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Properties
| Property Name | Value |
|---|
| Product | tata element modulatory factor 1 |
| Orig transcript id | gnl|cribi|Naga_100011g61.3503.mrna |
| Orig protein id | gnl|cribi|Naga_100011g61.3503 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037248.1 | supercontig | KK037248.1:185534..188642 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8251 ID=rna8251|Name=rna8251|organism=Nannochloropsis gaditana|type=mRNA|length=1546bp
ATCCACAGGTTTAACTCTATGTACACAGGGGTGAGAAGGAGAGAGAGCCC
CGTCAGTGGTGTGTCCGCTTCGCGACTCGCGTCTAATTGATTCGATGGAG
GTGGAAGCAAGGCCTCGGCATGCCGTATGCATGGTCTGCGACTTCTTTTA
CCCAAGCATGGGGGGCGTGGAGATGCATATCTGGTCTCTCGCGCAGTGCT
TGCTTAAGCTGGGCCACAAGGTCGTAGTTGTCACCCACTCGTACGACAAT
CGCAAAGGGGTGCGGTACATGCAAAACGGTCTCAAAGTATATTACTGCCC
GCTGCTGACGTTTTACGACCAAGACGTCTGGCCTACATTGTTTGCTTTCT
TTCCCTTATTCCGTCACATCTTGATACGGGAGAGGATAAGTATAGTTCAC
ACACACCAGGCTACATCGGTGATGAGCATTGAATGCACCTTGTACGCTAG
GACGATGGGCTATAAGGTTGTTTACACGGACCACTCATTGTTTGGTTTTG
CTGATGCGGGAAGTATCCATATTAATCAAGTGATGCGGTTCATCCTGTCC
GATGTCGATCACTGCATATGCGTCTCGAACACCTGCCGGGAGAACCTGGC
CCTTAGGGCCCGCCTCCACCCCATCTTGCTCTCCACGATCCCCAACGCCG
TAGATCCAGACAAATTTACGCCGGATTTGGGTCAGCACCGTCGCCTGAGC
ACTGGCGGCGATCGCATCAACGTTGTCATGATCAGTCGGCTGGTCTATCG
CAAGGGGATTGACCTGGTTGCCAGAGTCATTCCTATGGTTTGTGCTCGCT
TCCCACACGTGCATTTCATCGTGGGAGGGGATGGCAACAAGAAATTGCTC
ATCGAGGAGATGCGGGAACGACATCAGCTGCAGGACCGGGTCGAGATGCT
GGGTCGTGTGCCACACTCGGACGTGCGGGATGTCCTGGTGCGAGGCCACA
TTTTCCTGAACTGCTCCTTGACTGAATCCTTCTGTATCGCTATTTTGGAA
GCAGCAAGCTGTGGACTGTTTGTCGTCAGTACGTGTGTTGGCGGGGTCCC
AGAGGTGCTGCCACCTTCGATGATCAAATTCGCGGATCCCACCGTCGAGT
CACTTGCAGCGGCGATCGAGGCAGCATTGCCTCTGGCCAAAGAGGTGGCG
CCTGCTGAGTTTCATCGACGGGTACGGCACATGTACAATTGGATGGAGGT
CGCGCGTCGCACTGAGACTGTTTACCATCATGTCCGGGAAGCTTCCACAC
CCACTCTCATGGAACGCTTGCGCCGCTACAATACCGTGGGAGGGGCAGTC
GCTGGATGGCTGTGCTGCTTCGCTGTGTCGGTCATGTACTTGGCCTGGCG
GGTCATCGAATGGATCTGGCCTCGGGAGGATATCGAACTGGCACACGAGT
TTCCGTCGACCCGGTACATACATGACAACGGGAAAAGGAAAAAATGAGAA
AAACTTGATTTGCAGAAAGACATTATTTGTACATCCCATCTTACCCTAAG
ATTGTAAGCTTGAGAATAACAAAGAACATAATTTCCCTGATCAAGA back to topprotein sequence of rna8251 >rna8251-protein ID=rna8251-protein|Name=rna8251|organism=Nannochloropsis gaditana|type=polypeptide|length=589bp
MWSKLSSELLGKETQDALTDALQKGKQAWQSIEQSLDQAVDADTVVSKES
TLPISIPYISTPEALDSPCADAVAKADPCLEEQIEYEGTTQNLSPQSCVT
TCNLALAADNATEIGHVGIGNTLTAYDSPKSIDLALKSSRALANSMELKV
KGERDDRGKDNISPAPIVATPTGDCDAEGDLEGSTHSGSCQAEKEARGLR
LDTSTESNGAVESSCPEPNRSQSTTAPAGNGDRDIQSTASSPLELTLTPA
ISNFTSIATAVPADGFQREREHLQRELRESQGRVQALENEIRKAQAIYMS
EEAKQRQIHALQEEGKALAFKQSEMEQLVRKSRAELKKVESERSQLQESN
EAHKREMVTLREQLRASETEKNLLAQSLSAVQAVNKSAAEKTSKLEQELS
HAQVEISSQHESLQKAWEEEKEMKRMISEMTASESGVKDLQDPGKALSRG
LAGIKDDFERREAVLQATNKQLQEALTRASLEAGLREDSLRQELAEMRRR
WQDAVSRTEGMASDVHEATVPLLRQIKALQEEARGRAAAWASAEEALTDR
ARGAEGLARTAEAERLELGGRVEGLRTRIEDLDVQLRYA back to topmRNA from alignment at KK037248.1:185534..188642- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8251 ID=rna8251|Name=rna8251|organism=Nannochloropsis gaditana|type=mRNA|length=3109bp|location=Sequence derived from alignment at KK037248.1:185534..188642- (Nannochloropsis gaditana)
GGGCCGCTCTCTCGGATCACCCCATCCTGTCATCTAACTGAACCTCAACG
ATCGCTTTTAGGCTCCTTTTTTGAGTGCCATACTTCGCGTATGTGGTCCA
AGCTTAGCTCCGAATTGCTTGGAAAGGAAACTCAAGATGCTTTGACGGAT
GCCTTACAAAAAGGCAAGCAGGCTTGGCAGTCAATTGAGCAGTCGCTGGA
TCAAGCCGTAGATGCGGACACGGTAGTTTCCAAGGAAAGCACACTGCCAA
TCTCTATCCCCTACATTTCTACACCCGAGGCTCTTGATTCGCCTTGTGCC
GATGCTGTGGCAAAGGCCGATCCGTGTTTGGAGGAGCAAATCGAGTATGA
AGGAACCACGCAAAACTTGTCCCCTCAGTCATGCGTAACGACATGTAATT
TAGCTTTGGCCGCCGACAATGCTACAGAAATAGGACACGTGGGCATAGGA
AATACCTTAACAGCTTACGATAGTCCAAAATCTATTGATCTAGCTCTTAA
ATCTAGTCGTGCGCTCGCTAATTCGATGGAACTTAAAGTCAAAGGCGAAC
GAGACGATCGGGGGAAAGACAACATAAGTCCAGCTCCAATTGTTGCCACG
CCTACTGGTGATTGCGACGCTGAAGGAGATCTCGAGGGCTCGACACATTC
AGGTTCATGTCAAGCTGAGAAGGAGGCACGGGGGTTGAGACTGGACACGA
GCACCGAGAGCAATGGAGCTGTTGAAAGTAGTTGCCCAGAACCGAATCGA
TCTCAGTCGACCACTGCCCCCGCCGGGAATGGAGATCGTGACATCCAGTC
GACAGCATCCAGCCCCCTCGAGCTGACACTTACCCCTGCCATAAGTAATT
TTACATCCATTGCTACAGCTGTGCCCGCAGATGGCTTTCAAAGGGAGCGA
GAGCACTTGCAGAGGGAATTAAGGGAGTCTCAGGGTCGGGTGCAAGCCTT
GGAGAATGAGATCAGAAAAGCCCAGGCGATTTACATGAGCGAGGAGGCCA
AACAACGGCAAATTCATGCATTGCAAGAGGAGGGCAAGGCGTTGGCATTC
AAGCAGTCTGAAATGGAGCAACTGGTACGCAAAAGCCGTGCAGAATTGAA
AAAGGTAGAATCGGAAAGGTCGCAGCTGCAAGAGTCGAATGAGGCTCACA
AAAGAGAAATGGTAACACTGAGGGAGCAGCTTCGCGCCTCAGAGACGGAG
AAGAACCTGCTGGCACAGAGCCTGTCGGCGGTCCAGGCCGTCAACAAGTC
AGCGGCTGAGAAGACGTCGAAGGTAGGGGAGTCAAGCGCCTCCGTCGACA
GAGGGTCGATTTTTCAATTGTGACGCAATAGTCGGGTGCGTGTAAAAGAT
CAGTCTTCGCATCATGTCCTCATATCTTCGTCTTCCGTTCCTCTCTACAG
TTGGAGCAAGAGCTCAGCCACGCACAGGTAGAGATCAGCAGCCAGCATGA
ATCTTTACAGAAGGCATGGGAGGAGGAGAAGGAAATGAAGCGAATGATTT
CGGAAATGACTGCGTCGGAGAGCGGGGTCAAGGACTTGCAAGACCCGGGG
AAGGCTCTCTCGCGCGGTCTGGCCGGGATCAAGGACGACTTCGAGCGGCG
CGAGGCGGTCCTACAAGCCACGAATAAGCAGCTACAAGAGGCATTGACTC
GCGCAAGCCTGGAGGCAGGCCTGCGTGAAGACAGTCTGCGACAAGAACTT
GCAGAGATGCGAAGGCGGTGGCAGGACGCTGTCTCTCGCACGGAGGGCAT
GGCATCCGACGTGCACGAGGCGACCGTGCCGCTGCTCCGACAGATCAAGG
CCCTGCAGGAAGAGGCTCGAGGACGGGCAGCTGCCTGGGCCAGCGCGGAG
GAGGCCTTGACGGATAGAGCGCGGGGGGCTGAGGGCTTGGCACGCACAGC
GGAGGCGGAGCGGCTGGAGCTGGGCGGGAGGGTGGAGGGTCTCAGGACGA
GAATAGAGGACCTCGACGTCCAACTTCGGTACGCATAGAAGCGTGAGGGC
ATGGCCAGTCATGCAACTTAGGAGCTGGCGATTGACGATCTTACCCTTTA
GACGAGTTCACGCGCTTCACCTCTGTCCGCCCTTACACAGCGCCACTACC
CTCAAGCTGCATGAGACAGCGGCCCATCTCAAGACAGTCGAGGTAGGTCT
GCAGAGGAAAACTGCCACTCTTACATTTCACTGCTTCGCCTGGATCTGTG
CCATTACTCCACCCAATTGCCTCACCTGCTTGCCCCCACCCGTAGGCCAG
AGAGGCCGAGAGCCGAAACAGGACTTTGGAGGTCGAGCAAGAGCTGAAGG
CCGCTGAGGACAGGCTGTCTCACGCAAGCAAAGAGAAAAAAAGTCAGGAG
ACCATGTTGAAGAGGAAGTTGCAAGAGGGCAAGGACGCCTTGCTGGTGAT
GAAGAGTGAATTCGAGCACGAGGAGGCCAGGCTTAAGCTCGAGGTGGAAA
CTTTGGAGAAGAAGTTGGCCGCACAAATGGCGGCACAAGAGCGGACTCAA
GCGTTACACCAAAGCGCACTTGAAAAGGGTTCTTTGTCAAATAGCAGGCC
CCACGCTTCCTCCCACGCGAGGCTATCGCAGAATTCCATATTAGAACTTA
CCCTTTCAGGTTATATGAGCAGTGATGAGAGCACCAATAGTGTTGCTGAC
CGATTAAAAGGAAGTGTGGGATCGCAATACATCCTTGCCTCCGAGAAAAT
GCATCAAGCTTTACGGCAGAAGGAGACCGAGATACAGCATTTGCAGTCGC
GCTTGCACGATCTGGAACGTACAAGGGATGCTTTGACAGAAGAAGTAACA
GTACTCGGTCGACAAAATTCTTTACAGGCTGCCAAAGCGATGCGCTCAGC
CGCAGAGGTAGCCAAATTAAGAGGCTTGTCGAAGGAGAAGGAAGTGTTAT
TGGAGCTTCTCGGTGAGAAAACCGAGGAAGTCGAGGCGCTGGAGGCAGAG
ACGGAGAGCCTCAAAGCCCGCTTCCGCTGCCAGCTCGACCAGCCGCCGCA
CAGCTCTCAAGGACAAAAAGAAAAGGACAAGCAGCCATCAGACGCTTTTT
CGACTTAAAAGAGGAACGTCTTTGTAGCATCAAAGTAATCACACGTGTAA
TTGAATTCC back to topCoding sequence (CDS) from alignment at KK037248.1:185534..188642- >rna8251 ID=rna8251|Name=rna8251|organism=Nannochloropsis gaditana|type=CDS|length=3540bp|location=Sequence derived from alignment at KK037248.1:185534..188642- (Nannochloropsis gaditana)
TTGGAGCAAGAGCTCAGCCACGCACAGGTAGAGATCAGCAGCCAGCATGA
ATCTTTACAGAAGGCATGGGAGGAGGAGAAGGAAATGAAGCGAATGATTT
CGGAAATGACTGCGTCGGAGAGCGGGGTCAAGGACTTGCAAGACCCGGGG
AAGGCTCTCTCGCGCGGTCTGGCCGGGATCAAGGACGACTTCGAGCGGCG
CGAGGCGGTCCTACAAGCCACGAATAAGCAGCTACAAGAGGCATTGACTC
GCGCAAGCCTGGAGGCAGGCCTGCGTGAAGACAGTCTGCGACAAGAACTT
GCAGAGATGCGAAGGCGGTGGCAGGACGCTGTCTCTCGCACGGAGGGCAT
GGCATCCGACGTGCACGAGGCGACCGTGCCGCTGCTCCGACAGATCAAGG
CCCTGCAGGAAGAGGCTCGAGGACGGGCAGCTGCCTGGGCCAGCGCGGAG
GAGGCCTTGACGGATAGAGCGCGGGGGGCTGAGGGCTTGGCACGCACAGC
GGAGGCGGAGCGGCTGGAGCTGGGCGGGAGGGTGGAGGGTCTCAGGACGA
GAATAGAGGACCTCGACGTCCAACTTCGGTACGCATAGATGTGGTCCAAG
CTTAGCTCCGAATTGCTTGGAAAGGAAACTCAAGATGCTTTGACGGATGC
CTTACAAAAAGGCAAGCAGGCTTGGCAGTCAATTGAGCAGTCGCTGGATC
AAGCCGTAGATGCGGACACGGTAGTTTCCAAGGAAAGCACACTGCCAATC
TCTATCCCCTACATTTCTACACCCGAGGCTCTTGATTCGCCTTGTGCCGA
TGCTGTGGCAAAGGCCGATCCGTGTTTGGAGGAGCAAATCGAGTATGAAG
GAACCACGCAAAACTTGTCCCCTCAGTCATGCGTAACGACATGTAATTTA
GCTTTGGCCGCCGACAATGCTACAGAAATAGGACACGTGGGCATAGGAAA
TACCTTAACAGCTTACGATAGTCCAAAATCTATTGATCTAGCTCTTAAAT
CTAGTCGTGCGCTCGCTAATTCGATGGAACTTAAAGTCAAAGGCGAACGA
GACGATCGGGGGAAAGACAACATAAGTCCAGCTCCAATTGTTGCCACGCC
TACTGGTGATTGCGACGCTGAAGGAGATCTCGAGGGCTCGACACATTCAG
GTTCATGTCAAGCTGAGAAGGAGGCACGGGGGTTGAGACTGGACACGAGC
ACCGAGAGCAATGGAGCTGTTGAAAGTAGTTGCCCAGAACCGAATCGATC
TCAGTCGACCACTGCCCCCGCCGGGAATGGAGATCGTGACATCCAGTCGA
CAGCATCCAGCCCCCTCGAGCTGACACTTACCCCTGCCATAAGTAATTTT
ACATCCATTGCTACAGCTGTGCCCGCAGATGGCTTTCAAAGGGAGCGAGA
GCACTTGCAGAGGGAATTAAGGGAGTCTCAGGGTCGGGTGCAAGCCTTGG
AGAATGAGATCAGAAAAGCCCAGGCGATTTACATGAGCGAGGAGGCCAAA
CAACGGCAAATTCATGCATTGCAAGAGGAGGGCAAGGCGTTGGCATTCAA
GCAGTCTGAAATGGAGCAACTGGTACGCAAAAGCCGTGCAGAATTGAAAA
AGGTAGAATCGGAAAGGTCGCAGCTGCAAGAGTCGAATGAGGCTCACAAA
AGAGAAATGGTAACACTGAGGGAGCAGCTTCGCGCCTCAGAGACGGAGAA
GAACCTGCTGGCACAGAGCCTGTCGGCGGTCCAGGCCGTCAACAAGTCAG
CGGCTGAGAAGACGTCGAAGTTGGAGCAAGAGCTCAGCCACGCACAGGTA
GAGATCAGCAGCCAGCATGAATCTTTACAGAAGGCATGGGAGGAGGAGAA
GGAAATGAAGCGAATGATTTCGGAAATGACTGCGTCGGAGAGCGGGGTCA
AGGACTTGCAAGACCCGGGGAAGGCTCTCTCGCGCGGTCTGGCCGGGATC
AAGGACGACTTCGAGCGGCGCGAGGCGGTCCTACAAGCCACGAATAAGCA
GCTACAAGAGGCATTGACTCGCGCAAGCCTGGAGGCAGGCCTGCGTGAAG
ACAGTCTGCGACAAGAACTTGCAGAGATGCGAAGGCGGTGGCAGGACGCT
GTCTCTCGCACGGAGGGCATGGCATCCGACGTGCACGAGGCGACCGTGCC
GCTGCTCCGACAGATCAAGGCCCTGCAGGAAGAGGCTCGAGGACGGGCAG
CTGCCTGGGCCAGCGCGGAGGAGGCCTTGACGGATAGAGCGCGGGGGGCT
GAGGGCTTGGCACGCACAGCGGAGGCGGAGCGGCTGGAGCTGGGCGGGAG
GGTGGAGGGTCTCAGGACGAGAATAGAGGACCTCGACGTCCAACTTCGGT
ACGCATAGATGTGGTCCAAGCTTAGCTCCGAATTGCTTGGAAAGGAAACT
CAAGATGCTTTGACGGATGCCTTACAAAAAGGCAAGCAGGCTTGGCAGTC
AATTGAGCAGTCGCTGGATCAAGCCGTAGATGCGGACACGGTAGTTTCCA
AGGAAAGCACACTGCCAATCTCTATCCCCTACATTTCTACACCCGAGGCT
CTTGATTCGCCTTGTGCCGATGCTGTGGCAAAGGCCGATCCGTGTTTGGA
GGAGCAAATCGAGTATGAAGGAACCACGCAAAACTTGTCCCCTCAGTCAT
GCGTAACGACATGTAATTTAGCTTTGGCCGCCGACAATGCTACAGAAATA
GGACACGTGGGCATAGGAAATACCTTAACAGCTTACGATAGTCCAAAATC
TATTGATCTAGCTCTTAAATCTAGTCGTGCGCTCGCTAATTCGATGGAAC
TTAAAGTCAAAGGCGAACGAGACGATCGGGGGAAAGACAACATAAGTCCA
GCTCCAATTGTTGCCACGCCTACTGGTGATTGCGACGCTGAAGGAGATCT
CGAGGGCTCGACACATTCAGGTTCATGTCAAGCTGAGAAGGAGGCACGGG
GGTTGAGACTGGACACGAGCACCGAGAGCAATGGAGCTGTTGAAAGTAGT
TGCCCAGAACCGAATCGATCTCAGTCGACCACTGCCCCCGCCGGGAATGG
AGATCGTGACATCCAGTCGACAGCATCCAGCCCCCTCGAGCTGACACTTA
CCCCTGCCATAAGTAATTTTACATCCATTGCTACAGCTGTGCCCGCAGAT
GGCTTTCAAAGGGAGCGAGAGCACTTGCAGAGGGAATTAAGGGAGTCTCA
GGGTCGGGTGCAAGCCTTGGAGAATGAGATCAGAAAAGCCCAGGCGATTT
ACATGAGCGAGGAGGCCAAACAACGGCAAATTCATGCATTGCAAGAGGAG
GGCAAGGCGTTGGCATTCAAGCAGTCTGAAATGGAGCAACTGGTACGCAA
AAGCCGTGCAGAATTGAAAAAGGTAGAATCGGAAAGGTCGCAGCTGCAAG
AGTCGAATGAGGCTCACAAAAGAGAAATGGTAACACTGAGGGAGCAGCTT
CGCGCCTCAGAGACGGAGAAGAACCTGCTGGCACAGAGCCTGTCGGCGGT
CCAGGCCGTCAACAAGTCAGCGGCTGAGAAGACGTCGAAG back to top
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