDFVVVETITFAEDELLDVGMPEVGGGRANGEVSEDEGEDMELEEEEEALPLPPPPRPPVPPPRPAAGEERGPGQEGEEDMDLDE--GEIKVVSSYKPRVAAGGGAARPEVMLDPVTGKEVPIADVGEHMRIQFLDPRWRDEQRRALEKRKESALAEGGDIAANVRSFAKKRTDIFGTSEEEERQILA 482
            + DV+  ++ GR   VTGIIYPPPDIRAVVDKTAQ+VA+NG++FE++I  + E  S+KF+F+K GDPY+AYYEH++  FE    + E PAE + K  EV+ PA     +G AV                 V +  V   + KA  +  E+    PP  ++F   HP  L   D EI+ LTAQ+TA  G+ FL+ LA REQRNP F+F+ P H LF+YFT LV++Y K+L    +QR          + +G++   VL+R VH+    + E + K++++AE +AER+AY  +DWHDFV+VETI F + +L+  G         N    ED+                    P        +     P     +    DE   E+KVV +Y P+ AA  GA+   V +  V G  V  AD  EHMRI  + P++R+E +R L K+KES  A G  IA N + FA KR+DIF +S EEE ++ A
Sbjct:    5 EVDVDTGVVHGR---VTGIIYPPPDIRAVVDKTAQFVAKNGRAFERKI--AGEVISAKFSFLKTGDPYHAYYEHKVEDFERQLNEPEKPAEPE-KPVEVAAPAPVPEPEGVAV---------------EVVERKPVEAVVGKALRNLSESDKKRPPAEEQFKQKHP-TLTAQDQEIMYLTAQFTAVGGKAFLSGLATREQRNPQFDFINPVHPLFAYFTFLVESYAKILT-AKAQRGKKANPLLERLDEGVDRMSVLDRCVHKLEFMRIENEAKQKEEAESDAERLAYMQIDWHDFVIVETIVFDDSDLVTDG--------TNPYYLEDD--------------------PTTQATSAPSAAAAEPDDMDMDMDMDDEQPSELKVVENYVPKAAASSGAS---VNMMSVDGHAVSTADANEHMRILLMAPKYREETQRHLNKQKESPFAPGAAIADNFKRFASKRSDIFSSSAEEEAKLTA 431          
BLAST of EWM22494.1 vs. NCBI_GenBank
Match: gi|769807452|ref|XP_011624654.1| (probable splicing factor 3A subunit 1 [Amborella trichopoda] >gi|548851182|gb|ERN09458.1| hypothetical protein AMTR_s00029p00096200 [Amborella trichopoda])

HSP 1 Score: 282.722 bits (722), Expect = 1.564e-79
Identity = 177/490 (36.12%), Postives = 278/490 (56.73%), Query Frame = 0
Query:   32 KVTGIIYPPPDIRAVVDKTAQWVARNGKSFEQRILSSEEGKSSKFNFMKPGDPYNAYYEHRIRQFEEGKGEGPAEKKAKIAEVSPPAAGETRDGKAVADTGETPTAVSAAPTTTVSK-ASVLGPIAKAALHKPEAPPPPQEFYISHPDGLNPLDVEIIKLTAQYTAASGRQFLAALAQREQRNPLFEFLKPSHILFSYFTTLVDAYIKVLQPTDSQRAMVRQG-LETQKVLERAVHRWVHEKDEEQRKKQQQAEQEAERVAYQSVDWHDFVVVETITFAEDELLDVGMP---EVGGGRANGEVSEDEGEDMELEEEEEALPLPPPPRPPVPPPRPAAGEERGPGQEGEEDMDLDEGE-----IKVVSSYK---PRVAAGGGAARPEVMLDPVTGKEVPIADVGEHMRIQFLDPRWRDEQRRALEKRKESALAEGGDIAANVRSFAKKRTDIFGTSEEE-ERQILADQERFRARQEENQRMIWQGGTGGQG 507
            K  GII+PPPDIR +VDKTAQ+VARNG  FE+RIL++E+  ++KFNF+ P DPY+AYY+HR+ +F          +     + +P  AG   D +   +    P +V A  T   +K  S   PI K  L  PEA    +++ +  P+G+   +++IIKLTAQY A +G+ FL  L  RE  NP F F+KP+H +F++FTTL DAY KVL P       +R+   +   VLER +HR   EK +EQ +++ + E E ER+    +DWHDFVVVETI FA+DE  ++  P   E    R+     E+  E +E  +E E               R A+ E+     + +E+      E     +++V ++K    R+ A     +   ++ P+TG+ +PI ++ EH+RI  +DP++++++ R + K +E+ LA+  +I+ N+   A+ R DIFGT+EEE    + A+ E  + ++++ +++IW G TG  G
Sbjct:   59 KTIGIIHPPPDIRNIVDKTAQFVARNGPEFEKRILANEKN-NAKFNFLNPSDPYHAYYQHRVSEFRT--------QLQSSTQAAPIQAGPIPDAQ---NDASAPASVPALETNEAAKPESQFKPIRKV-LEPPEA----EQYTVRLPEGITGEELDIIKLTAQYVARNGKSFLQGLTSREINNPQFHFIKPTHSMFTFFTTLADAYSKVLMPPKGLTEKLRKNAADMTTVLERCLHRLEWEKSQEQARQKAEDEIEQERLQMAMIDWHDFVVVETIEFADDEDEELPQPMTLEEVIRRSKASALEEMEEVVEPGKEVEMEMDEEEVELVEESMRTASLEDNADDGKKDENTHAKPAEESEPPMRIVKNWKRPEERLPAERDPTK--FVVSPITGELIPINEMAEHIRISLIDPKYKEQKERMMAKIRETTLAQDDEISRNIVGLARTRPDIFGTTEEEVSNAVKAEIE--KKKEDQPKQVIWDGHTGSIG 527          
BLAST of EWM22494.1 vs. NCBI_GenBank
Match: gi|1150689152|ref|XP_020255669.1| (LOW QUALITY PROTEIN: probable splicing factor 3A subunit 1 [Asparagus officinalis])

HSP 1 Score: 281.567 bits (719), Expect = 2.371e-79
Identity = 183/505 (36.24%), Postives = 284/505 (56.24%), Query Frame = 0
Query:   32 KVTGIIYPPPDIRAVVDKTAQWVARNGKSFEQRILSSEEGKSSKFNFMKPGDPYNAYYEHRIRQFEEGKGEGPAEKKAKIAEVSPPAAGETRDGKAV-ADTGETPTAVSAAPTTTVSKASVLGPIAKAALHKPEAPPPPQEFYISHPDGLNPLDVEIIKLTAQYTAASGRQFLAALAQREQRNPLFEFLKPSHILFSYFTTLVDAYIKVLQPTDSQRAMVRQGLETQK-VLERAVHRWVHEKDEEQRKKQQQAEQEAERVAYQSVDWHDFVVVETITFA--EDELLDVGMP--EV--------------GGGRANGEVSEDEGEDMELEEEEEALPLPPPPRPPVPPPRPAAGEERGPGQEGEEDMDL---DEGE--IKVVSSYK---PRVAAGGGAARPEVMLDPVTGKEVPIADVGEHMRIQFLDPRWRDEQRRALEKRKESALAEGGDIAANVRSFAKKRTDIFGTSEEE-ERQILADQERFRARQEENQRMIWQGGTGGQG 507
            +  GII+PPPDIR +++KTA +VA+NG  FE+RI++   G ++KFNF+ P DPY+AYY+HR+ +F+  + +  A+    + E  PP+      G A+  D+ E P        T  +   ++ P  K  L  PEA    +++ +  P+G+   +V+IIKLTAQ+ A +G+ FL AL  RE  NP F FLKP+H +F++FTTL DAY KVL P       +R G++    VLER +HR   E+ +EQ + + + E E ER+    +DWHDFVVVETI FA  EDE L V M   EV                     +  E E ++ E++  EE +             R A  EE G G E + D+ +   DE E  +++V ++K    R+ A     +   ++ P+TG+ +PI+++ EHMRI  +DP++++++ R + K +E+ LA   +I+ N+   A+ R DIFGT+EEE    + A+ E  + + E+ +++IW G TG  G
Sbjct:   49 RTIGIIHPPPDIRVIIEKTATFVAKNGPEFERRIMAHNAG-NAKFNFLNPSDPYHAYYQHRVSEFK-TQLQSSAQLPDSLQEQQPPSDP----GDAMRVDSSEAPAVTDEKSKTDPASQFLVQP--KKVLEPPEA----EQYTVRLPEGITGEEVDIIKLTAQFVARNGKNFLQALTAREGNNPQFYFLKPTHSMFTFFTTLADAYSKVLMPPQGLTDKLRNGVQDMTVVLERCLHRLEWERSQEQARLKAEDEIEQERMQMAMIDWHDFVVVETIEFADEEDEELPVPMSLEEVIRRSKVSALEEEEGMEVVGTAKEVEMEMDEEEIQMVEEGM-------------RAARIEENGGGDEKKGDVKMTLNDEPEPPMRIVKNWKRPEERILAERDPTK--FVISPITGELIPISEMAEHMRISLIDPKYKEQKERMMAKIRETTLAADDEISRNIVGLARTRPDIFGTTEEEVSNAVKAEIE--KKKDEQPKQVIWDGHTGSIG 524          
BLAST of EWM22494.1 vs. NCBI_GenBank
Match: gi|326511295|dbj|BAJ87661.1| (predicted protein [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 281.567 bits (719), Expect = 2.448e-79
Identity = 187/547 (34.19%), Postives = 291/547 (53.20%), Query Frame = 0
Query:   32 KVTGIIYPPPDIRAVVDKTAQWVARNGKSFEQRILSSEEGKSSKFNFMKPGDPYNAYYEHRIRQFEEGKGEGPAEKKAKIAEVSPPAAGETRDGKAVADTGETPTAVSAAPTTTVSKASVLGPIAKAALHKPEAPPPPQEFYISH-PDGLNPLDVEIIKLTAQYTAASGRQFLAALAQREQRNPLFEFLKPSHILFSYFTTLVDAYIKVLQPTDSQRAMVRQGLETQK----VLERAVHRWVHEKDEEQRKKQQQAEQEAERVAYQSVDWHDFVVVETITFAEDELLDVGMPEVGGGRANGEVSEDEGEDMELEEEEEALPLPPPPRPPVPPPRPAAGEERGPGQEGEEDMD---LDEGE---------------IKVVSSYK---PRVAAGGGAARPEVMLDPVTGKEVPIADVGEHMRIQFLDPRWRDEQRRALEKRKESALAEGGDIAANVRSFAKKRTDIFGTSEEEERQILADQERFRARQEENQRMIWQGGTGGQG-------TLG---PGRAPGPSPVASSEPRPGFPQQTNSFAQPPAP 542
            +  GII+PPPDIR +++KTA +VA+NG  FE+RI++  +G ++KFNF++P DPY+AYY+HR+ +  +                +PPA+ +  D  A+        A  A      +   V  P AK  +      PP  E Y  H P+G+   +V+I+KLTAQ+ A +G+ FL++LA RE  NP F FL+P+H +F  FT L D Y +V++P +   A++R+  E  K    VLER ++R   ++ +EQ K+Q + E E ER+    +DWHDFVVVETI FA+DE   + +P         +  E  GE+  +E  E A  +                 +    Q  EE M    LDE +               +++V +YK    R+ A     +  V++ P+TG+ +PI+++ EHMRI  +DP++++++ R L K KE+ LA   +I+ N+   A+ R DIFGT+EEE    +   E  + + E+ +++IW G +G  G       ++G    G APGP+P+    PRPG P       +PP P
Sbjct:   61 RTIGIIHPPPDIRVIIEKTASFVAKNGPEFERRIVALNQG-NAKFNFLQPSDPYHAYYQHRVSEIAD----------------APPASSDAADPDALPSDDSAAAADGAPAADHSAPFRV-APPAKVLV------PPKAELYTVHLPEGITTEEVDIVKLTAQFVARNGKAFLSSLAARESTNPQFNFLRPTHSMFPLFTALADIYSRVMRPDEGVSALMRELKEGSKDLTTVLERCLNRLEWDRTQEQAKQQAEDEVEMERMQMSMIDWHDFVVVETIEFADDEFEGLPVPPTLEELKRRKRMETLGEEEPMELAEPAKDV-------------EMEMDEEEMQLVEEGMKAARLDENDGGAQVKVAGNDEEPPMRIVKNYKRPEERIPAERDPTK--VVVSPITGELIPISEMEEHMRISLIDPKYKEQKERMLAKIKETTLAPDDEISRNIIGLARTRPDIFGTTEEEVSNAVK-AEIEKKKDEQPKQVIWDGHSGSIGWTATQAMSIGGEEQGDAPGPAPL----PRPGMP-----LPRPPQP 558          
BLAST of EWM22494.1 vs. NCBI_GenBank
Match: gi|1141992786|gb|ONK74005.1| (uncharacterized protein A4U43_C03F1810 [Asparagus officinalis])

HSP 1 Score: 281.567 bits (719), Expect = 2.847e-79
Identity = 183/505 (36.24%), Postives = 284/505 (56.24%), Query Frame = 0
Query:   32 KVTGIIYPPPDIRAVVDKTAQWVARNGKSFEQRILSSEEGKSSKFNFMKPGDPYNAYYEHRIRQFEEGKGEGPAEKKAKIAEVSPPAAGETRDGKAV-ADTGETPTAVSAAPTTTVSKASVLGPIAKAALHKPEAPPPPQEFYISHPDGLNPLDVEIIKLTAQYTAASGRQFLAALAQREQRNPLFEFLKPSHILFSYFTTLVDAYIKVLQPTDSQRAMVRQGLETQK-VLERAVHRWVHEKDEEQRKKQQQAEQEAERVAYQSVDWHDFVVVETITFA--EDELLDVGMP--EV--------------GGGRANGEVSEDEGEDMELEEEEEALPLPPPPRPPVPPPRPAAGEERGPGQEGEEDMDL---DEGE--IKVVSSYK---PRVAAGGGAARPEVMLDPVTGKEVPIADVGEHMRIQFLDPRWRDEQRRALEKRKESALAEGGDIAANVRSFAKKRTDIFGTSEEE-ERQILADQERFRARQEENQRMIWQGGTGGQG 507
            +  GII+PPPDIR +++KTA +VA+NG  FE+RI++   G ++KFNF+ P DPY+AYY+HR+ +F+  + +  A+    + E  PP+      G A+  D+ E P        T  +   ++ P  K  L  PEA    +++ +  P+G+   +V+IIKLTAQ+ A +G+ FL AL  RE  NP F FLKP+H +F++FTTL DAY KVL P       +R G++    VLER +HR   E+ +EQ + + + E E ER+    +DWHDFVVVETI FA  EDE L V M   EV                     +  E E ++ E++  EE +             R A  EE G G E + D+ +   DE E  +++V ++K    R+ A     +   ++ P+TG+ +PI+++ EHMRI  +DP++++++ R + K +E+ LA   +I+ N+   A+ R DIFGT+EEE    + A+ E  + + E+ +++IW G TG  G
Sbjct:   49 RTIGIIHPPPDIRVIIEKTATFVAKNGPEFERRIMAHNAG-NAKFNFLNPSDPYHAYYQHRVSEFK-TQLQSSAQLPDSLQEQQPPSDP----GDAMRVDSSEAPAVTDEKSKTDPASQFLVQP--KKVLEPPEA----EQYTVRLPEGITGEEVDIIKLTAQFVARNGKNFLQALTAREGNNPQFYFLKPTHSMFTFFTTLADAYSKVLMPPQGLTDKLRNGVQDMTVVLERCLHRLEWERSQEQARLKAEDEIEQERMQMAMIDWHDFVVVETIEFADEEDEELPVPMSLEEVIRRSKVSALEEEEGMEVVGTAKEVEMEMDEEEIQMVEEGM-------------RAARIEENGGGDEKKGDVKMTLNDEPEPPMRIVKNWKRPEERILAERDPTK--FVISPITGELIPISEMAEHMRISLIDPKYKEQKERMMAKIRETTLAADDEISRNIVGLARTRPDIFGTTEEEVSNAVKAEIE--KKKDEQPKQVIWDGHTGSIG 524          
The following BLAST results are available for this feature:
BLAST of EWM22494.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103000|gb|EWM22494.1|0.000e+0100.00SWAP/Surp [Nannochloropsis gaditana][more]
gi|553182850|ref|XP_005853795.1|1.750e-169100.00splicing factor 3A subunit 1 [Nannochloropsis gadi... [more]
gi|325192378|emb|CCA26819.1|1.173e-9539.53splicing factor 3 subunit putative [Albugo laibach... [more]
gi|635368968|emb|CCI42871.1|2.260e-9338.82unnamed protein product [Albugo candida][more]
gi|953488426|emb|CEG47910.1|3.035e-8741.36probable splicing factor 3a subunit 1 [Plasmopara ... [more]
gi|669161232|ref|XP_008616178.1|3.687e-8339.29hypothetical protein SDRG_11902 [Saprolegnia dicli... [more]
gi|769807452|ref|XP_011624654.1|1.564e-7936.12probable splicing factor 3A subunit 1 [Amborella t... [more]
gi|1150689152|ref|XP_020255669.1|2.371e-7936.24LOW QUALITY PROTEIN: probable splicing factor 3A s... [more]
gi|326511295|dbj|BAJ87661.1|2.448e-7934.19predicted protein [Hordeum vulgare subsp. vulgare][more]
gi|1141992786|gb|ONK74005.1|2.847e-7936.24uncharacterized protein A4U43_C03F1810 [Asparagus ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8252rna8252Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications