|
|
Properties
| Property Name | Value |
|---|
| Product | translation initiation factor eif-2b subunit delta isoform 1 |
| Orig transcript id | gnl|cribi|Naga_100011g52.3430.mrna |
| Orig protein id | gnl|cribi|Naga_100011g52.3430 |
| Gene | EIF2Bdelta |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037248.1 | supercontig | KK037248.1:159040..160972 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8241 ID=rna8241|Name=rna8241|organism=Nannochloropsis gaditana|type=mRNA|length=2537bp
GGGGCTTTCCGCATCCTGCCCCTTGCTTGCTCTTCCAATTCTCACATATC
TACCTCACGGGCTCCTCTCGAGGACAGGGACCTGTGGCACGAGCGGCGGG
GCTGCTTCGGGCGTTGTCTCTTCGCTAAAGCAGCAAGAGCGTCGGAGGGG
TCATCACCCCTTCACTCATCATCCAGGAGGGGACCGACGCCGCCTACTGT
GCTGCTCACAATGGCAGGCATGACATTTGCATCGTATCTGGCCTTGAGCA
TATCCTTGACGGCATTCACGGTGAGCTACGCGTTCCAGTCCCGCGTGCAA
TTCTACCCGGCCGTAATCTACCTCGTTACATCCAAACCTTCCGTTCTCGT
CCTCGGCAACATGGGTTTAATGCTTACGCTTTTGGTAGGCCGTACTCTCA
AGACAATATTTTTTGGACGATTGCGAGATGTTGAGGTGGAGCTGCTTTAC
GACAACGCTCGCTATGCCGTGACTGAGACGTGCCTTGCCCTGACCATTTT
CCGTGAGGAGCTTACAGTGCGCGTGCTGACACTCTTTACCGCCCTTCTGT
TTTCCAAGAGCTTCCATTGGCTGTGTCAAAGCCGCGTAGAATACGTTGAG
TCGGACAACGTGTCTCGATGGACGCACTTCCGACTGATGGCACTCATGTA
CACGCTCCTCGTGGTTGACGTGGCTTTCGTCGCCGGCTGTGTCTACTTTT
GGAAGGGCCCTTCGGTTTTAATCCTTTTCGGATTCGAGTACACAATCCTT
GCCGTATCTGTGTCCAGCACGCTTCTGCGATACTGTTTGCATTTAGTGGA
CATGAGGATTGAGGGCAACTGGCCCCAGAAAGGCTCGTACCTTTTTTTCT
TGGAGTTTGCGACCGAGGTGGTGCGATTTCTCTCCTACGTCGTCTTTTTT
AGTATCATTTTTACCTACTACGGTATGCCTTTGCACATCGTGCGCGATCT
GTGGATGTCTTACGTGAACTTGAAGCGCCGTCTCGTCATCTTCAACAAGT
ACCGGCACCTGACGGCAAACATGAACGAGCGCTTTCCCGACGCCACCTCG
GAAGAGTTGAGTGGTTGCGAGCATACTTGCATCATATGCCGTGATCTCAT
GGAAGCAGGGCCGGGTGCCAAGAAGCTGCCATGCTCGCACATTTTCCACC
TGGACTGTCTCCGACTTTGGCTGCAGCAACAGCAAAGCTGCCCCACTTGC
CGCGCCGACATCCCCACCAACGCCCCCACTCCAGTGAGATCTGGGCCACC
GGCTGCGGCGGTCGTGGCTGATGCAGGTGCCGCTGTAGGAGAAGAGCGGG
AACGGCTCGCAGAAGCGGGGGATGACATGGCTGCACCCAGTGACCAAGCA
CCTGCAGGACCTCAAGAGACGCCCAACGCTTCATTGCGGGGGCCGAGTCA
TCCCTCTAGCTCACAGTGGGGGGCGACGAATACCCGTGGATACGCTGGGG
TTCCCACGCGAGCCACAAGGTGGCCTGCGTCCCTTCCCGATGGTGCGCCC
CTGCCGTCGAACTTCCCACACCCACCCGCTTCAAACCGCGGCAGTATCAC
GAATCCCCCGGCCTCGTCTCCCCATCCTCCTGTCACATCCAATATTGCCG
GTCAGACAGCTCAATATCCTCCTTACCCAGTTCCCACTCCGTCCTTGAGC
AGCACATGGCCGTACGTCCCTCAACCGCCTCCATTTATTCCGCCAAGTGC
CTTGTTCGGCATGTTTCCGACAGACGCCAGCGCCTTAAGTGGGGATGCGT
CCCTGTTGATGGGGAATATGGATTATCCAGCTCCGCCCTTCGCTCTTTAC
CGCGTCAGTAGCCCGAACGGTGTACAAGTGCGGGCTTCCCCGGAGTCTAC
CTCAGCAATTTTGCGCACACATCGCCAGAACGAAACGATCCTGATCCTTG
AGCGGAAAGCAGCGCAAGCCGGTAGCGAGGTAGTGTACCGCGTTTTAGGC
GGCGGATTCATTCACGATCGTCTAGAATCGGAAAATAGTCGGGCTGCACT
CGAAAAAATCCTGTCGCCTTTCCCGTTTTCATCAGGACTTTCCCCCTCGA
CGCCGTCATCGCTCTTACCCTTTCCAAGCCCTGCAAGTGTGACGTCAAGC
ACTGGCATCGGTGGCGCCGGTGGACTTTCCCGGTCTCTGATCTCTTTGCG
GCTTGAGTTGAATGAAGCAAGGGCTGGGATGGACACCGTAGTAGAAGGAC
TCGCGGTGCTGCTGGCAAGACAGCAAGCCGAAGCGCTGCGCCTTCAGAAC
GTTCTCGCAGGCCTTGAGCACGCCCACGAAGAGCTCGCAGCCCGGACAGC
TACCGCAACGAACGGTCCTGACAAGGAAGGAGCAGACGCGGAGAGCAAGA
AAGAAAGCGGGTTTGGGATGGAGGAGTCCAAATTCACCGGTGAAAATGGA
GCAGATTTCCGAGCGGCCGCGACGGCGGAATAGTGAAGGAGACAAGGAAG
TTTTCGACAGTAGGGATGTCGGAACAAGACGATGTAGGTCCCAAAAATCA
AAGATGTGAAGTACCTAAACACGTGACCGCCCAGTAT back to topprotein sequence of rna8241 >rna8241-protein ID=rna8241-protein|Name=rna8241|organism=Nannochloropsis gaditana|type=polypeptide|length=519bp
MGDDELSTSLSEMSLTGSRSLGGIGDDRPGSALSSSPASPGFVGKGTLRP
KHKQQQSGASPTRVRKSSSPKSGKGGGGKASGGVKEDRNRGRDVSSGTTT
SRNTPGGSSRCESERTQGHISAGAKRQGPQSHRGARAESEDWGRHQAPSK
MIHLFSHLPQYSKRSTQSKSDLHPAIETLGLLYADGSVRGSNARTAAMLL
AFKEVVREYQLPPGEVLRLDLDKALKPHIQYLINCRPHSIAMGNAIKWLR
GRIHSLDPEAGPAEAKESIVEAIDAYVEERITFAAKTLAEVTANKISDGD
VVLVYGRSYSVELTLLRAKAQGKKFRVLVVDSRPLLEGRRLLASLSRANI
PSTYLNLNAVSYVMRGVSKVLLGVAAMLSNGAVISRAGTAVVAMLARRFN
IPAIFCCETYKFSDKVQLDSICWNEVGDPAELLRPAGGPGVTRQMEQAHS
LQKDKPGIAASELTASLPQRLKLLNIRYDLTPMKYVSLVITEVGMIPPTS
VPVLLRESSKDDVNVNFEF back to topmRNA from alignment at KK037248.1:159040..160972- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8241 ID=rna8241|Name=rna8241|organism=Nannochloropsis gaditana|type=mRNA|length=1933bp|location=Sequence derived from alignment at KK037248.1:159040..160972- (Nannochloropsis gaditana)
CACCATCGGACAGCTGGAGTGAAAGATTAAAAACACATCCCTTTTTCCTC
TTACGGTTTCCGATCAATCCACAATAAAACATGCGGCACAGGTCATAGTG
GTGGTGAAGCTTGACAACAAGATGGGGGACGATGAACTGGTAAGAAAGTT
TTCCCCTCCTCTCTGTAGTATGCTCCCCTAATTTTACCGTTTCCTCTTTT
AACAGTCAACGTCCTTGAGTGAGATGTCTTTAACTGGGTCCCGGAGTCTC
GGTGGAATAGGAGATGATCGTCCGGGGTCGGCGCTGAGCTCCTCGCCCGC
AAGCCCAGGATTTGTGGGAAAAGGGACGTTGCGACCTAAGCACAAGCAGC
AGCAGTCGGGAGCATCCCCAACCCGCGTGCGAAAGAGCTCCTCCCCCAAA
AGTGGAAAAGGGGGCGGAGGCAAAGCCAGTGGGGGCGTGAAAGAAGATAG
GAATCGAGGAAGGGATGTGAGCAGCGGCACTACCACCTCCAGAAATACTC
CTGGAGGCTCTTCTCGGTGCGAATCTGAGGTAGGTAAAAACCACAAGGCG
GCTGAAATTATCGCCACTGCTTCACTTGCAGCACACCATTTGAAACCCTG
GCTTTGTTGCACAATATCCACGACCAGCGCACGCAGGGGCATATCAGCGC
CGGGGCGAAGCGTCAGGGGCCGCAAAGCCACCGTGGTGCCCGGGCGGAGT
CTGAGGATTGGGGGCGACACCAGGCCCCCTCGAAAATGATTCACCTGTTT
AGCCACCTTCCGCAGTATTCGAAGCGCTCTACGCAAAGTAAATCCGACCT
GCACCCGGCGATAGAAACCTTGGGGTTGCTGTACGCGGACGGGTCGGTGC
GAGGCTCCAACGCGCGCACAGCAGCTATGCTGTTGGCGTTCAAAGAAGTG
GTGCGAGAATACCAGCTCCCGCCGGGCGAGGTTCTACGCCTGGACCTTGA
TAAAGCCTTAAAGCCGCACATCCAATATCTCATCAATTGTCGGCCCCACT
CTATCGCTATGGGCAACGCTATCAAATGGCTGCGGGGCCGTATCCACAGC
CTGGACCCCGAGGCCGGGCCTGCGGAGGCAAAAGAGAGCATCGTGGAAGC
CATTGATGCGTACGTGGAAGAACGGATAACGTTCGCGGCAAAAACATTGG
CCGAGGTGACTGCGAATAAGATCTCGGACGGGGACGTGGTGCTGGTCTAC
GGTCGCTCCTATTCCGTGGAGCTCACGCTGCTTCGCGCAAAGGCTCAAGG
GAAGAAGTTCCGCGTACTCGTGGTGGACTCACGACCGCTCCTTGAGGGCC
GACGCCTTCTGGCATCATTGTCACGTGCGAATATTCCCAGCACCTACCTG
AATTTAAACGCTGTCTCATACGTCATGCGTGGAGTGTCAAAGGTTCTCCT
GGGTGTTGCCGCCATGCTATCGAACGGCGCCGTCATATCCCGTGCGGGCA
CAGCAGTTGTCGCCATGCTTGCTCGACGCTTTAATATTCCCGCAATTTTT
TGTTGCGAGACTTATAAGTTCTCAGACAAGGTACAACTTGACTCCATTTG
TTGGAACGAAGTAGGCGATCCAGCCGAGCTCCTCCGGCCTGCTGGCGGTC
CTGGAGTTACTCGTCAGATGGAACAGGCCCACTCTCTGCAAAAAGACAAG
CCTGGAATCGCAGCATCGGAATTGACGGCGTCCCTGCCGCAACGACTGAA
GCTTTTAAATATCCGTTACGACTTGACACCCATGAAATATGTCTCCCTCG
TCATCACAGAGGTTGGAATGATTCCTCCAACGTCTGTGCCTGTTCTCTTG
CGAGAGAGTAGCAAGGATGACGTCAACGTCAATTTTGAGTTTTGAGAGAG
CAGCAGAGAGCGTAAACGTGTCGTCATTTTGCGAGCAAGGAAGCGAAAGC
AATGTCACATACTGGGCGGTCACGTGTTTAGGT back to topCoding sequence (CDS) from alignment at KK037248.1:159040..160972- >rna8241 ID=rna8241|Name=rna8241|organism=Nannochloropsis gaditana|type=CDS|length=4680bp|location=Sequence derived from alignment at KK037248.1:159040..160972- (Nannochloropsis gaditana)
CGCACGCAGGGGCATATCAGCGCCGGGGCGAAGCGTCAGGGGCCGCAAAG
CCACCGTGGTGCCCGGGCGGAGTCTGAGGATTGGGGGCGACACCAGGCCC
CCTCGAAAATGATTCACCTGTTTAGCCACCTTCCGCAGTATTCGAAGCGC
TCTACGCAAAGTAAATCCGACCTGCACCCGGCGATAGAAACCTTGGGGTT
GCTGTACGCGGACGGGTCGGTGCGAGGCTCCAACGCGCGCACAGCAGCTA
TGCTGTTGGCGTTCAAAGAAGTGGTGCGAGAATACCAGCTCCCGCCGGGC
GAGGTTCTACGCCTGGACCTTGATAAAGCCTTAAAGCCGCACATCCAATA
TCTCATCAATTGTCGGCCCCACTCTATCGCTATGGGCAACGCTATCAAAT
GGCTGCGGGGCCGTATCCACAGCCTGGACCCCGAGGCCGGGCCTGCGGAG
GCAAAAGAGAGCATCGTGGAAGCCATTGATGCGTACGTGGAAGAACGGAT
AACGTTCGCGGCAAAAACATTGGCCGAGGTGACTGCGAATAAGATCTCGG
ACGGGGACGTGGTGCTGGTCTACGGTCGCTCCTATTCCGTGGAGCTCACG
CTGCTTCGCGCAAAGGCTCAAGGGAAGAAGTTCCGCGTACTCGTGGTGGA
CTCACGACCGCTCCTTGAGGGCCGACGCCTTCTGGCATCATTGTCACGTG
CGAATATTCCCAGCACCTACCTGAATTTAAACGCTGTCTCATACGTCATG
CGTGGAGTGTCAAAGGTTCTCCTGGGTGTTGCCGCCATGCTATCGAACGG
CGCCGTCATATCCCGTGCGGGCACAGCAGTTGTCGCCATGCTTGCTCGAC
GCTTTAATATTCCCGCAATTTTTTGTTGCGAGACTTATAAGTTCTCAGAC
AAGGTACAACTTGACTCCATTTGTTGGAACGAAGTAGGCGATCCAGCCGA
GCTCCTCCGGCCTGCTGGCGGTCCTGGAGTTACTCGTCAGATGGAACAGG
CCCACTCTCTGCAAAAAGACAAGCCTGGAATCGCAGCATCGGAATTGACG
GCGTCCCTGCCGCAACGACTGAAGCTTTTAAATATCCGTTACGACTTGAC
ACCCATGAAATATGTCTCCCTCGTCATCACAGAGGTTGGAATGATTCCTC
CAACGTCTGTGCCTGTTCTCTTGCGAGAGAGTAGCAAGGATGACGTCAAC
GTCAATTTTGAGTTTTGATCAACGTCCTTGAGTGAGATGTCTTTAACTGG
GTCCCGGAGTCTCGGTGGAATAGGAGATGATCGTCCGGGGTCGGCGCTGA
GCTCCTCGCCCGCAAGCCCAGGATTTGTGGGAAAAGGGACGTTGCGACCT
AAGCACAAGCAGCAGCAGTCGGGAGCATCCCCAACCCGCGTGCGAAAGAG
CTCCTCCCCCAAAAGTGGAAAAGGGGGCGGAGGCAAAGCCAGTGGGGGCG
TGAAAGAAGATAGGAATCGAGGAAGGGATGTGAGCAGCGGCACTACCACC
TCCAGAAATACTCCTGGAGGCTCTTCTCGGTGCGAATCTGAGATGGGGGA
CGATGAACTGCGCACGCAGGGGCATATCAGCGCCGGGGCGAAGCGTCAGG
GGCCGCAAAGCCACCGTGGTGCCCGGGCGGAGTCTGAGGATTGGGGGCGA
CACCAGGCCCCCTCGAAAATGATTCACCTGTTTAGCCACCTTCCGCAGTA
TTCGAAGCGCTCTACGCAAAGTAAATCCGACCTGCACCCGGCGATAGAAA
CCTTGGGGTTGCTGTACGCGGACGGGTCGGTGCGAGGCTCCAACGCGCGC
ACAGCAGCTATGCTGTTGGCGTTCAAAGAAGTGGTGCGAGAATACCAGCT
CCCGCCGGGCGAGGTTCTACGCCTGGACCTTGATAAAGCCTTAAAGCCGC
ACATCCAATATCTCATCAATTGTCGGCCCCACTCTATCGCTATGGGCAAC
GCTATCAAATGGCTGCGGGGCCGTATCCACAGCCTGGACCCCGAGGCCGG
GCCTGCGGAGGCAAAAGAGAGCATCGTGGAAGCCATTGATGCGTACGTGG
AAGAACGGATAACGTTCGCGGCAAAAACATTGGCCGAGGTGACTGCGAAT
AAGATCTCGGACGGGGACGTGGTGCTGGTCTACGGTCGCTCCTATTCCGT
GGAGCTCACGCTGCTTCGCGCAAAGGCTCAAGGGAAGAAGTTCCGCGTAC
TCGTGGTGGACTCACGACCGCTCCTTGAGGGCCGACGCCTTCTGGCATCA
TTGTCACGTGCGAATATTCCCAGCACCTACCTGAATTTAAACGCTGTCTC
ATACGTCATGCGTGGAGTGTCAAAGGTTCTCCTGGGTGTTGCCGCCATGC
TATCGAACGGCGCCGTCATATCCCGTGCGGGCACAGCAGTTGTCGCCATG
CTTGCTCGACGCTTTAATATTCCCGCAATTTTTTGTTGCGAGACTTATAA
GTTCTCAGACAAGGTACAACTTGACTCCATTTGTTGGAACGAAGTAGGCG
ATCCAGCCGAGCTCCTCCGGCCTGCTGGCGGTCCTGGAGTTACTCGTCAG
ATGGAACAGGCCCACTCTCTGCAAAAAGACAAGCCTGGAATCGCAGCATC
GGAATTGACGGCGTCCCTGCCGCAACGACTGAAGCTTTTAAATATCCGTT
ACGACTTGACACCCATGAAATATGTCTCCCTCGTCATCACAGAGGTTGGA
ATGATTCCTCCAACGTCTGTGCCTGTTCTCTTGCGAGAGAGTAGCAAGGA
TGACGTCAACGTCAATTTTGAGTTTTGATCAACGTCCTTGAGTGAGATGT
CTTTAACTGGGTCCCGGAGTCTCGGTGGAATAGGAGATGATCGTCCGGGG
TCGGCGCTGAGCTCCTCGCCCGCAAGCCCAGGATTTGTGGGAAAAGGGAC
GTTGCGACCTAAGCACAAGCAGCAGCAGTCGGGAGCATCCCCAACCCGCG
TGCGAAAGAGCTCCTCCCCCAAAAGTGGAAAAGGGGGCGGAGGCAAAGCC
AGTGGGGGCGTGAAAGAAGATAGGAATCGAGGAAGGGATGTGAGCAGCGG
CACTACCACCTCCAGAAATACTCCTGGAGGCTCTTCTCGGTGCGAATCTG
AGATGGGGGACGATGAACTGCGCACGCAGGGGCATATCAGCGCCGGGGCG
AAGCGTCAGGGGCCGCAAAGCCACCGTGGTGCCCGGGCGGAGTCTGAGGA
TTGGGGGCGACACCAGGCCCCCTCGAAAATGATTCACCTGTTTAGCCACC
TTCCGCAGTATTCGAAGCGCTCTACGCAAAGTAAATCCGACCTGCACCCG
GCGATAGAAACCTTGGGGTTGCTGTACGCGGACGGGTCGGTGCGAGGCTC
CAACGCGCGCACAGCAGCTATGCTGTTGGCGTTCAAAGAAGTGGTGCGAG
AATACCAGCTCCCGCCGGGCGAGGTTCTACGCCTGGACCTTGATAAAGCC
TTAAAGCCGCACATCCAATATCTCATCAATTGTCGGCCCCACTCTATCGC
TATGGGCAACGCTATCAAATGGCTGCGGGGCCGTATCCACAGCCTGGACC
CCGAGGCCGGGCCTGCGGAGGCAAAAGAGAGCATCGTGGAAGCCATTGAT
GCGTACGTGGAAGAACGGATAACGTTCGCGGCAAAAACATTGGCCGAGGT
GACTGCGAATAAGATCTCGGACGGGGACGTGGTGCTGGTCTACGGTCGCT
CCTATTCCGTGGAGCTCACGCTGCTTCGCGCAAAGGCTCAAGGGAAGAAG
TTCCGCGTACTCGTGGTGGACTCACGACCGCTCCTTGAGGGCCGACGCCT
TCTGGCATCATTGTCACGTGCGAATATTCCCAGCACCTACCTGAATTTAA
ACGCTGTCTCATACGTCATGCGTGGAGTGTCAAAGGTTCTCCTGGGTGTT
GCCGCCATGCTATCGAACGGCGCCGTCATATCCCGTGCGGGCACAGCAGT
TGTCGCCATGCTTGCTCGACGCTTTAATATTCCCGCAATTTTTTGTTGCG
AGACTTATAAGTTCTCAGACAAGGTACAACTTGACTCCATTTGTTGGAAC
GAAGTAGGCGATCCAGCCGAGCTCCTCCGGCCTGCTGGCGGTCCTGGAGT
TACTCGTCAGATGGAACAGGCCCACTCTCTGCAAAAAGACAAGCCTGGAA
TCGCAGCATCGGAATTGACGGCGTCCCTGCCGCAACGACTGAAGCTTTTA
AATATCCGTTACGACTTGACACCCATGAAATATGTCTCCCTCGTCATCAC
AGAGGTTGGAATGATTCCTCCAACGTCTGTGCCTGTTCTCTTGCGAGAGA
GTAGCAAGGATGACGTCAACGTCAATTTTGAGTTTTGATCAACGTCCTTG
AGTGAGATGTCTTTAACTGGGTCCCGGAGTCTCGGTGGAATAGGAGATGA
TCGTCCGGGGTCGGCGCTGAGCTCCTCGCCCGCAAGCCCAGGATTTGTGG
GAAAAGGGACGTTGCGACCTAAGCACAAGCAGCAGCAGTCGGGAGCATCC
CCAACCCGCGTGCGAAAGAGCTCCTCCCCCAAAAGTGGAAAAGGGGGCGG
AGGCAAAGCCAGTGGGGGCGTGAAAGAAGATAGGAATCGAGGAAGGGATG
TGAGCAGCGGCACTACCACCTCCAGAAATACTCCTGGAGGCTCTTCTCGG
TGCGAATCTGAGATGGGGGACGATGAACTG back to top
|