rna8230, rna8230 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8230
Unique Name	rna8230
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1227
Alignment location	KK037248.1:136010..138508 -

Link to JBrowse

Properties


Property Name	Value
Product	WD40-repeat-containing protein
Orig transcript id	gnl\|cribi\|Naga_100011g42.3432.mrna
Orig protein id	gnl\|cribi\|Naga_100011g42.3432
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:136010..138508 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100011g42	gene7972	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8230	rna8230-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22432.1	cds8206	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:136010..138508-
coding sequence from alignment at KK037248.1:136010..138508-

mRNA sequence

>rna8230 ID=rna8230|Name=rna8230|organism=Nannochloropsis gaditana|type=mRNA|length=1227bp
ATGAAGGTTACTCTCCTCGTGTGGGGGCTCCTGTTTCTACCTGATTCAGT
CCAGAGTTTCTTGTCGCCTGGGGTCCATCGTGCAGCTGCCATGAACCTCC
CGGGGAAGACTCGTTTGACAAGCACGAGTTCCGGCGCGATTCAGCCTGTC
CGACGTAGTCTGCAAGCCTCTAGCAGCGTCGTTAAAAAGCCTGCCTCACG
TTTAATGGTGAATCTACTTACTGCAACAAGCACGTTTGGAGCTTCTTCTA
TTATCAAAAGTCTGCCAATTTTGGGGACCCTGGTGGTCGCAGGTTTGCTT
GCTGCACGCCTTCCGGGTGTCATAGCTCGGGGCTGGCGCTCTTACAACAA
GGAAGAGAACTCGGTGGGACGTGAGTACGACGCTTGGACGCGGGAGAAGA
TTTTGGAGCACTACTGGGGAGAGCATATCCATTTGGGGTACTACACCGAG
GAGGATCAGAAAGCTGGGTACCTGAAGAAGAATTTTATTGGCGCCAAATA
CGACTTCATCGATCGCATGATGGCTTTCGCAAAGTTAGACGGCCAAACCT
TTAAACCCGCTAAAGTTCTAGATGTTGGGTGTGGAATCGGTGGTACTACA
CGCTATATTGCAAAGAAACTCGGCACGACATCCCAGGTGTCGGGTATAAC
GCTCTCACAAGAGCAGGTTCGACGAGCCAAGGAGCTGGCCGAAGAACAGG
ACGTGACCAATGCTGAATTTCAAGTCATGGACGCCCTGCACATGAGTTAT
CCGGACAATAGCTTTGATCTCGTGTGGGCCTGTGAGTCGGGCGAGCACAT
GCCTGACAAAAAAGCTTACGTGGAAGAAATGGTGCGCGTTCTAAAGCCAG
GCGGCACGCTTGTCATTGCTTGTTGGTGCCAGCGAGATGCAAAGGCGTTT
CCTTTGTCGCGATCGGAGCAAAAGCGCGTGGACTTCATGTGCACGGAATG
GAGCCACCCATATTTTATTTCCATCCAAGACTTCGAGCGGCTGGCGCTGG
GCACAGGCGTGATGGAAAATGTGCGAACCGAAGACTGGGCCAAATTTACT
CTCCCCAGTTGGCGACACTCAGTGTGGGTGGGCGTCTTTGATCCGTTTTT
CTGGATGCTTAGGCCACATTTATGGGTGAAAATCTTGCGTGATGCGTTTA
CGTTGAACGTATTTCACAACGCTTTCAAGGATGGCCTCATGGGGTATGGC
ATGATTTACGCTCAAAAGAAAAAGTAA

protein sequence of rna8230

>rna8230-protein ID=rna8230-protein|Name=rna8230|organism=Nannochloropsis gaditana|type=polypeptide|length=434bp
MERALHSQDVVKAVLSYLDHYTLLRRGARVSRGWQRVIEAGGLGEEACRL
AFWSHYRSQDECYPNDFATISTSSFSWRKECKSRRLNGWSPREDIVGPST
VCDITGDVIFAVAATPVDSLFICGGENGILYFIDITEEVGKAIRYHFEAH
TGTLLALSARKSCPGRDGVSMYHVISGDTLGCIQINAVDVVHRTRHILYT
LRLKTSVLHFVRLRRDMQASALRDGTVFCWRDYSGSQEKSGEGHGSGEAN
ATHAHNGEVTHFTGIGEENRVRLLVTASNSDQNLRTWRTAFGKDPGNSVR
VELEPMQVLSLASLSVGSLCTSSGMSVAPDGVVTLGFGNGRVCSLDAYTC
SLISVLHVHDDEVWDVRSCGSGMVVTSSRDRSVAVSDIRSADPSDHFRLA
VGNWIVRVKATPACLLLLGFDAQLRVVRKRSLKM

mRNA from alignment at KK037248.1:136010..138508-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8230 ID=rna8230|Name=rna8230|organism=Nannochloropsis gaditana|type=mRNA|length=2499bp|location=Sequence derived from alignment at KK037248.1:136010..138508- (Nannochloropsis gaditana)
CCTGAGCATCCAAAAACGTCACCACTAAGGCATAGTTTAATTACTGTTCC
TGCACCCTTTCATCTCGTGAGCTCGCACGGATTGGCGATAGGGGCGCGAC
GTGCAGGTACTGCTAGTAGCAGCGACCGAGGATGATCATACAGCGGCCTG
GTATGAACCCGAAGTCCCTATATTTGCGGACGAGATGATGGCTTAATGCG
GCAAAGTAATGTACTTGAAGGAACTGGAACGTTCTTCGCTTGACAGCTTC
ACATCCACCTGCACAGGGCGGTGTGACGGTGTGGGAGGTTGGAAGGGGTA
TTGCGTGAGCTTGCGTCTTCACACGCCCTGCCGAGCCTAAAACTTGCGCT
CCTGTATGACAGTCGGGACGGCTCAGCAAAATAGTCGGATGGCACTTGTG
CTGGCTTTGGTCCTTGAAGAGACTATCTGGTACCGCGTCGCGAGCGTTTA
AGGCCGGAGAGGTTGCTTGCGCTTCTTGCTCTCTTATAATGATACACTTC
AAACCTTACCCAATAGGTGAAGAATATGGAAAGAGCTTTGCATAGTCAAG
ACGTCGTAAAAGCCGTGCTTTCCTACCTGGACCATTATACTCTCCTACGA
AGAGGTGCCAGAGTTAGCCGTGGATGGCAACGTGTTATTGAGGCAGGTGG
TCTAGGCGAAGAGGCGTGTCGATTAGCCTTCTGGTCACACTATCGCAGCC
AAGATGAGTGCTACCCGAATGATTTTGCCACAATCTCTACTTCGTCATTT
TCTTGGCGGAAAGAATGCAAAAGCAGGAGGTTGAACGGCTGGAGTCCTCG
TGAAGATATCGTTGGGCCGAGCACAGGTCCGTCCTTGATCACTGGACTTC
CTATCCATCCCACATCACAGCATTGTTTGCATCCTCATGGAGACTCATAT
TATAACCTTAGTGTGTGATATCACTGGAGACGTGATCTTTGCAGTCGCCG
CGACTCCAGTGGACAGCTTGTTCATTTGTGGTGGGGAAAACGGCATCCTT
TATTTTATCGATATCACCGAGGAGGTCGGCAAAGCCATTCGCTACCACTT
TGAGGCGCATACAGGCACACTTTTGGCCCTTTCCGCACGAAAGTCCTGTC
CAGGCCGTGATGGCGTGTCCATGTACCACGTCATAAGTGGCGACACCCTG
GGCTGTATCCAGATTAACGCTGTTGACGTTGTACATCGGACCAGACACAT
TCTTTATACCCTGCGTCTGAAAACCTCGGTCCTTCACTTCGTGCGACTCC
GAAGGGACATGCAGGCTAGCGCTTTGCGGGACGGCACCGTATTCTGTTGG
AGGGACTACTCCGGGTCACAAGAGAAGTCAGGCGAAGGTCATGGCAGCGG
TGAAGCTAACGCAACTCACGCTCACAATGGAGAAGTGACGCATTTTACTG
GAATCGGTGAGGAAAATAGGGTCAGATTGCTTGTAACGGCCTCGAATTCC
GACCAAAATCTGCGGACCTGGCGTACGGCGTTCGGGAAAGATCCGGGGAA
CTCGGTGAGAGTTGAGCTGGAGCCCATGCAGGTACTGTCGTTGGCAAGCT
TAAGCGTGGGATCTCTTTGCACTAGCTCGGGGATGAGCGTCGCGCCTGAC
GGGGTTGTAACCCTGGGTTTTGGGAACGGCCGAGTCTGCTCTCTGGATGC
TTATACGTGCTCGCTGATCAGCGTCCTGCACGTACACGACGACGAAGTAT
GGGACGTGCGAAGCTGTGGGAGCGGCATGGTTGTTACATCATCCCGAGAC
CGAAGCGTAGCTGTAAGTGACATCCGCTCTGCAGACCCGTCGGATCATTT
CCGGTTGGCTGTAGGCAACTGGATCGTACGTGTGAAGGCGACACCCGCAT
GTCTTCTCTTGTTGGGCTTTGACGCACAGCTTCGTGTCGTCAGAAAAAGG
TCCTTGAAAATGTGAAAGCATGTGTGAAGAGTTTCGCGGTACCTACTCGA
ATTCCCCCTTCACTGATAAGTCCCGGAGCCAACATGAATAGGGTCCCCCC
CTGACACAGGATGTTATCGACTTTGTGTTTTCATCCGAACCAGAGTCATT
ATGACGATCATGGTAAGGGAACGTGATGAGCGCAATTCACAATGATATTT
TGTCAAATTATGGTGCGGGCCGACTGATAGGTGAATTGGTAACTTTAGGA
CTCATTATCAGGGTTAGGTACCCCCTTTCGCAATCAGTAGGTGCTCGCCT
GACGTGAATCTCGCTATCGCCAGAATTCCGAGGTACTTTTACTGACTACG
TGATATGTAAGCAAGCGAAAAGAAAATTCACACAAGCCCCAAGACGGGTG
TCGAGGAATATATATCAAAATGTGCCAATATGCTTCCACGCTTCATGCAC
GGAATGACTGGCCACACGCGCGCGTGGATGCACATGCCGCGTCATTCATT
GAAAACAGTGCAGGGGGAAAGTTCCTTTTTTTTCGACACGGATTCACCAA
TGTTTGGGATATAGATATTCCCCTGTTGTCGTACAAAAGAAGGCTCACC

Coding sequence (CDS) from alignment at KK037248.1:136010..138508-

>rna8230 ID=rna8230|Name=rna8230|organism=Nannochloropsis gaditana|type=CDS|length=2610bp|location=Sequence derived from alignment at KK037248.1:136010..138508- (Nannochloropsis gaditana)
TGTGTGATATCACTGGAGACGTGATCTTTGCAGTCGCCGCGACTCCAGTG
GACAGCTTGTTCATTTGTGGTGGGGAAAACGGCATCCTTTATTTTATCGA
TATCACCGAGGAGGTCGGCAAAGCCATTCGCTACCACTTTGAGGCGCATA
CAGGCACACTTTTGGCCCTTTCCGCACGAAAGTCCTGTCCAGGCCGTGAT
GGCGTGTCCATGTACCACGTCATAAGTGGCGACACCCTGGGCTGTATCCA
GATTAACGCTGTTGACGTTGTACATCGGACCAGACACATTCTTTATACCC
TGCGTCTGAAAACCTCGGTCCTTCACTTCGTGCGACTCCGAAGGGACATG
CAGGCTAGCGCTTTGCGGGACGGCACCGTATTCTGTTGGAGGGACTACTC
CGGGTCACAAGAGAAGTCAGGCGAAGGTCATGGCAGCGGTGAAGCTAACG
CAACTCACGCTCACAATGGAGAAGTGACGCATTTTACTGGAATCGGTGAG
GAAAATAGGGTCAGATTGCTTGTAACGGCCTCGAATTCCGACCAAAATCT
GCGGACCTGGCGTACGGCGTTCGGGAAAGATCCGGGGAACTCGGTGAGAG
TTGAGCTGGAGCCCATGCAGGTACTGTCGTTGGCAAGCTTAAGCGTGGGA
TCTCTTTGCACTAGCTCGGGGATGAGCGTCGCGCCTGACGGGGTTGTAAC
CCTGGGTTTTGGGAACGGCCGAGTCTGCTCTCTGGATGCTTATACGTGCT
CGCTGATCAGCGTCCTGCACGTACACGACGACGAAGTATGGGACGTGCGA
AGCTGTGGGAGCGGCATGGTTGTTACATCATCCCGAGACCGAAGCGTAGC
TGTAAGTGACATCCGCTCTGCAGACCCGTCGGATCATTTCCGGTTGGCTG
TAGGCAACTGGATCGTACGTGTGAAGGCGACACCCGCATGTCTTCTCTTG
TTGGGCTTTGACGCACAGCTTCGTGTCGTCAGAAAAAGGTCCTTGAAAAT
GTGAATGGAAAGAGCTTTGCATAGTCAAGACGTCGTAAAAGCCGTGCTTT
CCTACCTGGACCATTATACTCTCCTACGAAGAGGTGCCAGAGTTAGCCGT
GGATGGCAACGTGTTATTGAGGCAGGTGGTCTAGGCGAAGAGGCGTGTCG
ATTAGCCTTCTGGTCACACTATCGCAGCCAAGATGAGTGCTACCCGAATG
ATTTTGCCACAATCTCTACTTCGTCATTTTCTTGGCGGAAAGAATGCAAA
AGCAGGAGGTTGAACGGCTGGAGTCCTCGTGAAGATATCGTTGGGCCGAG
CACAGTGTGTGATATCACTGGAGACGTGATCTTTGCAGTCGCCGCGACTC
CAGTGGACAGCTTGTTCATTTGTGGTGGGGAAAACGGCATCCTTTATTTT
ATCGATATCACCGAGGAGGTCGGCAAAGCCATTCGCTACCACTTTGAGGC
GCATACAGGCACACTTTTGGCCCTTTCCGCACGAAAGTCCTGTCCAGGCC
GTGATGGCGTGTCCATGTACCACGTCATAAGTGGCGACACCCTGGGCTGT
ATCCAGATTAACGCTGTTGACGTTGTACATCGGACCAGACACATTCTTTA
TACCCTGCGTCTGAAAACCTCGGTCCTTCACTTCGTGCGACTCCGAAGGG
ACATGCAGGCTAGCGCTTTGCGGGACGGCACCGTATTCTGTTGGAGGGAC
TACTCCGGGTCACAAGAGAAGTCAGGCGAAGGTCATGGCAGCGGTGAAGC
TAACGCAACTCACGCTCACAATGGAGAAGTGACGCATTTTACTGGAATCG
GTGAGGAAAATAGGGTCAGATTGCTTGTAACGGCCTCGAATTCCGACCAA
AATCTGCGGACCTGGCGTACGGCGTTCGGGAAAGATCCGGGGAACTCGGT
GAGAGTTGAGCTGGAGCCCATGCAGGTACTGTCGTTGGCAAGCTTAAGCG
TGGGATCTCTTTGCACTAGCTCGGGGATGAGCGTCGCGCCTGACGGGGTT
GTAACCCTGGGTTTTGGGAACGGCCGAGTCTGCTCTCTGGATGCTTATAC
GTGCTCGCTGATCAGCGTCCTGCACGTACACGACGACGAAGTATGGGACG
TGCGAAGCTGTGGGAGCGGCATGGTTGTTACATCATCCCGAGACCGAAGC
GTAGCTGTAAGTGACATCCGCTCTGCAGACCCGTCGGATCATTTCCGGTT
GGCTGTAGGCAACTGGATCGTACGTGTGAAGGCGACACCCGCATGTCTTC
TCTTGTTGGGCTTTGACGCACAGCTTCGTGTCGTCAGAAAAAGGTCCTTG
AAAATGTGAATGGAAAGAGCTTTGCATAGTCAAGACGTCGTAAAAGCCGT
GCTTTCCTACCTGGACCATTATACTCTCCTACGAAGAGGTGCCAGAGTTA
GCCGTGGATGGCAACGTGTTATTGAGGCAGGTGGTCTAGGCGAAGAGGCG
TGTCGATTAGCCTTCTGGTCACACTATCGCAGCCAAGATGAGTGCTACCC
GAATGATTTTGCCACAATCTCTACTTCGTCATTTTCTTGGCGGAAAGAAT
GCAAAAGCAGGAGGTTGAACGGCTGGAGTCCTCGTGAAGATATCGTTGGG
CCGAGCACAG

Synonyms

Publications